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ipscn (XXX) terminated with an error exit status (231) #10

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chklopp opened this issue Aug 25, 2023 · 0 comments
Open

ipscn (XXX) terminated with an error exit status (231) #10

chklopp opened this issue Aug 25, 2023 · 0 comments

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@chklopp
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chklopp commented Aug 25, 2023

Hi,

I'm running FA-fn with singularity on our slurm cluster and all works fine but interproscan.
All my jobs are terminating with error 231.
I've check the iprscan database location and it seems fine

here are the directories
iprscan/5.54-87.0/
cdd gene3d hamap panther pfam phobius pirsf pirsr prints prosite sfld smart superfamily tigrfam tmhmm
then I find the version and then the files

in the tmp directory sub-directories are created
node115_20230825_140419893_cnia
node117_20230825_140420224_jhcc
node117_20230825_140420250_jhss
node117_20230825_140420419_2ouy
node123_20230825_140420668_krc6
node119_20230825_140420686_a66r
node123_20230825_140420872_306s
node117_20230825_140420964_eui8
node116_20230825_140421391_gyd4

And in these sub-directories I find these directories
jobCDD jobFinaliseInitialSteps jobHAMAP jobMatchLookup jobPanther jobPIRSF jobPRINTS-42.0 jobPrositeProfiles jobSMART jobTIGRFAM jobCoils jobGene3d jobLoadFromFasta jobMobiDBLite jobPfam jobPIRSR jobPrositePatterns jobSFLD jobSuperFamily-1.75 kvstore

containing result files

ls -ltr tmp/node115_20230825_140519691_kfws/jobTIGRFAM
total 5784
10822 25 août 16:05 000000000001_000000000024.fasta
5899798 25 août 16:06 000000000001_000000000024.raw.out

Have you an idea where this error can come from?
Where should I look for more insight?
Do I need to increase memory?

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