diff --git a/.buildinfo b/.buildinfo
index 71e090084..5342c429f 100644
--- a/.buildinfo
+++ b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: b7a880a53a6a0d927ae7863fcae7c38b
+config: c2e7fe0ae63614827e3435933dbd1a08
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip b/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip
index 86f7b7d8a..351e54669 100644
Binary files a/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip and b/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip differ
diff --git a/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip b/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip
index 4857bb100..855e7b360 100644
Binary files a/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip and b/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip differ
diff --git a/_images/sphx_glr_simple_arctan_fit_001.png b/_images/sphx_glr_simple_arctan_fit_001.png
index bc09c2c7d..d89da08e6 100644
Binary files a/_images/sphx_glr_simple_arctan_fit_001.png and b/_images/sphx_glr_simple_arctan_fit_001.png differ
diff --git a/_images/sphx_glr_simple_arctan_fit_thumb.png b/_images/sphx_glr_simple_arctan_fit_thumb.png
index bda01bf88..ab425ad53 100644
Binary files a/_images/sphx_glr_simple_arctan_fit_thumb.png and b/_images/sphx_glr_simple_arctan_fit_thumb.png differ
diff --git a/_sources/auto_examples/model_fitting/EELS_curve_fitting.rst.txt b/_sources/auto_examples/model_fitting/EELS_curve_fitting.rst.txt
index 245a1b975..ee707833e 100644
--- a/_sources/auto_examples/model_fitting/EELS_curve_fitting.rst.txt
+++ b/_sources/auto_examples/model_fitting/EELS_curve_fitting.rst.txt
@@ -38,7 +38,7 @@ png file.
 
  .. code-block:: none
 
-
      0%|                                              | 0.00/42.3M [00:00<?, ?B/s]
      0%|                                      | 12.3k/42.3M [00:00<06:22, 111kB/s]
      0%|                                      | 39.9k/42.3M [00:00<03:41, 191kB/s]
      0%|                                      | 86.0k/42.3M [00:00<02:24, 291kB/s]
      0%|                                       | 118k/42.3M [00:00<02:26, 288kB/s]
      1%|▏                                      | 215k/42.3M [00:00<01:24, 497kB/s]
      1%|▍                                     | 441k/42.3M [00:00<00:41, 1.01MB/s]
      2%|▊                                     | 899k/42.3M [00:00<00:20, 2.02MB/s]
      4%|█▌                                   | 1.82M/42.3M [00:00<00:10, 3.98MB/s]
      9%|███▏                                 | 3.66M/42.3M [00:01<00:04, 7.86MB/s]
     14%|█████▏                               | 5.97M/42.3M [00:01<00:03, 11.8MB/s]
     19%|██████▉                              | 7.98M/42.3M [00:01<00:02, 13.7MB/s]
     24%|█████████                            | 10.3M/42.3M [00:01<00:02, 15.9MB/s]
     29%|██████████▉                          | 12.5M/42.3M [00:01<00:01, 16.8MB/s]
     35%|████████████▉                        | 14.7M/42.3M [00:01<00:01, 17.8MB/s]
     40%|██████████████▊                      | 16.9M/42.3M [00:01<00:01, 18.3MB/s]
     45%|████████████████▊                    | 19.1M/42.3M [00:01<00:01, 18.8MB/s]
     50%|██████████████████▋                  | 21.3M/42.3M [00:01<00:01, 19.0MB/s]
     56%|████████████████████▋                | 23.6M/42.3M [00:02<00:00, 19.4MB/s]
     61%|██████████████████████▋              | 25.9M/42.3M [00:02<00:00, 19.6MB/s]
     67%|████████████████████████▌            | 28.1M/42.3M [00:02<00:00, 19.8MB/s]
     72%|██████████████████████████▌          | 30.4M/42.3M [00:02<00:00, 19.8MB/s]
     77%|████████████████████████████▌        | 32.7M/42.3M [00:02<00:00, 20.0MB/s]
     83%|██████████████████████████████▌      | 34.9M/42.3M [00:02<00:00, 19.9MB/s]
     88%|████████████████████████████████▌    | 37.2M/42.3M [00:02<00:00, 20.0MB/s]
     93%|██████████████████████████████████▍  | 39.4M/42.3M [00:02<00:00, 19.9MB/s]
     98%|████████████████████████████████████▍| 41.6M/42.3M [00:02<00:00, 20.0MB/s]
      0%|                                              | 0.00/42.3M [00:00<?, ?B/s]
    100%|██████████████████████████████████████| 42.3M/42.3M [00:00<00:00, 277GB/s]
+
      0%|                                              | 0.00/42.3M [00:00<?, ?B/s]
      0%|                                      | 12.3k/42.3M [00:00<06:26, 109kB/s]
      0%|                                      | 44.0k/42.3M [00:00<03:20, 211kB/s]
      0%|                                      | 90.1k/42.3M [00:00<02:20, 301kB/s]
      0%|▏                                      | 203k/42.3M [00:00<01:13, 575kB/s]
      1%|▎                                     | 414k/42.3M [00:00<00:40, 1.04MB/s]
      2%|▊                                     | 855k/42.3M [00:00<00:20, 2.01MB/s]
      4%|█▌                                   | 1.76M/42.3M [00:00<00:10, 3.96MB/s]
      8%|███                                  | 3.54M/42.3M [00:00<00:05, 7.71MB/s]
     14%|█████                                | 5.78M/42.3M [00:01<00:03, 11.5MB/s]
     19%|██████▉                              | 7.86M/42.3M [00:01<00:02, 13.6MB/s]
     24%|████████▊                            | 10.1M/42.3M [00:01<00:02, 15.4MB/s]
     29%|██████████▋                          | 12.2M/42.3M [00:01<00:01, 16.5MB/s]
     34%|████████████▋                        | 14.4M/42.3M [00:01<00:01, 17.4MB/s]
     39%|██████████████▌                      | 16.6M/42.3M [00:01<00:01, 17.9MB/s]
     44%|████████████████▍                    | 18.8M/42.3M [00:01<00:01, 18.4MB/s]
     50%|██████████████████▎                  | 20.9M/42.3M [00:01<00:01, 18.6MB/s]
     55%|████████████████████▎                | 23.2M/42.3M [00:01<00:01, 18.9MB/s]
     60%|██████████████████████▏              | 25.3M/42.3M [00:02<00:00, 19.0MB/s]
     65%|████████████████████████             | 27.5M/42.3M [00:02<00:00, 19.1MB/s]
     70%|██████████████████████████           | 29.8M/42.3M [00:02<00:00, 19.3MB/s]
     76%|███████████████████████████▉         | 32.0M/42.3M [00:02<00:00, 19.3MB/s]
     81%|█████████████████████████████▉       | 34.2M/42.3M [00:02<00:00, 19.4MB/s]
     86%|███████████████████████████████▉     | 36.4M/42.3M [00:02<00:00, 19.5MB/s]
     91%|█████████████████████████████████▊   | 38.7M/42.3M [00:02<00:00, 19.6MB/s]
     97%|███████████████████████████████████▊ | 40.9M/42.3M [00:02<00:00, 19.7MB/s]
      0%|                                              | 0.00/42.3M [00:00<?, ?B/s]
    100%|██████████████████████████████████████| 42.3M/42.3M [00:00<00:00, 278GB/s]
 
 
 
@@ -68,7 +68,7 @@ png file.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 9.275 seconds)
+   **Total running time of the script:** (0 minutes 9.033 seconds)
 
 
 .. _sphx_glr_download_auto_examples_model_fitting_EELS_curve_fitting.py:
diff --git a/_sources/auto_examples/model_fitting/plot_residual.rst.txt b/_sources/auto_examples/model_fitting/plot_residual.rst.txt
index 14371adbe..4101f4e15 100644
--- a/_sources/auto_examples/model_fitting/plot_residual.rst.txt
+++ b/_sources/auto_examples/model_fitting/plot_residual.rst.txt
@@ -110,7 +110,7 @@ Fit for all navigation positions:
 
  .. code-block:: none
 
-    Exception ignored in: <function tqdm.__del__ at 0x7f9a6d302840>
+    Exception ignored in: <function tqdm.__del__ at 0x7f43efe82840>
     Traceback (most recent call last):
       File "/opt/hostedtoolcache/Python/3.11.8/x64/lib/python3.11/site-packages/tqdm/std.py", line 1148, in __del__
         self.close()
@@ -118,7 +118,7 @@ Fit for all navigation positions:
         self.disp(bar_style='danger', check_delay=False)
         ^^^^^^^^^
     AttributeError: 'tqdm_notebook' object has no attribute 'disp'
-
      0%|          | 0/10 [00:00<?, ?it/s]
    100%|██████████| 10/10 [00:00<00:00, 1441.54it/s]
+
      0%|          | 0/10 [00:00<?, ?it/s]
    100%|██████████| 10/10 [00:00<00:00, 1424.26it/s]
 
 
 
@@ -164,7 +164,7 @@ sphinx_gallery_thumbnail_number = 2
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 0.505 seconds)
+   **Total running time of the script:** (0 minutes 0.598 seconds)
 
 
 .. _sphx_glr_download_auto_examples_model_fitting_plot_residual.py:
diff --git a/_sources/auto_examples/model_fitting/sg_execution_times.rst.txt b/_sources/auto_examples/model_fitting/sg_execution_times.rst.txt
index c933b4378..ac0d7b69b 100644
--- a/_sources/auto_examples/model_fitting/sg_execution_times.rst.txt
+++ b/_sources/auto_examples/model_fitting/sg_execution_times.rst.txt
@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**00:10.141** total execution time for 3 files **from auto_examples/model_fitting**:
+**00:09.993** total execution time for 3 files **from auto_examples/model_fitting**:
 
 .. container::
 
@@ -33,10 +33,10 @@ Computation times
      - Time
      - Mem (MB)
    * - :ref:`sphx_glr_auto_examples_model_fitting_EELS_curve_fitting.py` (``EELS_curve_fitting.py``)
-     - 00:09.275
+     - 00:09.033
      - 0.0
    * - :ref:`sphx_glr_auto_examples_model_fitting_plot_residual.py` (``plot_residual.py``)
-     - 00:00.505
+     - 00:00.598
      - 0.0
    * - :ref:`sphx_glr_auto_examples_model_fitting_simple_arctan_fit.py` (``simple_arctan_fit.py``)
      - 00:00.362
diff --git a/_sources/auto_examples/model_fitting/simple_arctan_fit.rst.txt b/_sources/auto_examples/model_fitting/simple_arctan_fit.rst.txt
index 6d794b0df..3ea4b6239 100644
--- a/_sources/auto_examples/model_fitting/simple_arctan_fit.rst.txt
+++ b/_sources/auto_examples/model_fitting/simple_arctan_fit.rst.txt
@@ -42,9 +42,9 @@ Fit an arctan function.
     Active: True
     Parameter Name |    Free |      Value |        Std |        Min |        Max | Linear
     ============== | ======= | ========== | ========== | ========== | ========== | ======
-                 A |    True | 0.99768626 | 0.00216762 |       None |       None |   True
-                 k |    True | 0.87503084 | 0.07023353 |       None |       None |  False
-                x0 |    True | 0.02853840 | 0.08660922 |       None |       None |  False
+                 A |    True | 1.00157171 | 0.00212899 |       None |       None |   True
+                 k |    True | 1.01792870 | 0.08682222 |       None |       None |  False
+                x0 |    True | 0.03878109 | 0.07831814 |       None |       None |  False
 
 
 
diff --git a/_sources/sg_execution_times.rst.txt b/_sources/sg_execution_times.rst.txt
index a1ecb7a20..220090236 100644
--- a/_sources/sg_execution_times.rst.txt
+++ b/_sources/sg_execution_times.rst.txt
@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**00:10.141** total execution time for 3 files **from all galleries**:
+**00:09.993** total execution time for 3 files **from all galleries**:
 
 .. container::
 
@@ -33,10 +33,10 @@ Computation times
      - Time
      - Mem (MB)
    * - :ref:`sphx_glr_auto_examples_model_fitting_EELS_curve_fitting.py` (``../examples/model_fitting/EELS_curve_fitting.py``)
-     - 00:09.275
+     - 00:09.033
      - 0.0
    * - :ref:`sphx_glr_auto_examples_model_fitting_plot_residual.py` (``../examples/model_fitting/plot_residual.py``)
-     - 00:00.505
+     - 00:00.598
      - 0.0
    * - :ref:`sphx_glr_auto_examples_model_fitting_simple_arctan_fit.py` (``../examples/model_fitting/simple_arctan_fit.py``)
      - 00:00.362
diff --git a/auto_examples/model_fitting/EELS_curve_fitting.html b/auto_examples/model_fitting/EELS_curve_fitting.html
index a05798fdb..4aa4b4472 100644
--- a/auto_examples/model_fitting/EELS_curve_fitting.html
+++ b/auto_examples/model_fitting/EELS_curve_fitting.html
@@ -471,34 +471,33 @@
 <p>Performs curve fitting to an EELS spectrum, plots the result and saves it as
 png file.</p>
 <img src="../../_images/sphx_glr_EELS_curve_fitting_001.png" srcset="../../_images/sphx_glr_EELS_curve_fitting_001.png" alt="coreloss_spectrum Signal" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>  0%|                                              | 0.00/42.3M [00:00&lt;?, ?B/s]
-  0%|                                      | 12.3k/42.3M [00:00&lt;06:22, 111kB/s]
-  0%|                                      | 39.9k/42.3M [00:00&lt;03:41, 191kB/s]
-  0%|                                      | 86.0k/42.3M [00:00&lt;02:24, 291kB/s]
-  0%|                                       | 118k/42.3M [00:00&lt;02:26, 288kB/s]
-  1%|▏                                      | 215k/42.3M [00:00&lt;01:24, 497kB/s]
-  1%|▍                                     | 441k/42.3M [00:00&lt;00:41, 1.01MB/s]
-  2%|▊                                     | 899k/42.3M [00:00&lt;00:20, 2.02MB/s]
-  4%|█▌                                   | 1.82M/42.3M [00:00&lt;00:10, 3.98MB/s]
-  9%|███▏                                 | 3.66M/42.3M [00:01&lt;00:04, 7.86MB/s]
- 14%|█████▏                               | 5.97M/42.3M [00:01&lt;00:03, 11.8MB/s]
- 19%|██████▉                              | 7.98M/42.3M [00:01&lt;00:02, 13.7MB/s]
- 24%|█████████                            | 10.3M/42.3M [00:01&lt;00:02, 15.9MB/s]
- 29%|██████████▉                          | 12.5M/42.3M [00:01&lt;00:01, 16.8MB/s]
- 35%|████████████▉                        | 14.7M/42.3M [00:01&lt;00:01, 17.8MB/s]
- 40%|██████████████▊                      | 16.9M/42.3M [00:01&lt;00:01, 18.3MB/s]
- 45%|████████████████▊                    | 19.1M/42.3M [00:01&lt;00:01, 18.8MB/s]
- 50%|██████████████████▋                  | 21.3M/42.3M [00:01&lt;00:01, 19.0MB/s]
- 56%|████████████████████▋                | 23.6M/42.3M [00:02&lt;00:00, 19.4MB/s]
- 61%|██████████████████████▋              | 25.9M/42.3M [00:02&lt;00:00, 19.6MB/s]
- 67%|████████████████████████▌            | 28.1M/42.3M [00:02&lt;00:00, 19.8MB/s]
- 72%|██████████████████████████▌          | 30.4M/42.3M [00:02&lt;00:00, 19.8MB/s]
- 77%|████████████████████████████▌        | 32.7M/42.3M [00:02&lt;00:00, 20.0MB/s]
- 83%|██████████████████████████████▌      | 34.9M/42.3M [00:02&lt;00:00, 19.9MB/s]
- 88%|████████████████████████████████▌    | 37.2M/42.3M [00:02&lt;00:00, 20.0MB/s]
- 93%|██████████████████████████████████▍  | 39.4M/42.3M [00:02&lt;00:00, 19.9MB/s]
- 98%|████████████████████████████████████▍| 41.6M/42.3M [00:02&lt;00:00, 20.0MB/s]
+  0%|                                      | 12.3k/42.3M [00:00&lt;06:26, 109kB/s]
+  0%|                                      | 44.0k/42.3M [00:00&lt;03:20, 211kB/s]
+  0%|                                      | 90.1k/42.3M [00:00&lt;02:20, 301kB/s]
+  0%|▏                                      | 203k/42.3M [00:00&lt;01:13, 575kB/s]
+  1%|▎                                     | 414k/42.3M [00:00&lt;00:40, 1.04MB/s]
+  2%|▊                                     | 855k/42.3M [00:00&lt;00:20, 2.01MB/s]
+  4%|█▌                                   | 1.76M/42.3M [00:00&lt;00:10, 3.96MB/s]
+  8%|███                                  | 3.54M/42.3M [00:00&lt;00:05, 7.71MB/s]
+ 14%|█████                                | 5.78M/42.3M [00:01&lt;00:03, 11.5MB/s]
+ 19%|██████▉                              | 7.86M/42.3M [00:01&lt;00:02, 13.6MB/s]
+ 24%|████████▊                            | 10.1M/42.3M [00:01&lt;00:02, 15.4MB/s]
+ 29%|██████████▋                          | 12.2M/42.3M [00:01&lt;00:01, 16.5MB/s]
+ 34%|████████████▋                        | 14.4M/42.3M [00:01&lt;00:01, 17.4MB/s]
+ 39%|██████████████▌                      | 16.6M/42.3M [00:01&lt;00:01, 17.9MB/s]
+ 44%|████████████████▍                    | 18.8M/42.3M [00:01&lt;00:01, 18.4MB/s]
+ 50%|██████████████████▎                  | 20.9M/42.3M [00:01&lt;00:01, 18.6MB/s]
+ 55%|████████████████████▎                | 23.2M/42.3M [00:01&lt;00:01, 18.9MB/s]
+ 60%|██████████████████████▏              | 25.3M/42.3M [00:02&lt;00:00, 19.0MB/s]
+ 65%|████████████████████████             | 27.5M/42.3M [00:02&lt;00:00, 19.1MB/s]
+ 70%|██████████████████████████           | 29.8M/42.3M [00:02&lt;00:00, 19.3MB/s]
+ 76%|███████████████████████████▉         | 32.0M/42.3M [00:02&lt;00:00, 19.3MB/s]
+ 81%|█████████████████████████████▉       | 34.2M/42.3M [00:02&lt;00:00, 19.4MB/s]
+ 86%|███████████████████████████████▉     | 36.4M/42.3M [00:02&lt;00:00, 19.5MB/s]
+ 91%|█████████████████████████████████▊   | 38.7M/42.3M [00:02&lt;00:00, 19.6MB/s]
+ 97%|███████████████████████████████████▊ | 40.9M/42.3M [00:02&lt;00:00, 19.7MB/s]
   0%|                                              | 0.00/42.3M [00:00&lt;?, ?B/s]
-100%|██████████████████████████████████████| 42.3M/42.3M [00:00&lt;00:00, 277GB/s]
+100%|██████████████████████████████████████| 42.3M/42.3M [00:00&lt;00:00, 278GB/s]
 </pre></div>
 </div>
 <div class="line-block">
@@ -520,7 +519,7 @@
 <a href="https://hyperspy.org/hyperspy-doc/dev/reference/base_classes/model/model1d.html#hyperspy.models.model1d.Model1D.plot" title="hyperspy.models.model1d.Model1D.plot" class="sphx-glr-backref-module-hyperspy-models-model1d sphx-glr-backref-type-py-method"><span class="n">m</span><span class="o">.</span><span class="n">plot</span></a><span class="p">()</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 9.275 seconds)</p>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 9.033 seconds)</p>
 <div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-model-fitting-eels-curve-fitting-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/037b5aa4752b41748abf69bba9d1cbe4/EELS_curve_fitting.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">EELS_curve_fitting.ipynb</span></code></a></p>
diff --git a/auto_examples/model_fitting/plot_residual.html b/auto_examples/model_fitting/plot_residual.html
index d518c8d95..1415a313c 100644
--- a/auto_examples/model_fitting/plot_residual.html
+++ b/auto_examples/model_fitting/plot_residual.html
@@ -492,7 +492,7 @@
 <div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><a href="https://hyperspy.org/hyperspy-doc/dev/reference/base_classes/model/basemodel.html#hyperspy.model.BaseModel.multifit" title="hyperspy.model.BaseModel.multifit" class="sphx-glr-backref-module-hyperspy-model sphx-glr-backref-type-py-method"><span class="n">m</span><span class="o">.</span><span class="n">multifit</span></a><span class="p">()</span>
 </pre></div>
 </div>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Exception ignored in: &lt;function tqdm.__del__ at 0x7f9a6d302840&gt;
+<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Exception ignored in: &lt;function tqdm.__del__ at 0x7f43efe82840&gt;
 Traceback (most recent call last):
   File &quot;/opt/hostedtoolcache/Python/3.11.8/x64/lib/python3.11/site-packages/tqdm/std.py&quot;, line 1148, in __del__
     self.close()
@@ -502,7 +502,7 @@
 AttributeError: &#39;tqdm_notebook&#39; object has no attribute &#39;disp&#39;
 
   0%|          | 0/10 [00:00&lt;?, ?it/s]
-100%|██████████| 10/10 [00:00&lt;00:00, 1441.54it/s]
+100%|██████████| 10/10 [00:00&lt;00:00, 1424.26it/s]
 </pre></div>
 </div>
 <p>Plot the fitted model with residual:</p>
@@ -514,7 +514,7 @@
 <li><img src="../../_images/sphx_glr_plot_residual_002.png" srcset="../../_images/sphx_glr_plot_residual_002.png" alt="Signal" class = "sphx-glr-multi-img"/></li>
 </ul>
 <p>sphinx_gallery_thumbnail_number = 2</p>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.505 seconds)</p>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.598 seconds)</p>
 <div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-model-fitting-plot-residual-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/971c2906ad663020c2e6701928a24c9a/plot_residual.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_residual.ipynb</span></code></a></p>
diff --git a/auto_examples/model_fitting/sg_execution_times.html b/auto_examples/model_fitting/sg_execution_times.html
index cad150a44..ec420948f 100644
--- a/auto_examples/model_fitting/sg_execution_times.html
+++ b/auto_examples/model_fitting/sg_execution_times.html
@@ -440,7 +440,7 @@
                   
   <section id="computation-times">
 <span id="sphx-glr-auto-examples-model-fitting-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Link to this heading">#</a></h1>
-<p><strong>00:10.141</strong> total execution time for 3 files <strong>from auto_examples/model_fitting</strong>:</p>
+<p><strong>00:09.993</strong> total execution time for 3 files <strong>from auto_examples/model_fitting</strong>:</p>
 <div class="docutils container">
 <style scoped>
 <link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
@@ -462,11 +462,11 @@
 </thead>
 <tbody>
 <tr class="row-even"><td><p><a class="reference internal" href="EELS_curve_fitting.html#sphx-glr-auto-examples-model-fitting-eels-curve-fitting-py"><span class="std std-ref">EELS curve fitting</span></a> (<code class="docutils literal notranslate"><span class="pre">EELS_curve_fitting.py</span></code>)</p></td>
-<td><p>00:09.275</p></td>
+<td><p>00:09.033</p></td>
 <td><p>0.0</p></td>
 </tr>
 <tr class="row-odd"><td><p><a class="reference internal" href="plot_residual.html#sphx-glr-auto-examples-model-fitting-plot-residual-py"><span class="std std-ref">Plot Residual</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_residual.py</span></code>)</p></td>
-<td><p>00:00.505</p></td>
+<td><p>00:00.598</p></td>
 <td><p>0.0</p></td>
 </tr>
 <tr class="row-even"><td><p><a class="reference internal" href="simple_arctan_fit.html#sphx-glr-auto-examples-model-fitting-simple-arctan-fit-py"><span class="std std-ref">Simple arctan fit</span></a> (<code class="docutils literal notranslate"><span class="pre">simple_arctan_fit.py</span></code>)</p></td>
diff --git a/auto_examples/model_fitting/simple_arctan_fit.html b/auto_examples/model_fitting/simple_arctan_fit.html
index dada4e472..e8ab5da91 100644
--- a/auto_examples/model_fitting/simple_arctan_fit.html
+++ b/auto_examples/model_fitting/simple_arctan_fit.html
@@ -474,9 +474,9 @@
 Active: True
 Parameter Name |    Free |      Value |        Std |        Min |        Max | Linear
 ============== | ======= | ========== | ========== | ========== | ========== | ======
-             A |    True | 0.99768626 | 0.00216762 |       None |       None |   True
-             k |    True | 0.87503084 | 0.07023353 |       None |       None |  False
-            x0 |    True | 0.02853840 | 0.08660922 |       None |       None |  False
+             A |    True | 1.00157171 | 0.00212899 |       None |       None |   True
+             k |    True | 1.01792870 | 0.08682222 |       None |       None |  False
+            x0 |    True | 0.03878109 | 0.07831814 |       None |       None |  False
 </pre></div>
 </div>
 <div class="line-block">
diff --git a/searchindex.js b/searchindex.js
index 898d7491b..e88ac250b 100644
--- a/searchindex.js
+++ b/searchindex.js
@@ -1 +1 @@
-Search.setIndex({"docnames": ["auto_examples/index", "auto_examples/model_fitting/EELS_curve_fitting", "auto_examples/model_fitting/index", "auto_examples/model_fitting/plot_residual", "auto_examples/model_fitting/sg_execution_times", "auto_examples/model_fitting/simple_arctan_fit", "auto_examples/sg_execution_times", "changes", "citing", "contributing", "index", "intro", "reference/components", "reference/data", "reference/index", "reference/material", "reference/models", "reference/signals", "sg_execution_times", "user_guide/bibliography", "user_guide/dielectric_function", "user_guide/eds", "user_guide/eels", "user_guide/index", "user_guide/install", "user_guide/metadata_structure"], "filenames": ["auto_examples/index.rst", "auto_examples/model_fitting/EELS_curve_fitting.rst", "auto_examples/model_fitting/index.rst", "auto_examples/model_fitting/plot_residual.rst", "auto_examples/model_fitting/sg_execution_times.rst", "auto_examples/model_fitting/simple_arctan_fit.rst", "auto_examples/sg_execution_times.rst", "changes.rst", "citing.rst", "contributing.rst", "index.rst", "intro.rst", "reference/components.rst", "reference/data.rst", "reference/index.rst", "reference/material.rst", "reference/models.rst", "reference/signals.rst", "sg_execution_times.rst", "user_guide/bibliography.rst", "user_guide/dielectric_function.rst", "user_guide/eds.rst", "user_guide/eels.rst", "user_guide/index.rst", "user_guide/install.rst", "user_guide/metadata_structure.rst"], "titles": ["Gallery of Examples", "EELS curve fitting", "Model fitting", "Plot Residual", "Computation times", "Simple arctan fit", "Computation times", "Changelog", "Citing eXSpy", "Contributing", "Welcome to the documentation of eXSpy!", "Welcome to the documentation of eXSpy!", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.components</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.data</span></code>", "Reference", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.material</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.models</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.signals</span></code>", "Computation times", "Bibliography", "Dielectric function tools", "Energy-Dispersive X-ray Spectrometry (EDS)", "Electron Energy Loss Spectroscopy", "User Guide", "Installation", "eXSpy Metadata Structure"], "terms": {"below": [0, 2, 8, 10, 11, 12, 17, 22, 24], "i": [0, 2, 7, 8, 9, 10, 11, 12, 13, 15, 16, 17, 20, 21, 22, 24, 25], "plot": [0, 1, 2, 4, 5, 13, 16, 17, 18, 22, 23], "residu": [0, 2, 4, 18], "eel": [0, 2, 4, 7, 10, 11, 12, 13, 16, 17, 18, 23], "curv": [0, 2, 4, 18, 23], "simpl": [0, 2, 4, 10, 11, 18], "arctan": [0, 2, 4, 12, 18], "download": [0, 1, 3, 5, 7, 13, 21, 22], "all": [0, 3, 9, 12, 13, 16, 17, 18, 21, 22, 24, 25], "python": [0, 1, 3, 5, 7, 9, 10, 11, 24], "sourc": [0, 1, 3, 5, 9, 10, 11, 21], "code": [0, 1, 3, 5, 7, 17, 21], "auto_examples_python": 0, "zip": [0, 21], "jupyt": [0, 1, 3, 5, 9, 10, 11, 17, 24], "notebook": [0, 1, 3, 5, 9, 10, 11, 17, 24], "auto_examples_jupyt": 0, "gener": [0, 1, 3, 5, 9, 10, 11, 13, 16, 17, 22, 23], "sphinx": [0, 1, 3, 5, 9], "go": [1, 3, 5, 7, 12, 16, 17, 22], "end": [1, 3, 5, 12, 17], "full": [1, 3, 5, 12, 17, 25], "exampl": [1, 2, 3, 4, 5, 6, 9, 10, 11, 12, 13, 15, 16, 17, 18, 21, 22], "perform": [1, 10, 11, 16, 17, 22], "an": [1, 3, 5, 8, 10, 11, 12, 13, 15, 16, 17, 22, 23, 24, 25], "spectrum": [1, 5, 12, 13, 16, 17, 20, 22, 23, 25], "result": [1, 5, 9, 13, 16, 17, 21, 22], "save": [1, 12, 16, 22], "png": 1, "file": [1, 3, 4, 6, 7, 16, 17, 18, 21, 22], "0": [1, 3, 4, 5, 6, 12, 16, 17, 18, 19, 20, 21, 22], "00": [1, 3, 4, 6, 17, 18], "42": [1, 21], "3m": 1, "b": [1, 3, 12, 17, 19, 21, 22, 25], "": [1, 3, 5, 12, 13, 15, 16, 17, 19, 20, 21, 22, 25], "12": [1, 15], "3k": 1, "06": 1, "22": [1, 7, 19], "111kb": 1, "39": 1, "9k": 1, "03": 1, "41": [1, 17, 21], "191kb": 1, "86": 1, "0k": 1, "02": 1, "24": 1, "291kb": 1, "118k": 1, "26": [1, 21], "288kb": 1, "1": [1, 5, 12, 13, 15, 16, 17, 19, 20, 21, 22], "215k": 1, "01": [1, 12, 16, 17, 19, 21], "497kb": 1, "441k": 1, "01mb": 1, "2": [1, 3, 12, 15, 16, 17, 20, 21, 22, 25], "899k": 1, "20": [1, 12, 17, 22], "02mb": 1, "4": [1, 7, 12, 13, 16, 17, 19, 21, 22], "82m": 1, "10": [1, 3, 4, 12, 13, 15, 16, 17, 18, 19, 21, 22], "3": [1, 3, 4, 7, 10, 11, 12, 13, 16, 17, 18, 19, 21, 22], "98mb": 1, "9": [1, 17, 21, 22], "66m": 1, "04": [1, 21], "7": [1, 7, 21, 22], "86mb": 1, "14": [1, 7], "5": [1, 12, 13, 17, 21, 22], "97m": 1, "11": [1, 3, 15], "8mb": 1, "19": [1, 12], "98m": 1, "13": [1, 7, 21], "7mb": 1, "15": [1, 12, 17, 19, 21], "9mb": 1, "29": 1, "5m": 1, "16": 1, "35": [1, 21], "7m": 1, "17": 1, "40": [1, 22], "9m": 1, "18": 1, "3mb": 1, "45": [1, 22], "1m": 1, "50": [1, 15, 21], "21": 1, "0mb": 1, "56": [1, 21], "23": 1, "6m": 1, "4mb": 1, "61": [1, 19], "25": 1, "6mb": 1, "67": 1, "28": 1, "72": 1, "30": [1, 17, 21, 22], "4m": 1, "77": 1, "32": [1, 12, 17], "83": 1, "34": 1, "88": [1, 15, 21], "37": [1, 17, 21], "2m": 1, "93": [1, 15], "98": 1, "100": [1, 3, 15, 16, 17, 21], "277gb": 1, "import": [1, 3, 5, 9, 13, 17, 21, 22], "hyperspi": [1, 3, 5, 7, 8, 9, 10, 11, 12, 17, 20, 21, 22, 24, 25], "api": [1, 3, 5, 7, 9, 10, 11, 17, 20, 21, 22], "h": [1, 3, 5, 12, 15, 16, 17, 21, 22], "load": [1, 13, 22, 23, 24], "coreloss_spectrum": 1, "msa": [1, 21], "signal_typ": [1, 21, 25], "ll": [1, 9, 16, 17, 21, 22], "lowloss_spectrum": 1, "add_el": [1, 16, 17, 21, 22], "mn": [1, 13, 17, 21, 25], "o": [1, 9, 17, 22], "set_microscope_paramet": [1, 12, 17, 21, 22], "beam_energi": [1, 17, 21, 22, 25], "300": [1, 22], "convergence_angl": [1, 17, 22, 25], "6": [1, 13, 15, 16, 17, 21, 22], "collection_angl": [1, 17, 22, 25], "m": [1, 3, 5, 16, 17, 19, 21, 22], "create_model": [1, 3, 5, 16, 17, 21, 22], "low_loss": [1, 13, 16, 17], "enable_fine_structur": [1, 16, 