From 06ed4b763fb0ff5248d981ed284146b918e2ef88 Mon Sep 17 00:00:00 2001 From: "Bruce W. Herr II" Date: Tue, 5 Dec 2023 13:09:19 -0500 Subject: [PATCH] Updated IDs to align better with cellxgene --- allen-brain-bakken-2021/registrations.yaml | 16 +- allen-brain-bakken-2021/rui_locations.jsonld | 146 ++++----- federated/rui_locations.jsonld | 278 +++++++++--------- hca-lung-meyer-2020/registrations.yaml | 12 +- hca-lung-meyer-2020/rui_locations.jsonld | 90 +++--- htan-intestine-sorger-2023/registrations.yaml | 2 +- nhlbi-lung-wang-2020/registrations.yaml | 37 ++- nhlbi-lung-wang-2020/rui_locations.jsonld | 42 +-- 8 files changed, 315 insertions(+), 308 deletions(-) diff --git a/allen-brain-bakken-2021/registrations.yaml b/allen-brain-bakken-2021/registrations.yaml index cd2102f..257d625 100644 --- a/allen-brain-bakken-2021/registrations.yaml +++ b/allen-brain-bakken-2021/registrations.yaml @@ -4,20 +4,20 @@ provider_name: Allen Institute provider_uuid: 8dca7930-e16b-4301-9ad3-de202225d27f defaults: - id: https://www.nature.com/articles/s41586-021-03465-8 - thumbnail: https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg + id: https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee + thumbnail: https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg link: https://www.nature.com/articles/s41586-021-03465-8 publication: https://doi.org/10.1038/s41586-021-03465-8 donors: - sex: Female age: 60 - id: http://purl.org/ccf/1.5/allen-brain/H18.30.001 + id: https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H18.30.001_Donor description: "Entered 8/29/2022, Raymond Sanchez, Allen Institute for Brain Science" samples: - rui_location: Block1_10X.json sections: - datasets: - - id: http://purl.org/ccf/1.5/allen-brain/H18.30.001.CX48.M1C.001/Block1_10X#Dataset + - id: https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H18.30.001.CX48.M1C.001/Block1_10X#Dataset - description: "Data/Assay Types: 10x" - technology: 10X - rui_location: Block2_10X.json @@ -32,7 +32,7 @@ - technology: OTHER - sex: Male age: 50 - id: http://purl.org/ccf/1.5/allen-brain/H18.30.002 + id: https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H18.30.002_Donor description: "Entered 8/29/2022, Raymond Sanchez, Allen Institute for Brain Science" samples: - rui_location: Block3_10X.json @@ -47,7 +47,7 @@ - technology: OTHER - sex: Female age: 43 - id: http://purl.org/ccf/1.5/allen-brain/H200.1023 + id: https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1023_Donor description: "Entered 8/29/2022, Raymond Sanchez, Allen Institute for Brain Science" samples: - rui_location: Block3_SSv4.json @@ -62,7 +62,7 @@ - technology: OTHER - sex: Male age: 50 - id: http://purl.org/ccf/1.5/allen-brain/H200.1025 + id: https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1025_Donor description: "Entered 8/29/2022, Raymond Sanchez, Allen Institute for Brain Science" samples: - rui_location: Block5_SSv4.json @@ -80,7 +80,7 @@ - technology: OTHER - sex: Male age: 54 - id: http://purl.org/ccf/1.5/allen-brain/H200.1030 + id: https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1030_Donor description: "Entered 8/29/2022, Raymond Sanchez, Allen Institute for Brain Science" samples: - rui_location: Block7_SSv4.json diff --git a/allen-brain-bakken-2021/rui_locations.jsonld b/allen-brain-bakken-2021/rui_locations.jsonld index 615dca5..4832617 100644 --- a/allen-brain-bakken-2021/rui_locations.jsonld +++ b/allen-brain-bakken-2021/rui_locations.jsonld @@ -2,7 +2,7 @@ "@context": "https://hubmapconsortium.github.io/ccf-ontology/ccf-context.jsonld", "@graph": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.001", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H18.30.001_Donor", "@type": "Donor", "label": "Female, Age 60", "description": "Entered 8/29/2022, Raymond Sanchez, Allen Institute for Brain Science", @@ -14,7 +14,7 @@ "sex": "Female", "samples": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.001#TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H18.30.001_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -63,7 +63,7 @@ }, "sections": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.001#TissueBlock1_TissueSection1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H18.30.001_Donor_TissueBlock1_TissueSection1", "@type": "Sample", "sample_type": "Tissue Section", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -72,39 +72,39 @@ "section_size": 10, "datasets": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.001.CX48.M1C.001/Block1_10X#Dataset", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H18.30.001.CX48.M1C.001/Block1_10X#Dataset", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: undefined, ", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" }, { - "@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.001#TissueBlock1_TissueSection1_Dataset2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H18.30.001_Donor_TissueBlock1_TissueSection1_Dataset2", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: 10x", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" }, { - "@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.001#TissueBlock1_TissueSection1_Dataset3", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H18.30.001_Donor_TissueBlock1_TissueSection1_Dataset3", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: 10X, ", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", "technology": "10X", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" } ] } ] }, { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor1_TissueBlock2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor1_TissueBlock2", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -154,7 +154,7 @@ }, "sections": [ { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor1_TissueBlock2_TissueSection1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor1_TissueBlock2_TissueSection1", "@type": "Sample", "sample_type": "Tissue Section", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -163,30 +163,30 @@ "section_size": 10, "datasets": [ { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor1_TissueBlock2_TissueSection1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor1_TissueBlock2_TissueSection1_Dataset1", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: 10x", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" }, { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor1_TissueBlock2_TissueSection1_Dataset2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor1_TissueBlock2_TissueSection1_Dataset2", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: 10X, ", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", "technology": "10X", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" } ] } ] }, { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor1_TissueBlock3", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor1_TissueBlock3", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -236,7 +236,7 @@ }, "sections": [ { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor1_TissueBlock3_TissueSection1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor1_TissueBlock3_TissueSection1", "@type": "Sample", "sample_type": "Tissue Section", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -245,23 +245,23 @@ "section_size": 10, "datasets": [ { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor1_TissueBlock3_TissueSection1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor1_TissueBlock3_TissueSection1_Dataset1", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: SSv4", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" }, { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor1_TissueBlock3_TissueSection1_Dataset2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor1_TissueBlock3_TissueSection1_Dataset2", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: OTHER, ", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", "technology": "OTHER", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" } ] } @@ -270,7 +270,7 @@ ] }, { - "@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.002", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H18.30.002_Donor", "@type": "Donor", "label": "Male, Age 50", "description": "Entered 8/29/2022, Raymond Sanchez, Allen Institute for Brain Science", @@ -282,7 +282,7 @@ "sex": "Male", "samples": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.002#TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H18.30.002_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -331,7 +331,7 @@ }, "sections": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.002#TissueBlock1_TissueSection1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H18.30.002_Donor_TissueBlock1_TissueSection1", "@type": "Sample", "sample_type": "Tissue Section", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -340,30 +340,30 @@ "section_size": 10, "datasets": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.002#TissueBlock1_TissueSection1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H18.30.002_Donor_TissueBlock1_TissueSection1_Dataset1", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: 10x", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" }, { - "@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.002#TissueBlock1_TissueSection1_Dataset2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H18.30.002_Donor_TissueBlock1_TissueSection1_Dataset2", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: 10X, ", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", "technology": "10X", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" } ] } ] }, { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor2_TissueBlock2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor2_TissueBlock2", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -412,7 +412,7 @@ }, "sections": [ { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor2_TissueBlock2_TissueSection1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor2_TissueBlock2_TissueSection1", "@type": "Sample", "sample_type": "Tissue Section", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -421,23 +421,23 @@ "section_size": 10, "datasets": [ { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor2_TissueBlock2_TissueSection1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor2_TissueBlock2_TissueSection1_Dataset1", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: SSv4", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" }, { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor2_TissueBlock2_TissueSection1_Dataset2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor2_TissueBlock2_TissueSection1_Dataset2", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: OTHER, ", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", "technology": "OTHER", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" } ] } @@ -446,7 +446,7 @@ ] }, { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1023", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1023_Donor", "@type": "Donor", "label": "Female, Age 43", "description": "Entered 8/29/2022, Raymond Sanchez, Allen Institute for Brain Science", @@ -458,7 +458,7 @@ "sex": "Female", "samples": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1023#TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1023_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -507,7 +507,7 @@ }, "sections": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1023#TissueBlock1_TissueSection1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1023_Donor_TissueBlock1_TissueSection1", "@type": "Sample", "sample_type": "Tissue Section", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -516,30 +516,30 @@ "section_size": 10, "datasets": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1023#TissueBlock1_TissueSection1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1023_Donor_TissueBlock1_TissueSection1_Dataset1", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: SSv4", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" }, { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1023#TissueBlock1_TissueSection1_Dataset2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1023_Donor_TissueBlock1_TissueSection1_Dataset2", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: OTHER, ", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", "technology": "OTHER", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" } ] } ] }, { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor3_TissueBlock2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor3_TissueBlock2", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -590,7 +590,7 @@ }, "sections": [ { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor3_TissueBlock2_TissueSection1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor3_TissueBlock2_TissueSection1", "@type": "Sample", "sample_type": "Tissue Section", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -599,23 +599,23 @@ "section_size": 20, "datasets": [ { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor3_TissueBlock2_TissueSection1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor3_TissueBlock2_TissueSection1_Dataset1", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: SSv4", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" }, { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor3_TissueBlock2_TissueSection1_Dataset2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor3_TissueBlock2_TissueSection1_Dataset2", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: OTHER, ", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", "technology": "OTHER", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" } ] } @@ -624,7 +624,7 @@ ] }, { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1025", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1025_Donor", "@type": "Donor", "label": "Male, Age 50", "description": "Entered 8/29/2022, Raymond Sanchez, Allen Institute for Brain Science", @@ -636,7 +636,7 @@ "sex": "Male", "samples": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1025#TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1025_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -686,7 +686,7 @@ "section_unit": "millimeter", "sections": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1025#TissueBlock1_TissueSection1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1025_Donor_TissueBlock1_TissueSection1", "@type": "Sample", "sample_type": "Tissue Section", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -695,30 +695,30 @@ "section_size": 10, "datasets": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1025#TissueBlock1_TissueSection1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1025_Donor_TissueBlock1_TissueSection1_Dataset1", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: SSv4", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" }, { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1025#TissueBlock1_TissueSection1_Dataset2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1025_Donor_TissueBlock1_TissueSection1_Dataset2", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: OTHER, ", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", "technology": "OTHER", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" } ] } ] }, { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor4_TissueBlock2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor4_TissueBlock2", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -769,7 +769,7 @@ }, "sections": [ { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor4_TissueBlock2_TissueSection1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor4_TissueBlock2_TissueSection1", "@type": "Sample", "sample_type": "Tissue Section", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -778,23 +778,23 @@ "section_size": 10, "datasets": [ { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor4_TissueBlock2_TissueSection1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor4_TissueBlock2_TissueSection1_Dataset1", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: SSv4", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" }, { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor4_TissueBlock2_TissueSection1_Dataset2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor4_TissueBlock2_TissueSection1_Dataset2", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: OTHER, ", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", "technology": "OTHER", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" } ] } @@ -803,7 +803,7 @@ ] }, { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1030", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1030_Donor", "@type": "Donor", "label": "Male, Age 54", "description": "Entered 8/29/2022, Raymond Sanchez, Allen Institute for Brain Science", @@ -815,7 +815,7 @@ "sex": "Male", "samples": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1030#TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1030_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -865,7 +865,7 @@ "section_unit": "millimeter", "sections": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1030#TissueBlock1_TissueSection1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1030_Donor_TissueBlock1_TissueSection1", "@type": "Sample", "sample_type": "Tissue Section", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -874,30 +874,30 @@ "section_size": 10, "datasets": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1030#TissueBlock1_TissueSection1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1030_Donor_TissueBlock1_TissueSection1_Dataset1", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: SSv4", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" }, { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1030#TissueBlock1_TissueSection1_Dataset2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1030_Donor_TissueBlock1_TissueSection1_Dataset2", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: OTHER, ", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", "technology": "OTHER", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" } ] } ] }, { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor5_TissueBlock2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor5_TissueBlock2", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -946,7 +946,7 @@ }, "sections": [ { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor5_TissueBlock2_TissueSection1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor5_TissueBlock2_TissueSection1", "@type": "Sample", "sample_type": "Tissue Section", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -955,23 +955,23 @@ "section_size": 10, "datasets": [ { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor5_TissueBlock2_TissueSection1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor5_TissueBlock2_TissueSection1_Dataset1", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: SSv4", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" }, { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor5_TissueBlock2_TissueSection1_Dataset2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor5_TissueBlock2_TissueSection1_Dataset2", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: OTHER, ", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", "technology": "OTHER", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" } ] } diff --git a/federated/rui_locations.jsonld b/federated/rui_locations.jsonld index 125ddd2..4cc0d45 100644 --- a/federated/rui_locations.jsonld +++ b/federated/rui_locations.jsonld @@ -2,7 +2,7 @@ "@context": "https://hubmapconsortium.github.io/ccf-ontology/ccf-context.jsonld", "@graph": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.001", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H18.30.001_Donor", "@type": "Donor", "label": "Female, Age 60", "description": "Entered 8/29/2022, Raymond Sanchez, Allen Institute for Brain Science", @@ -14,7 +14,7 @@ "sex": "Female", "samples": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.001#TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H18.30.001_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -63,7 +63,7 @@ }, "sections": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.001#TissueBlock1_TissueSection1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H18.30.001_Donor_TissueBlock1_TissueSection1", "@type": "Sample", "sample_type": "Tissue Section", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -72,39 +72,39 @@ "section_size": 10, "datasets": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.001.CX48.M1C.001/Block1_10X#Dataset", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H18.30.001.CX48.M1C.001/Block1_10X#Dataset", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: undefined, ", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" }, { - "@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.001#TissueBlock1_TissueSection1_Dataset2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H18.30.001_Donor_TissueBlock1_TissueSection1_Dataset2", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: 10x", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" }, { - "@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.001#TissueBlock1_TissueSection1_Dataset3", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H18.30.001_Donor_TissueBlock1_TissueSection1_Dataset3", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: 10X, ", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", "technology": "10X", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" } ] } ] }, { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor1_TissueBlock2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor1_TissueBlock2", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -154,7 +154,7 @@ }, "sections": [ { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor1_TissueBlock2_TissueSection1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor1_TissueBlock2_TissueSection1", "@type": "Sample", "sample_type": "Tissue Section", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -163,30 +163,30 @@ "section_size": 10, "datasets": [ { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor1_TissueBlock2_TissueSection1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor1_TissueBlock2_TissueSection1_Dataset1", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: 10x", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" }, { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor1_TissueBlock2_TissueSection1_Dataset2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor1_TissueBlock2_TissueSection1_Dataset2", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: 10X, ", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", "technology": "10X", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" } ] } ] }, { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor1_TissueBlock3", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor1_TissueBlock3", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -236,7 +236,7 @@ }, "sections": [ { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor1_TissueBlock3_TissueSection1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor1_TissueBlock3_TissueSection1", "@type": "Sample", "sample_type": "Tissue Section", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -245,23 +245,23 @@ "section_size": 10, "datasets": [ { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor1_TissueBlock3_TissueSection1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor1_TissueBlock3_TissueSection1_Dataset1", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: SSv4", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" }, { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor1_TissueBlock3_TissueSection1_Dataset2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor1_TissueBlock3_TissueSection1_Dataset2", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: OTHER, ", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", "technology": "OTHER", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" } ] } @@ -270,7 +270,7 @@ ] }, { - "@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.002", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H18.30.002_Donor", "@type": "Donor", "label": "Male, Age 50", "description": "Entered 8/29/2022, Raymond Sanchez, Allen Institute for Brain Science", @@ -282,7 +282,7 @@ "sex": "Male", "samples": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.002#TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H18.30.002_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -331,7 +331,7 @@ }, "sections": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.002#TissueBlock1_TissueSection1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H18.30.002_Donor_TissueBlock1_TissueSection1", "@type": "Sample", "sample_type": "Tissue Section", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -340,30 +340,30 @@ "section_size": 10, "datasets": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.002#TissueBlock1_TissueSection1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H18.30.002_Donor_TissueBlock1_TissueSection1_Dataset1", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: 10x", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" }, { - "@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.002#TissueBlock1_TissueSection1_Dataset2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H18.30.002_Donor_TissueBlock1_TissueSection1_Dataset2", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: 10X, ", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", "technology": "10X", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" } ] } ] }, { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor2_TissueBlock2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor2_TissueBlock2", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -412,7 +412,7 @@ }, "sections": [ { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor2_TissueBlock2_TissueSection1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor2_TissueBlock2_TissueSection1", "@type": "Sample", "sample_type": "Tissue Section", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -421,23 +421,23 @@ "section_size": 10, "datasets": [ { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor2_TissueBlock2_TissueSection1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor2_TissueBlock2_TissueSection1_Dataset1", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: SSv4", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" }, { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor2_TissueBlock2_TissueSection1_Dataset2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor2_TissueBlock2_TissueSection1_Dataset2", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: OTHER, ", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", "technology": "OTHER", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" } ] } @@ -446,7 +446,7 @@ ] }, { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1023", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1023_Donor", "@type": "Donor", "label": "Female, Age 43", "description": "Entered 8/29/2022, Raymond Sanchez, Allen Institute for Brain Science", @@ -458,7 +458,7 @@ "sex": "Female", "samples": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1023#TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1023_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -507,7 +507,7 @@ }, "sections": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1023#TissueBlock1_TissueSection1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1023_Donor_TissueBlock1_TissueSection1", "@type": "Sample", "sample_type": "Tissue Section", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -516,30 +516,30 @@ "section_size": 10, "datasets": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1023#TissueBlock1_TissueSection1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1023_Donor_TissueBlock1_TissueSection1_Dataset1", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: SSv4", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" }, { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1023#TissueBlock1_TissueSection1_Dataset2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1023_Donor_TissueBlock1_TissueSection1_Dataset2", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: OTHER, ", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", "technology": "OTHER", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" } ] } ] }, { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor3_TissueBlock2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor3_TissueBlock2", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -590,7 +590,7 @@ }, "sections": [ { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor3_TissueBlock2_TissueSection1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor3_TissueBlock2_TissueSection1", "@type": "Sample", "sample_type": "Tissue Section", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -599,23 +599,23 @@ "section_size": 20, "datasets": [ { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor3_TissueBlock2_TissueSection1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor3_TissueBlock2_TissueSection1_Dataset1", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: SSv4", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" }, { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor3_TissueBlock2_TissueSection1_Dataset2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor3_TissueBlock2_TissueSection1_Dataset2", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: OTHER, ", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", "technology": "OTHER", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" } ] } @@ -624,7 +624,7 @@ ] }, { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1025", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1025_Donor", "@type": "Donor", "label": "Male, Age 50", "description": "Entered 8/29/2022, Raymond Sanchez, Allen Institute for Brain Science", @@ -636,7 +636,7 @@ "sex": "Male", "samples": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1025#TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1025_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -686,7 +686,7 @@ "section_unit": "millimeter", "sections": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1025#TissueBlock1_TissueSection1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1025_Donor_TissueBlock1_TissueSection1", "@type": "Sample", "sample_type": "Tissue Section", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -695,30 +695,30 @@ "section_size": 10, "datasets": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1025#TissueBlock1_TissueSection1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1025_Donor_TissueBlock1_TissueSection1_Dataset1", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: SSv4", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" }, { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1025#TissueBlock1_TissueSection1_Dataset2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1025_Donor_TissueBlock1_TissueSection1_Dataset2", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: OTHER, ", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", "technology": "OTHER", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" } ] } ] }, { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor4_TissueBlock2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor4_TissueBlock2", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -769,7 +769,7 @@ }, "sections": [ { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor4_TissueBlock2_TissueSection1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor4_TissueBlock2_TissueSection1", "@type": "Sample", "sample_type": "Tissue Section", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -778,23 +778,23 @@ "section_size": 10, "datasets": [ { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor4_TissueBlock2_TissueSection1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor4_TissueBlock2_TissueSection1_Dataset1", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: SSv4", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" }, { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor4_TissueBlock2_TissueSection1_Dataset2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor4_TissueBlock2_TissueSection1_Dataset2", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: OTHER, ", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", "technology": "OTHER", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" } ] } @@ -803,7 +803,7 @@ ] }, { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1030", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1030_Donor", "@type": "Donor", "label": "Male, Age 54", "description": "Entered 8/29/2022, Raymond Sanchez, Allen Institute for Brain Science", @@ -815,7 +815,7 @@ "sex": "Male", "samples": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1030#TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1030_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -865,7 +865,7 @@ "section_unit": "millimeter", "sections": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1030#TissueBlock1_TissueSection1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1030_Donor_TissueBlock1_TissueSection1", "@type": "Sample", "sample_type": "Tissue Section", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -874,30 +874,30 @@ "section_size": 10, "datasets": [ { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1030#TissueBlock1_TissueSection1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1030_Donor_TissueBlock1_TissueSection1_Dataset1", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: SSv4", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" }, { - "@id": "http://purl.org/ccf/1.5/allen-brain/H200.1030#TissueBlock1_TissueSection1_Dataset2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#H200.1030_Donor_TissueBlock1_TissueSection1_Dataset2", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: OTHER, ", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", "technology": "OTHER", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" } ] } ] }, { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor5_TissueBlock2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor5_TissueBlock2", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -946,7 +946,7 @@ }, "sections": [ { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor5_TissueBlock2_TissueSection1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor5_TissueBlock2_TissueSection1", "@type": "Sample", "sample_type": "Tissue Section", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", @@ -955,23 +955,23 @@ "section_size": 10, "datasets": [ { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor5_TissueBlock2_TissueSection1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor5_TissueBlock2_TissueSection1_Dataset1", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: SSv4", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" }, { - "@id": "https://www.nature.com/articles/s41586-021-03465-8#Donor5_TissueBlock2_TissueSection1_Dataset2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/367d95c0-0eb0-4dae-8276-9407239421ee#Donor5_TissueBlock2_TissueSection1_Dataset2", "@type": "Dataset", "label": "Registered 7/28/2022, Raymond Sanchez, Allen Institute", "description": "Data/Assay Types: OTHER, ", "link": "https://www.nature.com/articles/s41586-021-03465-8", "publication": "https://doi.org/10.1038/s41586-021-03465-8", "technology": "OTHER", - "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-institute/assets/logo.jpg" + "thumbnail": "https://hubmapconsortium.github.io/hra-registrations/allen-brain-bakken-2021/assets/logo.jpg" } ] } @@ -13312,7 +13312,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/343B#Donor", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#343B_Donor", "@type": "Donor", "label": "Female, Age 70", "description": "Entered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -13324,7 +13324,7 @@ "sex": "Female", "samples": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/343B#Donor_TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#343B_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -13372,7 +13372,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/343B#Donor_TissueBlock1_TissueBlock1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#343B_Donor_TissueBlock1_TissueBlock1_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -13384,7 +13384,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor1_TissueBlock2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor1_TissueBlock2", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -13432,7 +13432,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor1_TissueBlock2_TissueBlock2_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor1_TissueBlock2_TissueBlock2_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -13444,7 +13444,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor1_TissueBlock3", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor1_TissueBlock3", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -13492,7 +13492,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor1_TissueBlock3_TissueBlock3_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor1_TissueBlock3_TissueBlock3_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -13504,7 +13504,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor1_TissueBlock4", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor1_TissueBlock4", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -13552,7 +13552,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor1_TissueBlock4_TissueBlock4_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor1_TissueBlock4_TissueBlock4_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -13566,7 +13566,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/356C#Donor", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#356C_Donor", "@type": "Donor", "label": "Female, Age 40", "description": "Entered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -13578,7 +13578,7 @@ "sex": "Female", "samples": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/356C#Donor_TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#356C_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -13626,7 +13626,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/356C#Donor_TissueBlock1_TissueBlock1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#356C_Donor_TissueBlock1_TissueBlock1_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -13638,7 +13638,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor2_TissueBlock2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor2_TissueBlock2", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -13686,7 +13686,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor2_TissueBlock2_TissueBlock2_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor2_TissueBlock2_TissueBlock2_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -13698,7 +13698,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor2_TissueBlock3", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor2_TissueBlock3", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -13746,7 +13746,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor2_TissueBlock3_TissueBlock3_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor2_TissueBlock3_TissueBlock3_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -13758,7 +13758,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor2_TissueBlock4", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor2_TissueBlock4", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -13806,7 +13806,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor2_TissueBlock4_TissueBlock4_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor2_TissueBlock4_TissueBlock4_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -13820,7 +13820,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/367C#Donor", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#367C_Donor", "@type": "Donor", "label": "Male, Age 65", "description": "Entered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -13832,7 +13832,7 @@ "sex": "Male", "samples": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/367C#Donor_TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#367C_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -13880,7 +13880,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/367C#Donor_TissueBlock1_TissueBlock1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#367C_Donor_TissueBlock1_TissueBlock1_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -13892,7 +13892,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor3_TissueBlock2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor3_TissueBlock2", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -13940,7 +13940,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor3_TissueBlock2_TissueBlock2_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor3_TissueBlock2_TissueBlock2_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -13952,7 +13952,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor3_TissueBlock3", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor3_TissueBlock3", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -14000,7 +14000,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor3_TissueBlock3_TissueBlock3_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor3_TissueBlock3_TissueBlock3_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -14012,7 +14012,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor3_TissueBlock4", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor3_TissueBlock4", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -14060,7 +14060,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor3_TissueBlock4_TissueBlock4_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor3_TissueBlock4_TissueBlock4_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -14074,7 +14074,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/368C#Donor", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#368C_Donor", "@type": "Donor", "label": "Male, Age 55", "description": "Entered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -14086,7 +14086,7 @@ "sex": "Male", "samples": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/368C#Donor_TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#368C_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -14134,7 +14134,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/368C#Donor_TissueBlock1_TissueBlock1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#368C_Donor_TissueBlock1_TissueBlock1_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -14146,7 +14146,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor4_TissueBlock2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor4_TissueBlock2", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -14194,7 +14194,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor4_TissueBlock2_TissueBlock2_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor4_TissueBlock2_TissueBlock2_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -14206,7 +14206,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor4_TissueBlock3", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor4_TissueBlock3", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -14254,7 +14254,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor4_TissueBlock3_TissueBlock3_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor4_TissueBlock3_TissueBlock3_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -14266,7 +14266,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor4_TissueBlock4", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor4_TissueBlock4", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -14314,7 +14314,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor4_TissueBlock4_TissueBlock4_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor4_TissueBlock4_TissueBlock4_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -14328,7 +14328,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/390C#Donor", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#390C_Donor", "@type": "Donor", "label": "Female, Age 65", "description": "Entered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -14340,7 +14340,7 @@ "sex": "Female", "samples": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/390C#Donor_TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#390C_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -14388,7 +14388,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/390C#Donor_TissueBlock1_TissueBlock1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#390C_Donor_TissueBlock1_TissueBlock1_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -14400,7 +14400,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor5_TissueBlock2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor5_TissueBlock2", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -14448,7 +14448,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor5_TissueBlock2_TissueBlock2_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor5_TissueBlock2_TissueBlock2_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -14460,7 +14460,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor5_TissueBlock3", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor5_TissueBlock3", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -14508,7 +14508,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor5_TissueBlock3_TissueBlock3_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor5_TissueBlock3_TissueBlock3_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -14520,7 +14520,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor5_TissueBlock4", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor5_TissueBlock4", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -14568,7 +14568,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor5_TissueBlock4_TissueBlock4_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor5_TissueBlock4_TissueBlock4_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -14801,7 +14801,7 @@ ] }, { - "@id": "http://purl.org/ccf/1.5/NHLBI/D032#Donor", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D032_Donor", "@type": "Donor", "label": "Male, Age 3", "description": "Entered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -14813,7 +14813,7 @@ "sex": "Male", "samples": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D032#Donor_TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D032_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -14863,7 +14863,7 @@ }, "datasets": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D032#Donor_TissueBlock1_TissueBlock1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D032$lung", "@type": "Dataset", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", "description": "Data/Assay Types: OTHER, ", @@ -14877,7 +14877,7 @@ ] }, { - "@id": "http://purl.org/ccf/1.5/NHLBI/D046#Donor", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D046_Donor", "@type": "Donor", "label": "Male, Age 3", "description": "Entered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -14889,7 +14889,7 @@ "sex": "Male", "samples": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D046#Donor_TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D046_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -14939,7 +14939,7 @@ }, "datasets": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D046#Donor_TissueBlock1_TissueBlock1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D046$lung", "@type": "Dataset", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", "description": "Data/Assay Types: OTHER, ", @@ -14953,7 +14953,7 @@ ] }, { - "@id": "http://purl.org/ccf/1.5/NHLBI/D139#Donor", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D139_Donor", "@type": "Donor", "label": "Female, Age 3", "description": "Entered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -14965,7 +14965,7 @@ "sex": "Female", "samples": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D139#Donor_TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D139_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -15014,7 +15014,7 @@ }, "datasets": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D139#Donor_TissueBlock1_TissueBlock1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D139$lung", "@type": "Dataset", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", "description": "Data/Assay Types: OTHER, ", @@ -15028,7 +15028,7 @@ ] }, { - "@id": "http://purl.org/ccf/1.5/NHLBI/D122#Donor", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D122_Donor", "@type": "Donor", "label": "Male, Age 31", "description": "Entered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -15040,7 +15040,7 @@ "sex": "Male", "samples": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D122#Donor_TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D122_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -15090,7 +15090,7 @@ }, "datasets": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D122#Donor_TissueBlock1_TissueBlock1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D122$lung", "@type": "Dataset", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", "description": "Data/Assay Types: OTHER, ", @@ -15104,7 +15104,7 @@ ] }, { - "@id": "http://purl.org/ccf/1.5/NHLBI/D175#Donor", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D175_Donor", "@type": "Donor", "label": "Male, Age 29", "description": "Entered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -15116,7 +15116,7 @@ "sex": "Male", "samples": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D175#Donor_TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D175_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -15166,7 +15166,7 @@ }, "datasets": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D175#Donor_TissueBlock1_TissueBlock1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D175$lung", "@type": "Dataset", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", "description": "Data/Assay Types: OTHER, ", @@ -15180,7 +15180,7 @@ ] }, { - "@id": "http://purl.org/ccf/1.5/NHLBI/D231#Donor", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D231_Donor", "@type": "Donor", "label": "Female, Age 33", "description": "Entered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -15192,7 +15192,7 @@ "sex": "Female", "samples": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D231#Donor_TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D231_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -15241,7 +15241,7 @@ }, "datasets": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D231#Donor_TissueBlock1_TissueBlock1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D231$lung", "@type": "Dataset", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", "description": "Data/Assay Types: OTHER, ", @@ -15255,7 +15255,7 @@ ] }, { - "@id": "http://purl.org/ccf/1.5/NHLBI/D110#Donor", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D110_Donor", "@type": "Donor", "label": "Male", "description": "Entered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -15267,7 +15267,7 @@ "sex": "Male", "samples": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D110#Donor_TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D110_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -15317,7 +15317,7 @@ }, "datasets": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D110#Donor_TissueBlock1_TissueBlock1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D110$lung", "@type": "Dataset", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", "description": "Data/Assay Types: OTHER, ", diff --git a/hca-lung-meyer-2020/registrations.yaml b/hca-lung-meyer-2020/registrations.yaml index 0deed12..c2f58bd 100644 --- a/hca-lung-meyer-2020/registrations.yaml +++ b/hca-lung-meyer-2020/registrations.yaml @@ -4,14 +4,14 @@ provider_name: Wellcome Sanger Institute provider_uuid: 7cf72052-10d0-4fa8-b659-4067aa1ffdf3 defaults: - id: https://doi.org/10.1186/s13059-019-1906-x + id: https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91 thumbnail: assets/logo.jpg link: https://doi.org/10.1186/s13059-019-1906-x publication: https://doi.org/10.1186/s13059-019-1906-x donors: - sex: Female age: 70 - id: https://doi.org/10.1186/s13059-019-1906-x/343B#Donor + id: https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#343B_Donor samples: - rui_location: female1_closest_to_center_plane.json datasets: @@ -27,7 +27,7 @@ - technology: OTHER - sex: Female age: 40 - id: https://doi.org/10.1186/s13059-019-1906-x/356C#Donor + id: https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#356C_Donor samples: - rui_location: female1_closest_to_center_plane.json datasets: @@ -43,7 +43,7 @@ - technology: OTHER - sex: Male age: 65 - id: https://doi.org/10.1186/s13059-019-1906-x/367C#Donor + id: https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#367C_Donor samples: - rui_location: male1_closest_to_center_plane.json datasets: @@ -59,7 +59,7 @@ - technology: OTHER - sex: Male age: 55 - id: https://doi.org/10.1186/s13059-019-1906-x/368C#Donor + id: https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#368C_Donor samples: - rui_location: male1_closest_to_center_plane.json datasets: @@ -75,7 +75,7 @@ - technology: OTHER - sex: Female age: 65 - id: https://doi.org/10.1186/s13059-019-1906-x/390C#Donor + id: https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#390C_Donor samples: - rui_location: female1_closest_to_center_plane.json datasets: diff --git a/hca-lung-meyer-2020/rui_locations.jsonld b/hca-lung-meyer-2020/rui_locations.jsonld index eb4747e..167cfa8 100644 --- a/hca-lung-meyer-2020/rui_locations.jsonld +++ b/hca-lung-meyer-2020/rui_locations.jsonld @@ -2,7 +2,7 @@ "@context": "https://hubmapconsortium.github.io/ccf-ontology/ccf-context.jsonld", "@graph": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/343B#Donor", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#343B_Donor", "@type": "Donor", "label": "Female, Age 70", "description": "Entered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -14,7 +14,7 @@ "sex": "Female", "samples": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/343B#Donor_TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#343B_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -62,7 +62,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/343B#Donor_TissueBlock1_TissueBlock1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#343B_Donor_TissueBlock1_TissueBlock1_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -74,7 +74,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor1_TissueBlock2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor1_TissueBlock2", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -122,7 +122,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor1_TissueBlock2_TissueBlock2_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor1_TissueBlock2_TissueBlock2_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -134,7 +134,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor1_TissueBlock3", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor1_TissueBlock3", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -182,7 +182,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor1_TissueBlock3_TissueBlock3_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor1_TissueBlock3_TissueBlock3_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -194,7 +194,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor1_TissueBlock4", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor1_TissueBlock4", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -242,7 +242,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor1_TissueBlock4_TissueBlock4_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor1_TissueBlock4_TissueBlock4_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -256,7 +256,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/356C#Donor", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#356C_Donor", "@type": "Donor", "label": "Female, Age 40", "description": "Entered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -268,7 +268,7 @@ "sex": "Female", "samples": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/356C#Donor_TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#356C_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -316,7 +316,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/356C#Donor_TissueBlock1_TissueBlock1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#356C_Donor_TissueBlock1_TissueBlock1_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -328,7 +328,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor2_TissueBlock2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor2_TissueBlock2", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -376,7 +376,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor2_TissueBlock2_TissueBlock2_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor2_TissueBlock2_TissueBlock2_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -388,7 +388,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor2_TissueBlock3", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor2_TissueBlock3", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -436,7 +436,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor2_TissueBlock3_TissueBlock3_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor2_TissueBlock3_TissueBlock3_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -448,7 +448,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor2_TissueBlock4", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor2_TissueBlock4", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -496,7 +496,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor2_TissueBlock4_TissueBlock4_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor2_TissueBlock4_TissueBlock4_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -510,7 +510,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/367C#Donor", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#367C_Donor", "@type": "Donor", "label": "Male, Age 65", "description": "Entered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -522,7 +522,7 @@ "sex": "Male", "samples": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/367C#Donor_TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#367C_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -570,7 +570,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/367C#Donor_TissueBlock1_TissueBlock1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#367C_Donor_TissueBlock1_TissueBlock1_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -582,7 +582,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor3_TissueBlock2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor3_TissueBlock2", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -630,7 +630,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor3_TissueBlock2_TissueBlock2_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor3_TissueBlock2_TissueBlock2_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -642,7 +642,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor3_TissueBlock3", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor3_TissueBlock3", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -690,7 +690,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor3_TissueBlock3_TissueBlock3_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor3_TissueBlock3_TissueBlock3_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -702,7 +702,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor3_TissueBlock4", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor3_TissueBlock4", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -750,7 +750,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor3_TissueBlock4_TissueBlock4_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor3_TissueBlock4_TissueBlock4_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -764,7 +764,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/368C#Donor", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#368C_Donor", "@type": "Donor", "label": "Male, Age 55", "description": "Entered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -776,7 +776,7 @@ "sex": "Male", "samples": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/368C#Donor_TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#368C_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -824,7 +824,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/368C#Donor_TissueBlock1_TissueBlock1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#368C_Donor_TissueBlock1_TissueBlock1_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -836,7 +836,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor4_TissueBlock2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor4_TissueBlock2", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -884,7 +884,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor4_TissueBlock2_TissueBlock2_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor4_TissueBlock2_TissueBlock2_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -896,7 +896,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor4_TissueBlock3", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor4_TissueBlock3", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -944,7 +944,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor4_TissueBlock3_TissueBlock3_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor4_TissueBlock3_TissueBlock3_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -956,7 +956,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor4_TissueBlock4", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor4_TissueBlock4", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -1004,7 +1004,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor4_TissueBlock4_TissueBlock4_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor4_TissueBlock4_TissueBlock4_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -1018,7 +1018,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/390C#Donor", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#390C_Donor", "@type": "Donor", "label": "Female, Age 65", "description": "Entered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -1030,7 +1030,7 @@ "sex": "Female", "samples": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/390C#Donor_TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#390C_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -1078,7 +1078,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x/390C#Donor_TissueBlock1_TissueBlock1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#390C_Donor_TissueBlock1_TissueBlock1_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -1090,7 +1090,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor5_TissueBlock2", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor5_TissueBlock2", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -1138,7 +1138,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor5_TissueBlock2_TissueBlock2_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor5_TissueBlock2_TissueBlock2_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -1150,7 +1150,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor5_TissueBlock3", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor5_TissueBlock3", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -1198,7 +1198,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor5_TissueBlock3_TissueBlock3_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor5_TissueBlock3_TissueBlock3_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", @@ -1210,7 +1210,7 @@ ] }, { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor5_TissueBlock4", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor5_TissueBlock4", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", @@ -1258,7 +1258,7 @@ }, "datasets": [ { - "@id": "https://doi.org/10.1186/s13059-019-1906-x#Donor5_TissueBlock4_TissueBlock4_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/4d74781b-8186-4c9a-b659-ff4dc4601d91#Donor5_TissueBlock4_TissueBlock4_Dataset1", "@type": "Dataset", "label": "Registered 7/7/2023, Kerstin Meyer, Wellcome Sanger Institute", "description": "Data/Assay Types: OTHER, ", diff --git a/htan-intestine-sorger-2023/registrations.yaml b/htan-intestine-sorger-2023/registrations.yaml index e8c45d8..b869698 100644 --- a/htan-intestine-sorger-2023/registrations.yaml +++ b/htan-intestine-sorger-2023/registrations.yaml @@ -7,7 +7,7 @@ id: https://doi.org/10.1016/j.cell.2022.12.028 # thumbnail: assets/logo.jpg # does not exist yet link: https://doi.org/10.1016/j.cell.2022.12.028 - publication: https://doi.org/10.1016/j.cell.2022.12.028 + publication: https://doi.org/10.1016/j.cell.2022.12.028 donors: - sex: Male age: 69 diff --git a/nhlbi-lung-wang-2020/registrations.yaml b/nhlbi-lung-wang-2020/registrations.yaml index a7b1271..8f5047e 100644 --- a/nhlbi-lung-wang-2020/registrations.yaml +++ b/nhlbi-lung-wang-2020/registrations.yaml @@ -4,57 +4,64 @@ provider_name: NHLBI/LungMap provider_uuid: 0ec3cf4a-4a28-496a-b66e-df34f4cd32e1 defaults: - id: http://purl.org/ccf/1.5/NHLBI + id: https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837 thumbnail: assets/logo.jpg link: https://data-browser.lungmap.net/explore/projects/20037472-ea1d-4ddb-9cd3-56a11a6f0f76 publication: https://doi.org/10.7554/eLife.62522 donors: - sex: Male #D032 age: 3 - id: http://purl.org/ccf/1.5/NHLBI/D032#Donor + id: https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D032_Donor samples: - rui_location: male.json datasets: - - technology: OTHER + - id: https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D032$lung + technology: OTHER - sex: Male #D046 age: 3 - id: http://purl.org/ccf/1.5/NHLBI/D046#Donor + id: https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D046_Donor samples: - rui_location: male.json datasets: - - technology: OTHER + - id: https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D046$lung + technology: OTHER - sex: Female #D139 age: 3 - id: http://purl.org/ccf/1.5/NHLBI/D139#Donor + id: https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D139_Donor samples: - rui_location: female.json datasets: - - technology: OTHER + - id: https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D139$lung + technology: OTHER - sex: Male #D122 age: 31 - id: http://purl.org/ccf/1.5/NHLBI/D122#Donor + id: https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D122_Donor samples: - rui_location: male.json datasets: - - technology: OTHER + - id: https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D122$lung + technology: OTHER - sex: Male #D175 age: 29 - id: http://purl.org/ccf/1.5/NHLBI/D175#Donor + id: https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D175_Donor samples: - rui_location: male.json datasets: - - technology: OTHER + - id: https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D175$lung + technology: OTHER - sex: Female #D231 age: 33 - id: http://purl.org/ccf/1.5/NHLBI/D231#Donor + id: https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D231_Donor samples: - rui_location: female.json datasets: - - technology: OTHER + - id: https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D231$lung + technology: OTHER - sex: Male #D110 age: 0 - id: http://purl.org/ccf/1.5/NHLBI/D110#Donor + id: https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D110_Donor samples: - rui_location: male.json datasets: - - technology: OTHER \ No newline at end of file + - id: https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D110$lung + technology: OTHER \ No newline at end of file diff --git a/nhlbi-lung-wang-2020/rui_locations.jsonld b/nhlbi-lung-wang-2020/rui_locations.jsonld index 43d7193..b6992bc 100644 --- a/nhlbi-lung-wang-2020/rui_locations.jsonld +++ b/nhlbi-lung-wang-2020/rui_locations.jsonld @@ -2,7 +2,7 @@ "@context": "https://hubmapconsortium.github.io/ccf-ontology/ccf-context.jsonld", "@graph": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D032#Donor", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D032_Donor", "@type": "Donor", "label": "Male, Age 3", "description": "Entered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -14,7 +14,7 @@ "sex": "Male", "samples": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D032#Donor_TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D032_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -64,7 +64,7 @@ }, "datasets": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D032#Donor_TissueBlock1_TissueBlock1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D032$lung", "@type": "Dataset", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", "description": "Data/Assay Types: OTHER, ", @@ -78,7 +78,7 @@ ] }, { - "@id": "http://purl.org/ccf/1.5/NHLBI/D046#Donor", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D046_Donor", "@type": "Donor", "label": "Male, Age 3", "description": "Entered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -90,7 +90,7 @@ "sex": "Male", "samples": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D046#Donor_TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D046_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -140,7 +140,7 @@ }, "datasets": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D046#Donor_TissueBlock1_TissueBlock1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D046$lung", "@type": "Dataset", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", "description": "Data/Assay Types: OTHER, ", @@ -154,7 +154,7 @@ ] }, { - "@id": "http://purl.org/ccf/1.5/NHLBI/D139#Donor", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D139_Donor", "@type": "Donor", "label": "Female, Age 3", "description": "Entered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -166,7 +166,7 @@ "sex": "Female", "samples": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D139#Donor_TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D139_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -215,7 +215,7 @@ }, "datasets": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D139#Donor_TissueBlock1_TissueBlock1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D139$lung", "@type": "Dataset", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", "description": "Data/Assay Types: OTHER, ", @@ -229,7 +229,7 @@ ] }, { - "@id": "http://purl.org/ccf/1.5/NHLBI/D122#Donor", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D122_Donor", "@type": "Donor", "label": "Male, Age 31", "description": "Entered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -241,7 +241,7 @@ "sex": "Male", "samples": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D122#Donor_TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D122_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -291,7 +291,7 @@ }, "datasets": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D122#Donor_TissueBlock1_TissueBlock1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D122$lung", "@type": "Dataset", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", "description": "Data/Assay Types: OTHER, ", @@ -305,7 +305,7 @@ ] }, { - "@id": "http://purl.org/ccf/1.5/NHLBI/D175#Donor", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D175_Donor", "@type": "Donor", "label": "Male, Age 29", "description": "Entered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -317,7 +317,7 @@ "sex": "Male", "samples": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D175#Donor_TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D175_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -367,7 +367,7 @@ }, "datasets": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D175#Donor_TissueBlock1_TissueBlock1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D175$lung", "@type": "Dataset", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", "description": "Data/Assay Types: OTHER, ", @@ -381,7 +381,7 @@ ] }, { - "@id": "http://purl.org/ccf/1.5/NHLBI/D231#Donor", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D231_Donor", "@type": "Donor", "label": "Female, Age 33", "description": "Entered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -393,7 +393,7 @@ "sex": "Female", "samples": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D231#Donor_TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D231_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -442,7 +442,7 @@ }, "datasets": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D231#Donor_TissueBlock1_TissueBlock1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D231$lung", "@type": "Dataset", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", "description": "Data/Assay Types: OTHER, ", @@ -456,7 +456,7 @@ ] }, { - "@id": "http://purl.org/ccf/1.5/NHLBI/D110#Donor", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D110_Donor", "@type": "Donor", "label": "Male", "description": "Entered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -468,7 +468,7 @@ "sex": "Male", "samples": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D110#Donor_TissueBlock1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D110_Donor_TissueBlock1", "@type": "Sample", "sample_type": "Tissue Block", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", @@ -518,7 +518,7 @@ }, "datasets": [ { - "@id": "http://purl.org/ccf/1.5/NHLBI/D110#Donor_TissueBlock1_TissueBlock1_Dataset1", + "@id": "https://api.cellxgene.cziscience.com/dp/v1/collections/625f6bf4-2f33-4942-962e-35243d284837#D110$lung", "@type": "Dataset", "label": "Registered 3/24/2023, Allen Wang, NHLBI/LungMap", "description": "Data/Assay Types: OTHER, ",