Abbreviations.tex

%\newacronym{rnaseq}{RNA-Seq}{RNA Sequencing, a technique to only sequence trh transcriptime}
\newacronym{bfr}{BFR}{Bulk Frequency Ratio}
\newacronym{bsa}{BSA}{Bulk Segregant Analysis}
\newacronym{snp}{SNP}{Single Nucleotide Polymorphism}
\newacronym{cdna}{cDNA}{coding deoxyribonucleic acid}
\newacronym{cna}{DNA}{deoxyribonucleic acid}
\newacronym{nil}{NIL}{Near Isogenic Line}
\newacronym{avs}{AVS}{Avocet S}
\newacronym{yr15}{\textit{Yr15}}{Avocet + \textit{Yr15}}
\newacronym{ucw}{UCW}{University of California Wheat}
\newacronym{iuapc}{IUPAC}{International Union of Pure and Applied Chemistry}
\newacronym{bc}{BC}{Back-cross}
\newacronym{css}{CSS}{Chinese Spring Chromosome arm survey sequence}
\newacronym{cs}{CS}{Chinese Spring}
\newacronym{ngs}{NGS}{Next Generation Sequencing}
\newacronym{qtl}{QTL}{Quantitative Trait Locus}
\newacronym{ssr}{SSR}{Simple Sequence Repeat}
\newacronym{mas}{MAS}{Marker Assisted Selection}
\newacronym{iwgsc}{IWGSC}{International Wheat Genome Sequencing 
Consortium}
\newacronym{est}{EST}{Encoding Sequence Tag}
\newacronym{dh}{DH}{Doubled Haploid}
\newacronym{ril}{RIL}{Recombinant Inbred Line}
\newacronym{pcr}{PCR}{Polymerase Chain Reaction}
\newacronym{indels}{indels}{insertions and deletions}
\newacronym{csv}{CSV}{comma separated values}
\newacronym{rdbms}{RDBMS}{Relational Database Management System}
\newacronym{sql}{SQL}{Standard Query Language}
\newacronym{tpm}{TPM}{Transcripts per Million of mapped reads}
\newacronym{fpkm}{FPKM}{Fragments Per Kilobase of transcript per Million of mapped reads}
\newacronym{rpkm}{RPKM}{Reads Per Kilobase of transcript per Million of mapped reads}
\newacronym{mvc}{MVC}{Model View Controller}
\newacronym{ror}{RoR}{Ruby on Rails}
\newacronym{acid}{ACID}{Atomicity, Consistency, Isolation and Durability}
\newacronym{gui}{GUI}{Graphical User Interface}
\newacronym{ebi}{EBI}{European Bioinformatics Institute}
\newacronym{sra}{SRA}{Short Read Archive}
\newacronym{api}{API}{Application Programming Interface}
\newacronym{tdbg}{T-DBG}{transcriptome de Bruijn Graph}
\newacronym{ncbi}{NCBI}{National Center for Biotechnology Information}
\newacronym{jic}{JIC}{John Innes Centre}
\newacronym{pst}{PST}{\textit{Puccinia striiformis} f. sp. \textit{tritici} }
\newacronym{expvip}{expVIP}{expression Visualisation and Integration Platform}
\newacronym{wgs}{WGS}{whole genome shotgun}
\newacronym{hpc}{HPC}{High Performance Computing}
\newacronym{ei}{EI}{Earlham Institute}