submit unsuccessfully

[MrGao1997]

when I submit the task an error occurred, how can I fix it?

Traceback (most recent call last):
File "/Share/app/FastFold/inference.py", line 36, in
from fastfold.model.fastnn import set_chunk_size
File "/Share/app/FastFold/fastfold/model/fastnn/init.py", line 1, in
from .msa import MSACore, ExtraMSACore, ExtraMSABlock, ExtraMSAStack
File "/Share/app/FastFold/fastfold/model/fastnn/msa.py", line 23, in
from fastfold.model.fastnn.kernel import LayerNorm, bias_dropout_add
File "/Share/app/FastFold/fastfold/model/fastnn/kernel/init.py", line 2, in
from .layer_norm import FusedLayerNorm as LayerNorm
File "/Share/app/FastFold/fastfold/model/fastnn/kernel/layer_norm.py", line 2, in
from .cuda_native.layer_norm import FusedLayerNormAffineFunction
File "/Share/app/FastFold/fastfold/model/fastnn/kernel/cuda_native/layer_norm.py", line 5, in
fastfold_layer_norm_cuda = importlib.import_module("fastfold_layer_norm_cuda")
File "/Share/app/miniconda3.9-pytorch/envs/fastfold/lib/python3.8/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
ModuleNotFoundError: No module named 'fastfold_layer_norm_cuda'

[Gy-Lu]

Hi, have you installed FastFold before using?

[MrGao1997]

I have installed it but maybe some package was not suitable, so it was always failure when I sbatch job. However, what confused me is I do not kown where the wrong is. And can you help me? Thanks a lot.

…

---- Replied Message ---- | From | ***@***.***> | | Date | 04/03/2023 14:22 | | To | ***@***.***> | | Cc | ***@***.***>***@***.***> | | Subject | Re: [hpcaitech/FastFold] submit unsuccessfully (Issue #172) | Hi, have you installed FastFold before using? — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: ***@***.***>

[Gy-Lu]

Hi, sorry for being late.
I am not sure about the environment you run the code and the one you install FastFold is the same one.
The error message indicates there is no CUDA kernel module that should be compiled when installing FastFold.

[awer-A]

@MrGao1997 I encountered the same issue, have you solved it now? Can you tell me?