22], "multifit": [1, 3, 16, 22], "kind": [1, 16, 22], "smart": [1, 16, 22], "total": [1, 3, 4, 5, 6, 15, 17, 18], "run": [1, 3, 5, 17, 21, 24], "time": [1, 3, 5, 7, 16, 17, 21, 25], "script": [1, 3, 5], "minut": [1, 3, 5], "275": [1, 4, 18], "second": [1, 3, 5, 12, 17, 19, 21, 25], "eels_curve_fit": [1, 4, 18], "ipynb": [1, 3, 5], "py": [1, 3, 4, 5, 18], "galleri": [1, 2, 3, 5, 10, 11, 18], "fit": [3, 4, 7, 10, 11, 12, 16, 17, 18, 23], "affin": 3, "function": [3, 5, 7, 9, 10, 11, 12, 16, 17, 21, 22, 23], "numpi": [3, 5, 9, 12, 17, 21], "np": [3, 5, 12, 16, 17], "creat": [3, 5, 16, 17, 21], "signal": [3, 5, 12, 13, 14, 15, 16, 19, 21, 22, 23], "data": [3, 5, 8, 10, 11, 12, 14, 16, 17, 19, 23, 25], "arang": [3, 5, 12, 17], "1000": [3, 17], "dtype": [3, 17], "int64": 3, "reshap": [3, 12], "signal1d": [3, 5, 12, 16, 17, 21, 22], "add": [3, 5, 7, 13, 16, 17, 21, 22, 25], "nois": [3, 13, 17, 22], "add_poissonian_nois": [3, 17], "random_st": [3, 13], "model": [3, 5, 7, 12, 14, 17, 21, 25], "line": [3, 9, 12, 15, 16, 17, 22, 23, 25], "components1d": [3, 5, 7, 12, 16, 22], "express": [3, 12], "x": [3, 5, 7, 10, 11, 12, 13, 15, 16, 17, 19, 23, 25], "name": [3, 5, 10, 11, 12, 15, 16, 17, 21, 22], "append": [3, 5, 16], "navig": [3, 12, 13, 17, 21], "posit": [3, 12, 16, 17, 21, 22, 25], "except": [3, 16, 17, 21, 22], "ignor": [3, 16, 17], "tqdm": 3, "__del__": 3, "0x7f9a6d302840": 3, "traceback": [3, 9], "most": [3, 17, 21, 22], "recent": 3, "call": [3, 9, 16, 17, 21, 22], "last": [3, 17], "opt": 3, "hostedtoolcach": 3, "8": [3, 15, 17, 19, 21], "x64": 3, "lib": 3, "python3": 3, "site": 3, "packag": [3, 7, 9, 10, 11, 23], "std": [3, 5, 16, 17], "1148": 3, "self": [3, 16, 17], "close": [3, 12, 17], "279": 3, "disp": 3, "bar_styl": 3, "danger": 3, "check_delai": 3, "fals": [3, 5, 12, 13, 16, 17], "attributeerror": [3, 17], "tqdm_notebook": 3, "object": [3, 12, 16, 17, 21, 25], "ha": [3, 8, 10, 11, 16, 17, 22, 25], "attribut": [3, 12, 16, 17, 21, 22, 25], "1441": 3, "54it": 3, "plot_residu": [3, 4, 18], "true": [3, 5, 7, 12, 13, 16, 17, 21, 22], "sphinx_gallery_thumbnail_numb": 3, "505": [3, 4, 18], "141": [4, 18], "execut": [4, 6, 16, 18, 22], "from": [4, 6, 7, 12, 13, 15, 16, 17, 18, 19, 20, 22, 24, 25], "auto_exampl": [4, 6], "model_fit": [4, 18], "mem": [4, 6, 18], "mb": [4, 6, 18], "09": [4, 18], "simple_arctan_fit": [4, 5, 18], "362": [4, 5, 18], "model1d": [5, 16], "currentcomponentvalu": 5, "activ": [5, 16, 22, 24], "paramet": [5, 10, 11, 12, 13, 15, 16, 17, 22, 23, 25], "free": [5, 10, 11, 12, 16, 17, 22], "valu": [5, 9, 12, 13, 16, 17, 21, 22, 25], "min": [5, 13, 17], "max": [5, 13, 17], "linear": [5, 12, 17], "A": [5, 6, 12, 13, 15, 16, 17, 19, 21, 22, 25], "99768626": 5, "00216762": 5, "none": [5, 12, 13, 16, 17], "k": [5, 12, 13, 15, 19, 21, 22, 25], "87503084": 5, "07023353": 5, "x0": [5, 12], "02853840": 5, "08660922": 5, "make": [5, 9, 20, 22], "500": 5, "axes_manag": [5, 12, 17, 21], "offset": [5, 12, 13, 16, 17, 21], "unit": [5, 17, 20, 21, 25], "metadata": [5, 7, 10, 11, 15, 16, 17, 21, 22, 23], "titl": [5, 13, 17, 21, 22], "set_signal_origin": 5, "simul": [5, 13, 16, 17, 22], "add_gaussian_nois": 5, "compon": [5, 7, 14, 15, 16, 17, 21, 22], "us": [5, 7, 8, 9, 10, 11, 12, 13, 15, 16, 17, 19, 20, 21, 22, 23, 25], "arctan_compon": 5, "print": [5, 16, 17, 22], "print_current_valu": [5, 21], "000": 6, "n": [6, 17, 22, 24, 25], "entri": 7, "develop": [7, 9, 24], "version": [7, 8, 10, 11, 15, 22, 24], "ar": [7, 8, 9, 10, 11, 12, 13, 16, 17, 20, 21, 22, 24, 25], "avail": [7, 12, 16, 17, 21, 22], "http": [7, 12, 15, 19, 21], "exspi": [7, 9, 14, 21, 22, 23, 24], "readthedoc": [7, 12], "io": [7, 12], "en": [7, 15], "latest": 7, "chang": [7, 9, 16, 17, 19, 21, 22], "html": [7, 12, 17], "logo": 7, "adapt": [7, 12], "spell": 7, "capit": [7, 25], "ruff": 7, "lint": 7, "format": [7, 17, 21, 22], "remov": [7, 16, 17, 22], "redund": 7, "github": [7, 9, 24], "workflow": [7, 9], "favour": 7, "pre": [7, 17], "commit": 7, "27": 7, "support": [7, 12, 16, 17, 22], "tabul": [7, 19, 22], "generalis": 7, "oscil": 7, "strength": 7, "gosh": [7, 12, 16, 17, 22], "open": [7, 10, 11, 17, 24], "By": [7, 17, 21, 22, 25], "default": [7, 12, 13, 16, 17, 21, 22, 25], "freeli": [7, 22], "usabl": [7, 22], "dataset": [7, 12, 17, 21, 22], "doi": [7, 8, 10, 11, 12, 15, 16, 17, 19, 22], "5281": [7, 16, 17, 22], "zenodo": [7, 16, 17, 22], "7645765": [7, 16, 17, 22], "3082": 7, "fine": [7, 12, 16, 21], "structur": [7, 9, 12, 16, 17, 21, 23], "e": [7, 10, 11, 12, 15, 17, 19, 20, 21, 22, 25], "g": [7, 10, 11, 12, 15, 17, 21, 22, 25], "gaussian": [7, 12, 16, 17, 21, 22], "3206": 7, "enabl": [7, 16, 17, 21, 22], "signal_rang": [7, 17, 22], "argument": [7, 12, 16, 17, 21, 22], "when": [7, 9, 17, 21, 22, 25], "subpixel": [7, 17, 22], "align_zero_loss_peak": [7, 17, 22], "towncrier": 7, "manag": 7, "releas": [7, 8, 24], "note": [7, 12, 13, 16, 17, 20, 21, 22, 25], "set": [7, 12, 13, 16, 17, 20, 21, 22], "dev": 7, "reusabl": 7, "organis": 7, "doc": [7, 9], "consolid": 7, "pyproject": 7, "toml": 7, "setuptools_scm": 7, "holospi": [7, 8], "build": [7, 16], "test": [7, 12, 17, 21], "wa": [7, 12, 21], "split": [7, 12], "out": [7, 9, 10, 11, 17, 21, 22], "repositori": [7, 9, 24], "oct": 7, "The": [7, 8, 9, 10, 11, 12, 13, 15, 16, 17, 19, 20, 21, 22, 25], "rai": [7, 10, 11, 15, 16, 17, 19, 23, 25], "energi": [7, 10, 11, 12, 13, 15, 16, 17, 19, 23, 25], "dispers": [7, 10, 11, 17, 19, 23, 25], "spectroscopi": [7, 10, 11, 12, 17, 19, 23, 25], "ed": [7, 10, 11, 13, 16, 17, 19, 23], "electron": [7, 10, 11, 12, 13, 17, 19, 23, 25], "loss": [7, 10, 11, 12, 13, 16, 17, 19, 23, 25], "so": [7, 17, 21, 22], "far": [7, 22], "were": 7, "move": 7, "maintain": [8, 9, 10, 11], "commun": [8, 9, 10, 11], "_": 8, "If": [8, 9, 10, 11, 12, 13, 15, 16, 17, 21, 22, 24, 25], "been": [8, 10, 11, 12, 17], "signific": [8, 9, 10, 11], "project": [8, 9, 10, 11, 17], "lead": [8, 10, 11, 17], "academ": [8, 10, 11], "public": [8, 10, 11], "pleas": [8, 9, 10, 11, 17, 21, 24], "acknowledg": [8, 10, 11], "fact": [8, 10, 11], "badg": [8, 10, 11], "concept": [8, 10, 11], "can": [8, 9, 10, 11, 16, 17, 20, 21, 22, 24, 25], "without": [8, 10, 11, 12, 21, 22], "refer": [8, 9, 10, 11, 12, 16, 17, 19, 21, 24, 25], "specif": [8, 10, 11, 13, 17, 21, 22, 25], "you": [8, 9, 10, 11, 16, 17, 21, 22, 24], "becaus": [8, 10, 11, 17, 22], "have": [8, 10, 11, 12, 17, 21, 22, 24], "process": [8, 9, 10, 11, 16, 25], "emploi": [8, 10, 11], "find": [8, 10, 11, 17, 24], "click": [8, 10, 11, 22], "To": [8, 17, 20, 21, 22, 24], "updat": [8, 16, 22, 23], "after": [8, 16, 17, 21, 22], "first": [8, 15, 16, 17, 21, 22, 24, 25], "meant": 9, "we": [9, 10, 11, 21, 22, 24], "welcom": 9, "form": [9, 10, 11, 15, 16, 17, 19], "bug": 9, "report": 9, "featur": [9, 17, 22], "more": [9, 10, 11, 12, 13, 16, 17, 21, 22, 24], "In": [9, 17, 21, 22, 24], "follow": [9, 12, 16, 17, 21, 22, 24, 25], "some": [9, 13, 17, 22], "resourc": 9, "help": [9, 10, 11, 17, 22], "tracker": 9, "propos": 9, "give": [9, 17, 20, 22], "minim": [9, 16], "demonstr": 9, "copi": [9, 12, 16, 17], "past": 9, "error": [9, 13, 21], "want": [9, 22, 24], "send": 9, "u": 9, "small": [9, 17], "fix": [9, 12, 16, 21], "correct": [9, 12, 16, 17, 19, 22], "user": [9, 10, 11, 12, 16, 17, 21, 24], "guid": [9, 10, 11, 16, 17, 24], "typic": [9, 17, 21], "good": [9, 17, 22], "start": [9, 10, 11, 17], "point": [9, 16, 17, 22], "But": 9, "don": [9, 17], "t": [9, 15, 17, 19, 20], "hesit": 9, "also": [9, 13, 16, 17, 21, 22, 24, 25], "need": [9, 16, 17, 21, 22, 24], "get": [9, 10, 11, 13, 22, 23], "readi": 9, "common": 9, "standard": [9, 13, 16, 17, 19, 21, 22], "order": [9, 13, 16, 17, 21, 22], "detail": [9, 10, 11, 12, 16, 17, 19, 21, 22, 24, 25], "guidelin": [9, 10, 11], "kikuchipi": 9, "contributor": 9, "anoth": [9, 17, 21, 22, 25], "extens": [9, 10, 11], "valuabl": 9, "provid": [9, 10, 11, 13, 16, 17, 21, 22], "As": [9, 22], "qualiti": 9, "assur": 9, "improv": [9, 17, 21, 22], "ensur": 9, "thoroughli": 9, "least": [9, 12, 16], "one": [9, 12, 13, 16, 17, 21, 22, 24], "other": [9, 16, 17, 22, 24], "member": 9, "team": 9, "befor": [9, 10, 11, 17, 21, 22], "being": [9, 17, 21], "merg": 9, "consist": [9, 13, 17, 21, 22], "three": [9, 17, 19, 21, 22], "element": [9, 12, 13, 15, 16, 17, 25], "docstr": [9, 16, 17], "individu": [9, 16], "method": [9, 12, 16, 17, 19, 20, 21, 22, 25], "written": 9, "host": 9, "read": [9, 10, 11, 16, 17, 25], "part": [9, 16, 19, 22], "demo": 9, "tutori": [9, 10, 11, 21], "alwai": [9, 17], "wai": [9, 10, 11, 21], "learn": [9, 17, 19], "through": [9, 17, 21], "respect": [9, 13, 25], "black": [9, 17], "For": [9, 10, 11, 12, 16, 17, 21, 22], "numpydoc": 9, "should": [9, 16, 17, 21, 22, 25], "block": 9, "blank": 9, "between": [9, 12, 15, 16, 17, 21, 22], "them": [9, 16, 17, 21, 22], "librari": [9, 10, 11, 24], "like": [9, 16, 17], "type": [9, 12, 13, 15, 16, 17, 20, 21, 22, 25], "third": 9, "parti": 9, "final": [9, 17, 21], "via": [9, 17, 19], "pytest": 9, "framework": 9, "resid": 9, "directori": 9, "short": [9, 10, 11], "compar": 9, "output": [9, 17, 21, 22], "known": [9, 16, 17, 22], "answer": 9, "further": [9, 10, 11, 16, 21], "inform": [9, 10, 11, 12, 16, 17, 21, 22, 25], "semant": 9, "number": [9, 10, 11, 12, 13, 17, 21, 22, 23, 25], "therefor": [9, 17, 20, 21, 22], "major": [9, 17, 22], "minor": [9, 17, 22], "patch": 9, "each": [9, 13, 15, 16, 17, 21], "depend": [9, 16, 17, 22, 24], "accord": [9, 12, 17], "increas": [9, 10, 11, 17, 21], "incompat": 9, "ad": [9, 13, 16, 17, 21, 22], "backward": 9, "compat": 9, "manner": [9, 16, 17, 22], "push": 9, "pypi": [9, 24], "conda": [9, 23], "forg": [9, 24], "extend": [10, 11, 16, 21, 25], "multi": [10, 11, 16, 21], "dimension": [10, 11, 19, 21], "analysi": [10, 11, 12, 17, 19, 21, 23], "It": [10, 11, 12, 16, 17, 21, 22], "aim": [10, 11], "check": [10, 11, 24], "instal": [10, 11, 23], "section": [10, 11, 17, 19, 21, 22, 24, 25], "includ": [10, 11, 12, 16, 17, 21, 22, 24], "how": [10, 11], "thi": [10, 11, 12, 13, 16, 17, 21, 22, 25], "everyon": [10, 11], "contribut": [10, 11, 17], "our": [10, 11], "see": [10, 11, 12, 13, 14, 15, 16, 17, 20, 21, 22, 24, 25], "new": [10, 11, 16, 17, 19, 22], "ecosystem": [10, 11], "introduct": [10, 11], "basic": [10, 11, 22], "usag": [10, 11, 17], "depth": [10, 11], "kei": [10, 11, 12, 13, 16, 17], "along": [10, 11, 16, 17, 21, 22, 25], "background": [10, 11, 12, 13, 16, 17, 22], "explan": [10, 11], "applic": [10, 11, 21], "progam": [10, 11], "interfac": [10, 11, 12, 17], "which": [10, 11, 16, 17, 21, 22, 25], "describ": [10, 11, 17, 22, 23, 25], "work": [10, 11, 17, 24, 25], "illustr": [10, 11], "task": [10, 11, 22], "whole": [10, 11, 17, 22], "its": [10, 11, 15, 16, 17, 20, 22, 25], "There": [10, 11, 22], "mani": [10, 11, 17, 22], "given": [10, 11, 13, 15, 16, 17, 20, 21, 22, 25], "articl": [10, 11], "do": [10, 11, 17, 24], "list": [10, 11, 12, 13, 15, 16, 17, 21, 22, 25], "up": [10, 11, 16, 17, 21, 22], "date": [10, 11], "search": [10, 11, 13, 17, 21, 22, 25], "databas": [10, 11, 13, 15, 22], "googl": [10, 11], "scholar": [10, 11], "publish": [10, 11], "2012": [10, 11], "mai": [10, 11, 17, 21], "mention": [10, 11], "under": [10, 11, 16, 21], "old": [10, 11, 17], "eelslab": [10, 11], "softwar": [10, 11, 17, 21], "redistribut": [10, 11], "modifi": [10, 11, 17], "term": [10, 11], "gnu": [10, 11], "gpl": [10, 11], "foundat": [10, 11], "either": [10, 11, 17, 21, 25], "your": [10, 11, 16], "option": [10, 11, 12, 13, 16, 17, 21, 22, 24], "ani": [10, 11, 12, 13, 16, 17, 21, 22, 25], "later": [10, 11], "distribut": [10, 11, 12, 16, 17, 24], "hope": [10, 11], "warranti": [10, 11], "even": [10, 11], "impli": [10, 11], "merchant": [10, 11], "particular": [10, 11, 21], "purpos": [10, 11, 17, 22], "class": [12, 13, 16, 17, 20, 21, 22, 25], "doublepowerlaw": [12, 14], "1e": 12, "05": 12, "r": [12, 15, 17, 19], "origin": [12, 16, 17], "shift": [12, 16, 17], "ratio": [12, 16, 17, 22], "left_cutoff": 12, "modul": [12, 17], "numexpr": 12, "compute_gradi": 12, "kwarg": [12, 16, 17], "base": [12, 13, 16, 17, 22, 24], "doubl": 12, "power": [12, 16, 17], "law": [12, 16, 17], "spectra": [12, 13, 17, 21, 22, 25], "f": [12, 17, 19, 20], "cdot": 12, "s_r": 12, "x_0": 12, "x_": 12, "variabl": 12, "float": [12, 13, 15, 16, 17, 21, 22, 25], "height": [12, 16, 21, 22], "coeffici": [12, 15, 17, 19], "locat": [12, 16, 17, 22], "two": [12, 16, 17, 20, 21, 22], "extra": [12, 16, 17, 25], "keyword": [12, 16, 17, 22], "pass": [12, 16, 17], "return": [12, 13, 15, 16, 17, 21, 22], "parameter_name_list": 12, "linear_parameter_list": 12, "function_nd": 12, "axi": [12, 16, 17, 22, 25], "arrai": [12, 15, 17, 21], "contain": [12, 13, 16, 17, 21, 22, 25], "indic": [12, 17], "enough": 12, "memori": [12, 17], "quickli": 12, "obtain": [12, 16, 17, 21, 22], "iter": [12, 16, 17, 21, 22], "over": [12, 17, 22], "ax": [12, 17, 21], "eelsarctan": [12, 14], "scipi": [12, 16, 17], "minimum": [12, 13, 16, 17, 22], "zero": [12, 13, 17, 20, 25], "left": [12, 16, 17, 20, 21], "frac": [12, 20], "pi": [12, 20], "right": [12, 16, 17, 20, 21], "amplitud": 12, "lim_": 12, "infti": 12, "2a": 12, "slope": 12, "steep": 12, "step": [12, 17, 21, 24], "larger": [12, 17, 21], "sharper": 12, "center": [12, 17, 21], "eelscledg": [12, 14, 16, 22], "element_subshel": 12, "gos_file_path": [12, 16, 17, 22], "as_dictionari": [12, 16, 17], "fullcopi": [12, 16], "dictionari": [12, 16, 17], "convent": [12, 25], "export_to_dictionari": [12, 16], "bool": [12, 13, 16, 17], "store": [12, 16, 17, 21, 22, 25], "found": [12, 16, 17, 21, 25], "pickl": [12, 16], "convert": [12, 15, 16, 17, 20], "dic": 12, "field": [12, 16, 25], "per": [12, 16, 17, 20, 21], "_whitelist": [12, 16], "dict": [12, 16, 17], "properti": [12, 16, 20, 21, 22], "fine_structure_smooth": [12, 22], "control": [12, 16, 22], "level": 12, "smooth": [12, 17, 22], "must": [12, 13, 17, 21, 22], "real": [12, 17, 22], "higher": [12, 21], "fix_fine_structur": [12, 16, 22], "spline": [12, 22], "free_fine_structur": [12, 16, 22], "onli": [12, 15, 16, 17, 21, 22, 24, 25], "previous": [12, 17, 21], "fine_structure_spline_act": [12, 22], "count": [12, 17], "barn": [12, 21], "get_fine_structure_as_signal1d": 12, "multipl": [12, 16, 17, 21, 22], "scatter": [12, 15, 16, 17, 19, 20], "convolv": [12, 16, 17, 22], "low": [12, 13, 16, 17, 22], "gui": [12, 21], "displai": [12, 13, 17, 21, 22], "toolkit": [12, 17], "interact": [12, 15, 17, 22], "widget": [12, 17], "usual": [12, 16, 17, 21, 22], "customis": [12, 17], "str": [12, 15, 16, 17, 25], "string": [12, 13, 16, 17, 25], "select": [12, 16, 17, 21, 22], "inter": [12, 17], "e0": 12, "alpha": [12, 16, 21, 25], "beta": [12, 20, 25], "energy_scal": 12, "microscop": [12, 13, 17, 19, 25], "beam": [12, 16, 17, 19, 21, 22, 25], "kev": [12, 15, 16, 17, 21, 22, 25], "converg": [12, 13, 17, 21, 22, 25], "semi": [12, 17, 20, 22, 25], "angl": [12, 17, 20, 22, 25], "mrad": [12, 17, 22, 25], "collect": [12, 13, 17, 20, 22, 25], "ev": [12, 13, 16, 17, 19, 21, 22, 25], "pesvoigt": [12, 14], "voigt": 12, "photoemiss": 12, "profil": [12, 17], "shirlei": 12, "non_isochromat": 12, "transmission_funct": 12, "spin": 12, "orbit": 12, "special": [12, 22], "suit": 12, "l": [12, 16, 22, 25], "where": [12, 17, 20, 21], "lorentzian": [12, 16], "approxim": [12, 13, 17, 22, 25], "formula": [12, 13], "david": 12, "area": [12, 16, 17, 21, 22, 25], "intens": [12, 16, 17, 23], "peak": [12, 13, 16, 17, 20, 21, 25], "centr": [12, 16, 17], "maximum": [12, 13, 16, 17, 21, 22, 25], "fwhm": [12, 17, 21, 22, 25], "sigma": [12, 16], "sqrt": 12, "log": [12, 16, 17, 22], "gamma": 12, "resolut": [12, 13, 16, 17, 21, 25], "shirley_background": 12, "spin_orbit_split": 12, "spin_orbit_branching_ratio": 12, "spin_orbit_splitting_energi": 12, "w": 12, "j": [12, 19], "appl": 12, "cryst": 12, "1986": 12, "63": [12, 21], "64": [12, 17], "1107": 12, "s0021889886089999": 12, "estimate_paramet": 12, "e1": [12, 16], "e2": [12, 16], "only_curr": [12, 16], "estim": [12, 15, 16, 17, 21], "calcul": [12, 15, 16, 17, 21, 22], "momenta": 12, "instanc": [12, 13, 16, 17], "x1": 12, "defin": [12, 16, 17, 21, 22], "limit": [12, 16, 17, 21], "spectral": [12, 16, 17, 22], "rang": [12, 16, 17, 22], "x2": 12, "exit": 12, "statu": 12, "requir": [12, 16, 17, 22, 24], "remove_background": 12, "cookbook": 12, "item": [12, 17, 25], "fittingdata": 12, "2000": 12, "scale": [12, 16, 17, 21], "phi": 12, "secondari": 12, "emiss": 12, "begin": 12, "case": [12, 17, 21, 22], "leq": 12, "tail": [12, 17], "asymmetri": 12, "vignet": [12, 14], "len": 12, "co": 12, "multipli": [12, 21], "edg": [12, 13, 16, 17, 22], "volumeplasmondrud": [12, 14], "plasmon_energi": 12, "drude": 12, "volum": [12, 17, 20], "plasmon": [12, 17, 22], "i_0": [12, 20], "delta": [12, 16, 17], "e_p": 12, "_compon": 12, "egerton": [12, 17, 19], "2nd": [12, 22], "edit": 12, "plenum": 12, "press": 12, "1996": [12, 19], "pp": 12, "154": 12, "158": 12, "equat": 12, "eds_sem_tm002": [13, 14, 17], "sem": [13, 16, 17, 21], "tm002": 13, "suppli": [13, 17, 21], "bundesanstalt": 13, "f\u00fcr": 13, "materialforschung": 13, "und": 13, "pr\u00fcfung": 13, "bam": [13, 21], "sampl": [13, 15, 16, 17, 20, 23], "\u00b5m": 13, "thick": [13, 17, 19, 20, 21], "layer": [13, 22], "c": [13, 15, 16, 17, 19, 21, 24], "al": [13, 15, 17, 21], "cu": [13, 15, 17, 21], "zr": [13, 17, 21], "silicon": 13, "substrat": 13, "www": [13, 21], "webshop": 13, "de": [13, 19, 20], "nvision40": 13, "carl": 13, "zeiss": 13, "detector": [13, 16, 17], "80": [13, 17, 21], "oxford": [13, 21], "instrument": [13, 17, 21, 25], "eds_tem_fept_nanoparticl": [13, 14, 17, 21], "tem": [13, 16, 17, 21], "fept": [13, 21], "bimetal": [13, 21], "nanoparticl": [13, 19, 21], "tecnai": 13, "osiri": 13, "200": 13, "kv": [13, 21], "d658": 13, "analyticaltwin": 13, "super": [13, 21], "brucker": 13, "eels_mnf": [13, 14], "add_powerlaw": 13, "add_nois": [13, 17], "navigation_shap": [13, 17], "artifici": 13, "core": [13, 16, 17, 22], "similar": 13, "l32": 13, "perovskit": 13, "oxid": 13, "random": [13, 16, 17], "experiment": [13, 16, 21, 22], "powerlaw": [13, 16, 17, 22], "seed": 13, "reproduc": [13, 22], "int": [13, 16, 17, 25], "randomst": 13, "tupl": [13, 16, 17, 22], "shape": [13, 17, 22], "space": [13, 17], "length": [13, 17, 22, 25], "eelsspectrum": [13, 14, 16, 17, 22], "eels_mn": 13, "With": [13, 21], "eels_low_loss": [13, 14], "eelsdb": [13, 14, 22], "spectrum_typ": [13, 22], "author": 13, "min_energi": 13, "max_energi": 13, "min_energy_compar": 13, "gt": 13, "max_energy_compar": 13, "lt": 13, "resolution_compar": 13, "max_n": 13, "monochrom": [13, 17], "order_direct": 13, "asc": 13, "verify_certif": 13, "show_progressbar": [13, 17], "coreloss": [13, 22], "lowloss": [13, 17, 22], "zeroloss": 13, "xrayab": 13, "text": 13, "filter": [13, 17], "presenc": 13, "correspond": [13, 15, 16, 17, 21, 22], "valid": [13, 15, 16, 17], "symbol": [13, 15, 16, 17, 22, 25], "chemic": [13, 17, 19, 21, 22], "l1": [13, 16], "l2": [13, 16], "m2": [13, 16], "m4": 13, "n2": 13, "n4": 13, "o2": 13, "o4": 13, "eq": 13, "less": [13, 17, 21], "than": [13, 17, 21, 22], "equal": [13, 15, 17], "greater": 13, "deafault": 13, "sort": [13, 17], "spectrumtyp": 13, "spectrummin": 13, "spectrummax": 13, "stepsiz": 13, "spectrumformula": 13, "spectrumel": 13, "spectrumupload": 13, "source_pur": 13, "spectrumedg": 13, "guntyp": 13, "beamenergi": 13, "acquisition_mod": [13, 25], "probes": 13, "beamcurr": 13, "integratetim": 13, "readout": 13, "darkcurr": 13, "gainvari": 13, "calibr": [13, 16, 17], "zeroloss_deconv": 13, "deconv_fourier_log": 13, "deconv_fourier_ratio": 13, "deconv_stephens_deconvolut": 13, "deconv_richardson_luci": 13, "deconv_maximum_entropi": 13, "deconv_oth": 13, "assoc_spectra": 13, "ref_freetext": 13, "ref_doi": 13, "ref_url": 13, "ref_author": 13, "ref_journ": 13, "ref_volum": 13, "ref_issu": 13, "ref_pag": 13, "ref_year": 13, "ref_titl": 13, "otherurl": 13, "desc": 13, "direct": 13, "verifi": 13, "websit": 13, "certif": 13, "rais": [13, 16, 17, 21], "invalid": 13, "continu": [13, 16, 22], "queri": 13, "potenti": 13, "secur": 13, "risk": 13, "progress": [13, 16, 17, 19], "bar": [13, 17], "prefer": [13, 17, 21], "match": [13, 17, 22], "criteria": 13, "materi": [14, 17, 19, 21, 22], "atomic_to_weight": [14, 15, 21], "density_of_mixtur": [14, 15], "mass_absorption_coeffici": [14, 15, 21], "mass_absorption_mixtur": [14, 15, 21], "weight_to_atom": [14, 15, 21], "edsmodel": [14, 16, 17], "edssemmodel": [14, 16, 17], "edstemmodel": [14, 16, 17], "eelsmodel": [14, 16, 17, 22], "dielectricfunct": [14, 17, 20], "edssemspectrum": [14, 16, 17, 21], "edsspectrum": [14, 16, 17], "edstemspectrum": [14, 16, 17, 21], "lazydielectricfunct": [14, 17], "lazyedssemspectrum": [14, 17], "lazyedsspectrum": [14, 17], "lazyedstemspectrum": [14, 17], "lazyeelsspectrum": [14, 17], "atomic_perc": [15, 21], "auto": [15, 17, 21], "atom": [15, 17, 19, 20, 21, 22], "percent": [15, 17, 21], "weight": [15, 16, 17, 21], "fraction": [15, 16, 17], "composit": [15, 17, 21], "abbrevi": [15, 21], "zn": [15, 16, 21], "take": [15, 17, 22], "weight_perc": [15, 17, 21], "modern": 15, "bronz": 15, "sn": 15, "00501989": 15, "99498011": 15, "mean": [15, 16, 17, 22], "harmon": 15, "densiti": [15, 17, 21, 22], "mixtur": 15, "retriev": [15, 21, 22], "intern": [15, 17], "differ": [15, 16, 17, 21, 22], "divid": [15, 17], "sum": [15, 17, 20], "normal": [15, 17], "cm3": 15, "6903187973131466": 15, "mass": [15, 17, 19, 20], "absorpt": [15, 17, 19], "mu": 15, "rho": 15, "absorb": 15, "pure": [15, 21], "chantler2005": [15, 19, 21], "al_ka": [15, 16, 17, 21, 25], "cm": [15, 17, 21], "c_ka": [15, 16, 17, 21], "26330": [15, 21], "38933818": [15, 21], "372": [15, 21], "02616732": [15, 21], "dx": 15, "org": [15, 19], "18434": 15, "t4hs32": 15, "chantler": [15, 19], "olsen": [15, 19], "dragoset": [15, 19], "kishor": [15, 19], "kotochigova": [15, 19], "zucker": [15, 19], "d": [15, 16, 19], "2005": 15, "factor": [15, 17, 19, 21], "attenu": [15, 19], "tabl": [15, 17, 22], "dimens": [15, 17, 20, 21], "matrix": 15, "2587": [15, 21], "41616439": 15, "wt": 15, "th": 15, "19698614": 15, "80301386": 15, "auto_background": [16, 17], "auto_add_lin": [16, 17], "arg": [16, 17], "subclass": [16, 17, 20, 22], "automat": [16, 17, 21, 22, 24], "add_family_lin": [16, 17], "polynomi": [16, 17, 21], "add_polynomial_background": [16, 17], "creator": 16, "fit_background": [16, 21], "calibrate_energy_axi": [16, 21], "calibrate_xray_lin": [16, 21], "au_ma": 16, "sub_weight": [16, 21], "mn_la": [16, 17, 21], "bound": [16, 21], "xray_lin": [16, 17, 21, 25], "from_el": [16, 17], "xrai": [16, 17], "configur": [16, 22], "appropi": 16, "familii": 16, "ka": [16, 17, 21, 25], "kb": [16, 17, 21], "too": 16, "main": [16, 17, 21], "those": [16, 17, 22], "altern": [16, 17, 21, 24], "eg": [16, 17], "zn_ka": 16, "notimplementederror": [16, 17], "non": [16, 17, 22], "uniform": [16, 17], "background_compon": 16, "degre": [16, 17, 25], "freedom": 16, "dof": 16, "chi": 16, "squar": [16, 21], "chisq": 16, "all_alpha": 16, "width": [16, 17, 21, 22, 25], "place": [16, 17], "extrapol": [16, 17], "energy_resolution_mnka": [16, 17, 21, 25], "word": 16, "singl": [16, 17, 20, 21, 22], "sub": [16, 21], "famili": [16, 17], "current": [16, 17, 22, 25], "disable_xray_lin": [16, 21], "disabl": [16, 21, 22], "enable_xray_lin": [16, 21], "start_energi": [16, 17], "end_energi": 16, "windows_sigma": 16, "lower": [16, 17], "upper": [16, 17], "around": [16, 17, 22], "free_background": [16, 21], "fix_background": [16, 21], "fix_sub_xray_lines_weight": [16, 21], "establish": 16, "twin": 16, "fix_xray_lines_energi": [16, 21], "actual": [16, 22], "fix_xray_lines_width": [16, 21], "yscale": 16, "free_sub_xray_lines_weight": [16, 21], "free_xray_lines_energi": [16, 21], "001": 16, "free_xray_lines_width": [16, 21], "get_lines_intens": [16, 17, 21], "plot_result": [16, 17, 21], "only_on": [16, 17], "only_lin": [16, 17, 21], "corresp": 16, "undefin": [16, 17], "empti": [16, 17], "same": [16, 17, 21, 22, 25], "syntax": [16, 17], "add_lin": [16, 17, 21], "subset": [16, 17, 21], "oper": [16, 17, 24], "instead": [16, 17, 22], "highest": [16, 17, 21], "abov": [16, 17, 21, 22, 24], "overvoltag": [16, 17, 21], "util": [16, 17, 22, 23, 25], "plot_sign": [16, 17], "ta_ma": 16, "thing": [16, 17], "g1": [16, 22], "g2": [16, 22], "could": [16, 21], "Or": 16, "acquir": [16, 17, 22, 25], "constructor": 16, "auto_add_edg": [16, 17], "assum": [16, 17, 21, 22], "effect": [16, 17, 22, 23], "ioniz": [16, 17, 21, 22], "ionis": [16, 17, 22], "hydrogen": [16, 17, 22], "hartre": [16, 17, 22], "slater": [16, 17, 19, 22], "specifi": [16, 17, 21, 22], "path": [16, 17, 22], "recreat": [16, 17], "disable_background": [16, 22], "disable_edg": 16, "edges_list": 16, "onset": [16, 17, 22], "region": [16, 17, 22], "otherwis": [16, 17, 22, 25], "enable_edg": [16, 22], "enable_background": [16, 22], "disable_fine_structur": [16, 22], "set_all_edges_intensities_posit": [16, 22], "unset_all_edges_intensities_posit": [16, 22], "enable_free_onset_energi": [16, 22], "disable_free_onset_energi": [16, 22], "fix_edg": [16, 22], "free_edg": [16, 22], "onset_energi": [16, 22], "dure": [16, 17, 25], "freed": 16, "smart_fit": [16, 22], "optim": [16, 22], "algorithm": [16, 17, 22], "lm": 16, "levenberg": 16, "marquardt": 16, "trf": 16, "trust": 16, "reflect": [16, 17], "dogbox": 16, "dogleg": 16, "rectangular": 16, "odr": 16, "orthogon": 16, "distanc": [16, 21, 25], "regress": 16, "doe": [16, 17, 21, 22], "here": [16, 21], "document": [16, 17, 21, 22, 24, 25], "differenti": 16, "evolut": 16, "global": [16, 22], "differential_evolut": 16, "dual": [16, 19], "anneal": 16, "dual_ann": 16, "shgo": 16, "simplici": 16, "homologi": 16, "loss_funct": 16, "ml": 16, "poisson": [16, 17], "huber": 16, "callabl": 16, "neg": [16, 17], "likelihood": [16, 17], "mle": 16, "huber_delta": 16, "own": [16, 17], "grad": 