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4kHz vs 5kHz #15
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Yes. The latest squigulator v0.3.0 with the -x dna-r10-min and -x dna-r10-prom profiles generate 5KHz data by default. If you want old 4KHz data, specify -f 4000 along with -x dna-r10-min or -x dna-r10-prom. Hope it is clear enough? |
Ideal, thank you! |
Sorry I am now looking at running this and I realise I'm not sure I fully understand the logic behind This simply sets the coverage depth to 4000 I thought? I'm not sure how this would relate to the data sampling frequency of 4 vs 5 kHz. Perhaps I have to just use two versions of |
Oh my bad. I told you the wrong option. You should be using --sample-rate not -f. Sorry about the inconvenience. |
No worries, thanks for the clarification |
Can this tool account for differences between the 4kHz and 5kHz sampling frequency (switchover after ONT sequencing software version
23.04
)?The text was updated successfully, but these errors were encountered: