Can't open SMRTview file

[AnnaSyme]

The output of HGAP in SMRT portal includes a tab for "SMRT View". This downloads a .jnlp file. I can't open this with Java webstart: the exception is:

com.sun.deploy.net.FailedDownloadException: Unable to load resource: http://127.0.0.1:9080/smrtview/axis2-web/app/bin/SMRTView.jar

Thanks!

[madisonkeene]

Just to add to this, SMRT portal I assume is running on localhost:9080 and is using that when it generates the jnlp file because it's unaware of the whole nginx reverse proxy setup. The jnlp file itself needs to access files (data, results etc by the looks of it) on the server.
Not sure how you can get around this (is there a setting somewhere maybe? dunno) but i'm thinking theoretically it should work if you download and run the jnlp on the machine itself via VNC :)

[nuwang]

@AnnaSyme @madiflannery I've posted an issue about this here: https://github.com/PacificBiosciences/SMRT-Analysis/issues/295

We should be able to adjust the hostname, but I don't know how we can make it omit the port. We'd then be forced to open port 9080, which is somewhat undesirable, but would still be possible as a last recourse.