16, "fd": 16, "analyt": [16, 22], "whether": [16, 17], "about": [16, 17, 22, 24, 25], "gradient": 16, "deriv": [16, 17, 22], "finit": 16, "scheme": 16, "numer": [16, 17], "fd_scheme": 16, "speed": 16, "sinc": [16, 17], "vector": [16, 17], "Not": [16, 17], "update_plot": 16, "slow": [16, 17], "down": [16, 22], "visual": [16, 21, 22], "print_info": [16, 17], "fit_output": 16, "optimizeresult": 16, "return_info": [16, 17], "chosen": [16, 17], "choic": [16, 17], "coordin": [16, 17], "quantifi": [16, 17, 22], "independ": [16, 24], "remove_fine_structure_data": [16, 22], "routin": [16, 22], "fine_structure_width": [16, 22], "resolve_fine_structur": [16, 22], "preedge_safe_window_width": 16, "i1": 16, "adjust": [16, 21, 22], "avoid": [16, 17, 22], "overlap": [16, 22], "everi": [16, 22, 25], "resume_auto_fine_structure_width": 16, "suspend_auto_fine_structure_width": [16, 22], "ext_force_posit": 16, "ext_bound": 16, "set_convolution_axi": 16, "precis": [16, 17], "convolut": 16, "cascad": 16, "style": 16, "procedur": [16, 22], "act": [16, 22], "deactiv": [16, 22], "Then": [16, 22], "repeat": [16, 22], "until": [16, 17, 21, 22], "simultan": [16, 22], "never": [16, 22], "two_area_background_estim": 16, "try": [16, 17, 21, 22], "guess": 16, "unset": 16, "lazi": 17, "counterpart": 17, "signal_dimens": 17, "bin": [17, 21], "transmiss": [17, 19, 25], "microscopi": [17, 19], "scan": [17, 21, 25], "dielectr": [17, 22, 23], "unbin": 17, "complexsignal1d": [17, 20], "ndarrai": 17, "axesmanag": [17, 21], "whose": 17, "might": 17, "mandatori": 17, "original_metadata": 17, "rag": 17, "overwrit": [17, 21], "noth": 17, "get_electron_energy_loss_spectrum": [17, 20], "zlp": [17, 22], "comput": [17, 21, 22, 23], "basesign": [17, 21, 22], "intengr": 17, "ii": [17, 22], "navigation_dimens": 17, "integr": [17, 20, 21, 22, 25], "nm": [17, 21, 25], "get_number_of_effective_electron": [17, 20], "nat": 17, "cumul": 17, "beth": [17, 20], "rule": [17, 20], "rise": [17, 20], "definit": [17, 20], "neff1": 17, "neff2": 17, "n_": [17, 20], "mathrm": [17, 20], "eff_": 17, "eff": 17, "im": [17, 20], "epsilon": [17, 20], "epsilon_": [17, 20], "both": [17, 20, 21, 22], "molecul": [17, 20], "springer": [17, 19], "verlag": [17, 19], "2011": [17, 19], "kward": 17, "measur": [17, 22, 25], "boolean": 17, "get_calibration_from": [17, 21], "ref": 17, "nb_pix": 17, "primari": 17, "rippl": 17, "inca": [17, 21], "live": 17, "dead": [17, 25], "pixel": [17, 21], "averag": [17, 21], "live_tim": [17, 21, 25], "tilt_stag": [17, 21], "azimuth_angl": [17, 21, 25], "elevation_angl": [17, 21, 25], "mode": 17, "fill": 17, "acquisition_instru": [17, 21, 23], "135": 17, "now": [17, 21, 24], "130": [17, 21], "set_el": [17, 21], "set_lin": [17, 21], "although": [17, 21], "thei": [17, 21, 22], "ocassion": 17, "custom": [17, 22], "fe_kb": 17, "addition": [17, 21], "cu_la": [17, 21], "zr_la": [17, 21], "cu_ka": [17, 21], "mn_ka": [17, 21], "add_xray_lines_mark": 17, "render_figur": 17, "marker": [17, 21], "spec": 17, "estimate_background_window": [17, 21], "line_width": [17, 21], "windows_width": 17, "window": [17, 21, 22], "els": [17, 24], "windows_posit": 17, "2d": 17, "bw": [17, 21], "background_window": [17, 21], "fe_ka": [17, 21], "4039": 17, "2754": 17, "pt_la": [17, 21], "4421": 17, "15090": 17, "estimate_integration_window": 17, "integration_window": [17, 21], "row": 17, "iw": 17, "3710": 17, "15872": 17, "map": [17, 21], "sume": 17, "subtract": 17, "while": [17, 21, 22], "ambigu": 17, "allow": [17, 22], "integration_windows_width": 17, "63316": [17, 21], "96700": 17, "8987": [17, 21], "53597": 17, "46716": 17, "get_take_off_angl": 17, "off": [17, 21], "toa": 17, "leav": [17, 25], "surfac": [17, 22, 25], "toward": 17, "stage": [17, 21], "tilt_alpha": [17, 25], "tilt_beta": [17, 25], "take_off_angl": 17, "57": [17, 21], "plot_mark": 17, "autoscal": 17, "v": [17, 20], "norm": 17, "navigator_kwd": 17, "associ": 17, "link": [17, 21], "explor": 17, "imag": [17, 21, 22], "stack": [17, 21], "horizont": 17, "slider": 17, "y": [17, 21, 24, 25], "z": [17, 19, 21, 25], "index": [17, 21, 22, 24], "notic": [17, 22], "compute_navig": 17, "signal_shap": 17, "navigator_shap": 17, "dynam": 17, "rgb": 17, "rgba": 17, "add_mark": 17, "perman": 17, "larg": 17, "veri": [17, 22], "addit": [17, 21, 22], "matplotlib": 17, "pyplot": 17, "imshow": 17, "prior": 17, "power_spectrum": 17, "complex": [17, 20, 22], "combin": 17, "charact": [17, 21], "vertic": 17, "maxima": 17, "reset": [17, 22], "rebin": 17, "new_shap": 17, "crop": 17, "smaller": 17, "interpol": 17, "twice": 17, "size": [17, 21, 22, 25], "underli": 17, "integ": 17, "fewer": 17, "quota": 17, "produc": [17, 21], "determin": [17, 19, 21], "appear": 17, "preserv": 17, "behaviour": 17, "kept": 17, "receiv": 17, "ones": [17, 25], "164": 17, "uint8": 17, "unit16": 17, "s2": 17, "uint16": 17, "keep": 17, "s3": 17, "unsign": 17, "platform": 17, "s4": 17, "uint32": 17, "remove_xray_lines_mark": 17, "render": 17, "figur": 17, "eras": 17, "rechunk": 17, "dataaxi": 17, "directli": [17, 21, 25], "duplic": 17, "chunk": 17, "retain": 17, "intend": 17, "integrate1d": 17, "erron": 17, "misus": 17, "warn": [17, 21], "var": 17, "indexmax": 17, "indexmin": 17, "valuemax": 17, "valuemin": 17, "1024": [17, 21], "signal2d": 17, "static": [17, 22], "cl_get_mass_thick": 17, "mass_thick": [17, 21], "calcult": 17, "cliff": [17, 19, 21], "lorim": [17, 19, 21], "initi": 17, "k_factor": 17, "quantif": [17, 22, 23], "edx": [17, 25], "kg": [17, 21], "m\u00b2": [17, 21], "decomposit": 17, "normalize_poissonian_nois": 17, "navigation_mask": 17, "appli": [17, 21, 22, 25], "learning_result": 17, "poissonian": 17, "approach": [17, 19, 21, 22], "mark": 17, "vacuum_mask": 17, "mask": 17, "threshold": [17, 22], "morpholog": 17, "svd": 17, "mlpca": 17, "sklearn_pca": 17, "nmf": 17, "sparse_pca": 17, "mini_batch_sparse_pca": 17, "rpca": 17, "orpca": 17, "ornmf": 17, "implement": [17, 22], "fit_transform": 17, "transform": [17, 21, 22], "scikit": 17, "output_dimens": 17, "auto_transpos": 17, "transpos": 17, "boost": 17, "signal_mask": 17, "var_arrai": 17, "varianc": 17, "pca": 17, "var_func": 17, "reproject": 17, "howev": [17, 21, 22], "sklearn": 17, "svd_solver": 17, "arpack": 17, "solver": 17, "polici": 17, "input": [17, 22], "500x500": 17, "extract": [17, 21], "smallest": 17, "effici": 17, "exact": 17, "truncat": 17, "afterward": 17, "lapack": 17, "linalg": 17, "postprocess": 17, "spars": 17, "strictli": [17, 22], "extmath": 17, "randomized_svd": 17, "treatment": 17, "_data_before_treat": 17, "restor": 17, "undo_treat": 17, "made": [17, 21], "benefici": 17, "care": 17, "taken": 17, "overwritten": 17, "si": [17, 21], "change_dtyp": 17, "keenan": 17, "p": [17, 19, 21], "kotula": 17, "account": [17, 22, 24], "multivari": 17, "tof": 17, "sim": 17, "surf": 17, "anal": 17, "36": 17, "2004": 17, "203": 17, "212": 17, "020028": 17, "get_probe_area": 17, "navigation_ax": 17, "probe": [17, 21], "nm\u00b2": [17, 21, 25], "\u03bcm": 17, "composition_unit": [17, 21], "absorption_correct": [17, 21], "convergence_criterion": 17, "probe_area": [17, 21, 25], "max_iter": [17, 21], "zeta": [17, 19, 21], "cross": [17, 19, 21], "success": 17, "percentag": 17, "critera": 17, "intensitii": 17, "cl": [17, 21], "cross_sect": [17, 21], "kfactor": [17, 21], "alphabet": [17, 21], "982": 17, "60": 17, "cr_ka": 17, "ni_ka": 17, "unless": 17, "specfi": 17, "travel": 17, "reach": [17, 21], "nb": 17, "criterium": 17, "threhsold": 17, "correciton": 17, "450226": [17, 21], "075602": [17, 21], "fe": [17, 21], "pt": [17, 21], "la": [17, 19, 21], "re": 17, "84": [17, 21], "59": [17, 21], "beam_curr": [17, 21, 25], "real_tim": [17, 21, 25], "na": [17, 21, 25], "133": 17, "312296": 17, "vacuum": [17, 20], "consid": 17, "opnen": 17, "s_vac": 17, "ones_lik": 17, "005": 17, "include_pre_edg": 17, "declar": [17, 22], "present": [17, 21], "NOT": 17, "valueerror": 17, "also_align": [17, 22], "print_stat": 17, "align": 17, "estimate_zero_loss_peak_centr": [17, 22], "proce": 17, "accuraci": [17, 22], "align1d": [17, 22], "ident": 17, "summari": 17, "statist": 17, "correl": 17, "nan": 17, "Will": 17, "within": [17, 22], "roi": 17, "s_ll": 17, "narrow": [17, 21, 22], "estimate_shift1d": 17, "edges_at_energi": [17, 22], "only_major": 17, "closest": [17, 22], "show": 17, "shown": [17, 21, 22], "nearbi": [17, 22], "ascend": 17, "similarli": [17, 21], "descend": 17, "ascii": 17, "environ": [17, 22], "estimate_elastic_scattering_intens": [17, 22], "rough": 17, "elast": 17, "constant": 17, "i0": 17, "estimate_elastic_scattering_threshold": [17, 22], "tol": [17, 22], "window_length": 