redux v1.0 beta

Beta 2:

• set mate unmapped for consensus read with non-human contig read

Beta 3:

• protect against ref base look-ups past end of chromosome
• synchronise calls to process completed read groups for consensus, relevant when reprocessing supplementaries
• use 'redux' in TSV output files

Beta 4:

• use supp BAMs by default, disable with config 'no_supp_bam'
• consensus ref genome end of chromosome fix
• unmap secondaries and drop from BAM

purple v4.1 beta

Purple beta 4 changes:

• write empty somatic VCF when writing other empty files
• fix writing blank purple QC and germline aberration status

pave v1.7 beta

Beta version 1:

• germline to skip gnomad filter use config 'gnomad_no_filter'

linx v2.0 beta

Linx beta 3:

• fixed INSALN parsing and use of SGL alt alignments

cobalt v2.0 beta

cobalt-v2.0_beta

Version 2.0 beta

cuppa v2.2.1-beta.9

Description of release cuppa v2.2.1-beta.9

Full Changelog: cuppa-v2.2.1-beta.8...cuppa-v2.2.1-beta.9

cuppa v2.2.1-beta.8

Description of release cuppa v2.2.1-beta.8

Full Changelog: cuppa-v2.2.1-beta.7...cuppa-v2.2.1-beta.8

cuppa v2.2.1-beta.7

Description of release cuppa v2.2.1-beta.7

Full Changelog: cuppa-v2.2.1-beta.6...cuppa-v2.2.1-beta.7

cuppa v2.2.1-beta.6

Description of release cuppa v2.2.1-beta.6

Full Changelog: cuppa-v2.2.1-beta.5...cuppa-v2.2.1-beta.6

cuppa v2.2.1-beta.5

Description of release cuppa v2.2.1-beta.5

Full Changelog: cuppa-v2.2.1-beta.3...cuppa-v2.2.1-beta.5