Machine name

[saravandekerke]

Hoi Rens,

Klopt het dat je nog wel de machine name moet aangeven? Ik zet in ieder geval in de terminal steeds -m FCC. Dat leek te helpen.

Sara

[holmrenser]

Hmmm zou niet moeten, ik zal er straks even naar kijken! Kan je me nog Paul
zn notities doorsturen?

Groetjes,

Rens

2014-10-02 10:57 GMT+02:00 saravandekerke [email protected]:

Hoi Rens,

Klopt het dat je nog wel de machine name moet aangeven? Ik zet in ieder
geval in de terminal steeds -m FCC. Dat leek te helpen.

Sara

—
Reply to this email directly or view it on GitHub
#3.

[saravandekerke]

Hier het bestandje van Paul!
Sara

---

Van: holmrenser [[email protected]]
Verzonden: donderdag 2 oktober 2014 14:07
Aan: holmrenser/IOGA
CC: Kerke, Sara van de
Onderwerp: Re: [IOGA] Machine name (#3)

Hmmm zou niet moeten, ik zal er straks even naar kijken! Kan je me nog Paul
zn notities doorsturen?

Groetjes,

Rens

2014-10-02 10:57 GMT+02:00 saravandekerke [email protected]:

Hoi Rens,

Klopt het dat je nog wel de machine name moet aangeven? Ik zet in ieder
geval in de terminal steeds -m FCC. Dat leek te helpen.

Sara

—
Reply to this email directly or view it on GitHub
#3.

—
Reply to this email directly or view it on GitHubhttps://github.com//issues/3#issuecomment-57620403.

[Lilian-ufsc]

Hi Rens,

I have a problem! I'm using IOGA.py, but I keep seeing this error: OSError: [Errno 2]. Would you please help me solve this problem?

[teste] Quality trimming with BBduk

Traceback (most recent call last):

File "./IOGA.py", line 408, in main(args.reference,args.name,args.forward,args.reverse,args.threads,args.insertsize,args.maxrounds,args.verbose)

File "./IOGA.py", line 352, in main

source,FP,RP,final_iteration = IOGA_loop(name,ref,forward,reverse,insertsize,threads,maxrounds)

File "./IOGA.py", line 288, in IOGA_loop

forward,reverse = run_bbduk(name,forward,reverse,threads)

File "./IOGA.py", line 187, in run_bbduk subprocess.call(['bbduk.sh','ref='+adapterdir,'in='+forward,'in2='+reverse,'out='+FP,'out2='+RP,'threads='+threads,'k=25','ktrim=rl','qtrim=t','minlength=32','-Xmx10G'],stderr=fnull,stdout=fnull)

File "/usr/lib/python2.7/subprocess.py", line 522, in call

return Popen(_popenargs, *_kwargs).wait()

File "/usr/lib/python2.7/subprocess.py", line 710, in init

errread, errwrite)

File "/usr/lib/python2.7/subprocess.py", line 1327, in _execute_child

raise child_exception

OSError: [Errno 2] No such file or directory

Best regards,

Lilian

[holmrenser]

@Lilian-ufsc I am opening a new issue for this. Let's continue there.

EDIT: new issue: is #4

[Lilian-ufsc]

Ok! I will wait. Thank you so much.