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I was wondering how prodigal is assigning the strand orientation?
If I look into the corresponding genomes from which the gene catalogue was generated, the strand orientation is "-" and not "+".
So, should I update the output GFF file with the original strand information or which algorithm is prodigal using to infer this?
Thanks!
The text was updated successfully, but these errors were encountered:
Hi,
I am running prodigal meta on a gene catalogue in FASTA format to get the GFF and GTF file.
The faster headers look like this:
The final GFF file after completion looks like this:
I was wondering how prodigal is assigning the strand orientation?
If I look into the corresponding genomes from which the gene catalogue was generated, the strand orientation is "-" and not "+".
So, should I update the output GFF file with the original strand information or which algorithm is prodigal using to infer this?
Thanks!
The text was updated successfully, but these errors were encountered: