How to pass confidence level to summary?

[DominikRafacz]

The summary tab suggests that the table is universal between the plots, but the confidence level is taken from Comparison Plot in the original HaDeX. In HaDeX GUI temporally the fixed value is used. What shall be done?

[michbur]

The assumption (in the manuscript proposing the summary table) is that the confidence level is global. @werpuc should we set the confidence level globally? I.e., manipulations of the confidence level at one plot affect all others?

[werpuc]

Well, I'm lost here. Setting one global confidence level is against our assumptions - to let the user manipulate parameters and see how the data is changed. I've seen the users using this feature to see if setting the higher value is still working for them. Anyway, I'm against the global one, but have no idea how to choose a value for the summary table. Maybe the lowest for all chosen ones?

[michbur]

But does it make any sense to use one confidence level for one visualization and another confidence level for the other?

[DominikRafacz]

Maybe shall we then readjust summary table somehow?

[michbur]

The summary table is well defined in the literature (10.1038/s41592-019-0459-y, supplementary table 1). But maybe we should put here information that the confidence interval is non-unified among different plots.

[werpuc]

What about our previous approach - when we had two confidence levels in woods plot, we put both of them to the table. Maybe we can check all the confidence levels and show unique values in the table? even if there are three of them.
We don't know how people prepare the data for publication in hadex as no one is doing that. Guess we will learn by experience in the future (hopefully) ?