Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Cannot start R when run VisR #7

Open
Abby-Michigan opened this issue Feb 11, 2020 · 0 comments
Open

Cannot start R when run VisR #7

Abby-Michigan opened this issue Feb 11, 2020 · 0 comments

Comments

@Abby-Michigan
Copy link

Run VisR as adiministrator and got the log as following:

F:\Single cell seq analysis tool\VisR.0.9.42\VisR.0.9.42>java -jar VisR.jar
Checking for updates
Response Code : 200
Up to date.
Fetching user directory... INFO [2020-02-10 22:33:32,519] [DirectoryManager.java:139] [main] Application Directory: C:\Users\Lin\VisR
java.awt.Dimension[width=300,height=650]
java.awt.Dimension[width=145,height=40]
java.awt.Dimension[width=350,height=325]
C:\Program Files (x86)\Common Files\Oracle\Java\javapath;C:\WINDOWS\Sun\Java\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\Program Files (x86)\Common Files\Oracle\Java\javapath;C:\Rtools\bin;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0;C:\Program Files (x86)\NVIDIA Corporation\PhysX\Common;C:\Program Files\Intel\WiFi\bin;C:\Program Files\Common Files\Intel\WirelessCommon;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\System32\WindowsPowerShell\v1.0;C:\WINDOWS\System32\OpenSSH;C:\Program Files\ITK-SNAP 3.8\bin;C:\Users\Lin\AppData\Local\Microsoft\WindowsApps;.
INFO [2020-02-10 22:33:35,140] [StartRserve.java:335] [main] First connect try failed with: Cannot connect: Connection refused: connect
INFO [2020-02-10 22:33:35,141] [StartRserve.java:185] [main] Windows: query registry to find where R is installed ...
INFO [2020-02-10 22:33:35,142] [StartRserve.java:189] [main] reg query HKLM\Software\R-core\R
INFO [2020-02-10 22:33:35,206] [StartRserve.java:58] [Thread-3] R InstallPath = C:\Program Files\R\R-3.6.1
INFO [2020-02-10 22:33:35,213] [StartRserve.java:116] [main] waiting for Rserve to start ... (java.lang.ProcessImpl@3514a4c0)
INFO [2020-02-10 22:33:35,214] [StartRserve.java:146] [main] let us try to connect ...
INFO [2020-02-10 22:33:35,440] [StartRserve.java:61] [Thread-5] Rserve> _
INFO [2020-02-10 22:33:35,441] [StartRserve.java:61] [Thread-5] Rserve> platform x86_64-w64-mingw32
INFO [2020-02-10 22:33:35,441] [StartRserve.java:61] [Thread-5] Rserve> arch x86_64
INFO [2020-02-10 22:33:35,441] [StartRserve.java:61] [Thread-5] Rserve> os mingw32
INFO [2020-02-10 22:33:35,442] [StartRserve.java:61] [Thread-5] Rserve> system x86_64, mingw32
INFO [2020-02-10 22:33:35,442] [StartRserve.java:61] [Thread-5] Rserve> status
INFO [2020-02-10 22:33:35,442] [StartRserve.java:61] [Thread-5] Rserve> major 3
INFO [2020-02-10 22:33:35,442] [StartRserve.java:61] [Thread-5] Rserve> minor 6.1
INFO [2020-02-10 22:33:35,443] [StartRserve.java:61] [Thread-5] Rserve> year 2019
INFO [2020-02-10 22:33:35,443] [StartRserve.java:61] [Thread-5] Rserve> month 07
INFO [2020-02-10 22:33:35,443] [StartRserve.java:61] [Thread-5] Rserve> day 05
INFO [2020-02-10 22:33:35,443] [StartRserve.java:61] [Thread-5] Rserve> svn rev 76782
INFO [2020-02-10 22:33:35,444] [StartRserve.java:61] [Thread-5] Rserve> language R
INFO [2020-02-10 22:33:35,444] [StartRserve.java:61] [Thread-5] Rserve> version.string R version 3.6.1 (2019-07-05)
INFO [2020-02-10 22:33:35,444] [StartRserve.java:61] [Thread-5] Rserve> nickname Action of the Toes
INFO [2020-02-10 22:33:35,444] [StartRserve.java:61] [Thread-5] Rserve> [1] "getwd(): F:/Single cell seq analysis tool/VisR.0.9.42/VisR.0.9.42"
INFO [2020-02-10 22:33:35,464] [StartRserve.java:61] [Thread-4] Rserve> Error in loadNamespace(name) : 不存在叫'assertthat'这个名字的程辑包
INFO [2020-02-10 22:33:35,465] [StartRserve.java:61] [Thread-4] Rserve> Calls: source ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
INFO [2020-02-10 22:33:35,465] [StartRserve.java:61] [Thread-4] Rserve> 停止执行
INFO [2020-02-10 22:33:37,218] [StartRserve.java:159] [main] Try failed with: Cannot connect: Connection refused: connect
INFO [2020-02-10 22:33:39,722] [StartRserve.java:159] [main] Try failed with: Cannot connect: Connection refused: connect
INFO [2020-02-10 22:33:42,227] [StartRserve.java:159] [main] Try failed with: Cannot connect: Connection refused: connect
INFO [2020-02-10 22:33:44,731] [StartRserve.java:159] [main] Try failed with: Cannot connect: Connection refused: connect
INFO [2020-02-10 22:33:47,235] [StartRserve.java:159] [main] Try failed with: Cannot connect: Connection refused: connect
Cannot load R.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant