Merge branch 'pipeline_v6_0' of https://github.com/hartwigmedical/hmf…

…tools into pipeline_v6_0
hartwigmedical · Nov 28, 2024 · 374f9e6 · 374f9e6
2 parents d570efe + 26b3aa1
commit 374f9e6
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/sage/src/main/java/com/hartwig/hmftools/sage/evidence/CandidateEvidence.java b/sage/src/main/java/com/hartwig/hmftools/sage/evidence/CandidateEvidence.java
@@ -58,7 +58,8 @@ public List<AltContext> readBam(
             catch(Exception e)
             {
                 SG_LOGGER.error("error processing read({} {}:{}-{}) error: {}",
-                        record.getReadName(), record.getReferenceName(), record.getAlignmentStart(), record.getAlignmentEnd());
+                        record.getReadName(), record.getReferenceName(), record.getAlignmentStart(), record.getAlignmentEnd(), e.toString());
+                e.printStackTrace();
                 System.exit(1);
             }