CHANGELOG.md

Changelog

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Version [0.0.5]

Released: 2024-04-19

Added

• Add otpion to db.ProteinDatabase.add_fasta that allows skipping entries which headers could not be parsed, instead of raising a ValueError. (Suggested by @xeniorn)
• Added keys, values, and items methods to db.ProteinDatabase to allow more convenient iteration over the database's entries.

Changed

• Made decoy.reverse_sequence a private function.
• Renamed the protocol classes HeaderParser and HeaderWriter to AbstractHeaderParser and AbstractHeaderWriter to be consistent with the naming of the other abstract classes. (Suggested by @xeniorn)

Fixed

• Parsing a FASTA file returned invalid protein sequences when the sequence contained a terminal * character or lowercase letters. Terminal * characters are now removed from the sequence and the sequence is capitalized. (Contributed by @xeniorn)

Chores

• Added a GitHub Actions CI workflow for automated testing. (Contributed by @xeniorn)
• Minor corrections and additions to some docstrings.
• Added a Jupyter notebook containing usage examples for the ProFASTA library.