Use of Viv in Xenium Explorer

[andreasg123]

In case you are curious, we went live today with Xenium Explorer that uses Viv for image viewing (OME TIFF with JPEG 2000): https://www.10xgenomics.com/products/xenium-in-situ/human-breast-dataset-explorer

Direct link to avoid the "Welcome" page: https://xenium.10xgenomics.com/?image=s3/10x.files/xenium/preview/hbreast/experiment.xenium&z=17&cell_f=true&cell_c=groups

Thanks for providing such as nice basis.

[ilan-gold]

That's so exciting! I've been looking forward to see what y'all are cooking up! Would you want us to add it to the front page i.e the
"In Action" section?

[andreasg123]

Thanks for the offer! It would be great if you would add a link to the "In Action" section.

[ngehlenborg]

Thank you!

[andreasg123]

Thanks for adding us to the front page. Could you please change the "x" in "10x" to lowercase to match our branding?

[ilan-gold]

Sure!

[ilan-gold]

@andreasg123 out of curiosity, why did you all end up using OME-TIFF? I thought y'all were using zarr for a while. Additionally, there's a "spatial" section of the zulip for scverse where there is discussion of an AnnData-based format for storing the sort of thing mentioned in https://cf.10xgenomics.com/supp/xenium/xenium_documentation.html. Haven't looked too closely, but this might be of interest to you!