17, "polynomial_ord": 17, "inflexion": [17, 22], "look": 17, "local": [17, 22], "often": [17, 22], "bulk": [17, 21], "smoother": [17, 22], "what": [17, 22], "restrict": 17, "toler": [17, 21, 22], "guarante": 17, "savitzki": 17, "golai": 17, "fall": 17, "minima": 17, "caus": [17, 22], "odd": 17, "couldn": 17, "find_peaks1d_ohav": [17, 21, 22], "fourier_ratio_deconvolut": [17, 22], "inde": [17, 22], "achiev": [17, 21], "awar": 17, "estimate_thick": [17, 22], "mean_free_path": 17, "rel": [17, 22], "absolut": [17, 22], "hyperspectrum": 17, "well": [17, 22], "roughli": 17, "across": [17, 22], "nanomet": 17, "angular": [17, 22], "mfp": 17, "just": 17, "coars": 17, "zlpc": 17, "meet": 17, "criterion": 17, "fourier_log_deconvolut": [17, 22], "add_zlp": 17, "fourier": 17, "deconvolut": 17, "deconvolv": 17, "channel": 17, "decai": 17, "smoothli": 17, "side": [17, 21], "extrapolate_lowloss": 17, "extrapolate_coreloss": 17, "reduc": [17, 22], "amplif": 17, "half": [17, 25], "snr": 17, "generate_subshel": 17, "subshel": 17, "get_zero_loss_peak_mask": 17, "zero_loss_peak_mask_width": 17, "kramers_kronig_analysi": [17, 22], "full_output": 17, "ssd": 17, "kramer": 17, "kronig": 17, "relat": [17, 22], "fft": [17, 22], "loop": 17, "devis": 17, "suppos": 17, "unoxid": 17, "planar": 17, "neglect": 17, "coupl": 17, "retard": 17, "broaden": 17, "excit": [17, 21, 22], "particl": 17, "refract": [17, 22], "medium": 17, "stabil": 17, "ep": 17, "epsilon_1": 17, "epsilon_2": 17, "matlab": 17, "wrap": 17, "problem": 17, "workaround": 17, "pad": 17, "plot_edg": 17, "only_edg": 17, "draw": 17, "zr_l": 17, "zr_l3": 17, "power_law_extrapol": 17, "window_s": 17, "extrapolation_s": 17, "fix_neg_r": 17, "flag": 17, "done": 17, "print_edges_near_energi": [17, 22], "sequenc": 17, "overrid": 17, "prettytext": 17, "represent": 17, "termin": 17, "richardson_lucy_deconvolut": [17, 22], "psf": 17, "num_work": 17, "1d": 17, "richardson": 17, "luci": 17, "kernel": 17, "spatial": [17, 21], "worker": 17, "dask": 17, "gloter": 17, "douiri": 17, "tenc": 17, "colliex": 17, "solut": 17, "ultramicroscopi": [17, 19], "96": [17, 19, 21], "septemb": 17, "2003": 17, "385": 17, "400": 17, "necessari": [17, 21, 22], "ui": 17, "spikes_diagnosi": 17, "histogram": 17, "choos": 17, "spike": 17, "get_histogram": 17, "spikes_removal_tool": 17, "graphic": 17, "luminesc": 17, "detect": 17, "introduc": 17, "artefact": 17, "mitig": 17, "interest": 17, "spikesremov": 17, "quarter": 17, "lazycomplexsignal1d": 17, "delai": [17, 22], "explicitli": 17, "request": [17, 21], "expect": 17, "instanti": 17, "da": 17, "as_lazi": 17, "lazysignal1d": 17, "burdet2013": [19, 21], "burdet": 19, "vannod": 19, "hessler": 19, "wyser": 19, "rappaz": 19, "cantoni": 19, "laser": 19, "weld": 19, "niti": 19, "stainless": 19, "steel": 19, "wire": 19, "fib": 19, "acta": 19, "materialia": 19, "2013": 19, "3090": 19, "3098": 19, "1016": 19, "actamat": 19, "069": 19, "photoelectr": 19, "92": 19, "mev": 19, "nist": 19, "physic": 19, "gov": 19, "ffast": 19, "egerton2011": [19, 20, 22], "1007": 19, "978": 19, "4419": 19, "9583": 19, "macarthur2016": [19, 21], "macarthur": 19, "haigh": 19, "ozkaya": 19, "nellist": 19, "lozano": 19, "perez": 19, "quantit": [19, 21], "catalyst": 19, "partial": 19, "microsc": 19, "microan": 19, "2016": 19, "71": 19, "81": 19, "1017": 19, "s1431927615015494": 19, "rossouw2015": [19, 21], "rossouw": 19, "pe\u00f1a": 19, "ducati": 19, "knappett": 19, "wheatlei": 19, "midglei": 19, "multicompon": 19, "unmix": 19, "nanoheterostructur": 19, "overcom": 19, "tradit": 19, "challeng": 19, "nanoscal": 19, "machin": 19, "nano": 19, "lett": 19, "2015": 19, "2716": 19, "2720": 19, "1021": 19, "ac": 19, "nanolett": 19, "5b00449": 19, "watanabe1996": [19, 21], "watanab": 19, "horita": 19, "nemoto": 19, "microanalysi": 19, "65": 19, "187": 19, "198": 19, "s0304": 19, "3991": 19, "00070": 19, "watanabe2006": [19, 21], "william": 19, "thin": [19, 21], "specimen": [19, 21], "review": 19, "221": 19, "2006": 19, "89": 19, "109": 19, "onlinelibrari": 19, "wilei": 19, "com": [19, 21], "1111": 19, "1365": 19, "2818": 19, "01549": 19, "williams2009": 19, "carter": 19, "textbook": 19, "scienc": 19, "york": 19, "2009": 19, "387": 19, "76501": 19, "inherit": [20, 22], "complexsign": 20, "thu": 20, "access": [20, 25], "sure": [20, 22], "properli": 20, "set_signal_typ": [20, 21, 22], "eff1": 20, "m_": 20, "hbar": 20, "int_": 20, "eff2": 20, "n_a": 20, "epsilon_0": 20, "permitt": [20, 22], "m_0": 20, "charg": 20, "naiv": 20, "2i_": 20, "a_": 20, "ln": [20, 21], "theta": 20, "characterist": 20, "chapter": [21, 22, 25], "130mb": 21, "urllib": 21, "urlretriev": 21, "urlopen": 21, "zipfil": 21, "dropbox": 21, "s7cx92mfh2zvt3x": 21, "hyperspy_demos_edx_sem_fil": 21, "raw": 21, "extractal": 21, "abl": 21, "among": 21, "rpl": 21, "bruker": 21, "export": 21, "ni_superalloy_1pix": 21, "record": [21, 25], "as_signal1d": 21, "back": 21, "ni_superalloy_010": 21, "256": 21, "224": 21, "wildcard": 21, "si4d": 21, "ni_superalloy_0": 21, "eds_tem": [21, 25], "eds_sem": [21, 25], "assign": [21, 22], "exist": 21, "These": [21, 24], "006855": 21, "38": 21, "eds_detector_elev": 21, "manual": [21, 22], "info": 21, "s1pixel": 21, "descript": [21, 22], "accept": 21, "sever": [21, 22], "onc": 21, "fe_la": 21, "example_sign": 21, "eds_sem_spectrum": 21, "general_properti": 21, "atomic_weight": 21, "55": [21, 22], "845": 21, "iron": 21, "physical_properti": 21, "874": 21, "atomic_properti": 21, "404": [21, 22], "0568": 21, "1272": 21, "705": 21, "lb3": 21, "792": 21, "02448": 21, "615": 21, "3086": 21, "62799": 21, "12525": 21, "nearest": 21, "get_xray_lines_near_energi": 21, "maxpeakn": 21, "ca_la": 21, "b_ka": 21, "visualis": 21, "3d": 21, "label": [21, 22, 25], "1mb": 21, "ecdlgwxjq04m5mx": 21, "hyperspy_demos_eds_tem_fil": 21, "hyperspy_demos_edx_tem_fil": 21, "core_shel": 21, "hdf5": [21, 22], "plot_imag": 21, "eds_map": 21, "axes_decor": 21, "scalebar": 21, "isig": 21, "tm001": 21, "next": [21, 22, 24], "One": 21, "65241": 21, "al_kb": 21, "ar_ka": 21, "3136": 21, "ar_kb": 21, "79258": 21, "1640": 21, "cu_kb": 21, "74032": 21, "cu_lb1": 21, "cu_ln": 21, "cu_ll": 21, "cu_lb3": 21, "47796": 21, "mn_kb": 21, "73665": 21, "mn_ln": 21, "mn_ll": 21, "mn_lb3": 21, "68703": 21, "zr_lb1": 21, "zr_lb2": 21, "zr_ln": 21, "zr_lg3": 21, "zr_ll": 21, "zr_lg1": 21, "zr_lb3": 21, "background_order_6": 21, "000000": 21, "131": 21, "927922": 21, "tune": 21, "4865": 21, "9577": 21, "2774": 21, "95": 21, "0478": 21, "9295": 21, "70": 21, "0423": 21, "75": 21, "manufactur": 21, "convers": 21, "possibl": [21, 22], "edx_cross_section_to_zeta": 21, "zeta_to_edx_cross_sect": 21, "carri": 21, "revers": 21, "acquisit": [21, 25], "dwell": [21, 25], "accur": [21, 22], "diamet": 21, "00125": 21, "high": 21, "subsequ": 21, "much": [21, 22], "illumin": [21, 25], "becom": 21, "put": [21, 22], "still": [21, 22], "messag": 21, "remind": 21, "rather": 21, "experi": 21, "additt": 21, "At": 21, "parallel": 21, "film": 21, "basi": 21, "particularli": 21, "inhomogen": 21, "system": [21, 24], "thermo": 21, "fisher": 21, "separ": [21, 22], "4161643905127": 21, "electron_rang": 21, "xray_rang": 21, "copper": 21, "micron": 21, "9361716759499248": 21, "carbon": 21, "30kv": 21, "density_gcm3": 21, "6418811280855454": 21, "8766744984001607": 21, "discuss": 22, "parent": 22, "previou": 22, "archiv": 22, "hspy": 22, "get_edges_near_energi": 22, "identifi": 22, "arrang": 22, "849": 22, "846": 22, "852": 22, "misc": [22, 25], "532": 22, "o_k": 22, "pd_m3": 22, "sb_m5": 22, "sb_m4": 22, "la_m4": 22, "fe_l1": 22, "artificial_data": 22, "get_core_loss_eels_sign": 22, "401": 22, "relev": [22, 24, 25], "n_k": 22, "abrupt": 22, "sc_l3": 22, "402": 22, "sharp": 22, "cd_m5": 22, "sc_l2": 22, "407": 22, "mo_m2": 22, "410": 22, "mo_m3": 22, "392": 22, "cd_m4": 22, "411": 22, "inspect": 22, "identif": 22, "drag": 22, "mous": 22, "button": 22, "toggl": 22, "complementari": 22, "box": 22, "tick": 22, "outsid": 22, "aid": 22, "iakoubovskii2008": 22, "inelast": 22, "imfp": 22, "unknown": 22, "robust": 22, "easi": 22, "quasi": 22, "rudimentari": 22, "wise": 22, "certain": 22, "impact": 22, "npoint": 22, "realli": 22, "boron": [22, 25], "nitrid": 22, "onlin": 22, "hexagon": 22, "worth": 22, "life": 22, "hand": 22, "plural": 22, "b_k": 22, "conveni": 22, "6599071": 22, "pooch": 22, "gosh10": 22, "url": 22, "segger_guzzinati_kohl_1": 22, "known_hash": 22, "md5": 22, "d65d5c23142532fde0a80e160ab51574": 22, "entir": 22, "elem": 22, "045648": 22, "048061": 22, "permit": 22, "easili": 22, "manifest": 22, "distinct": 22, "few": 22, "ten": 22, "due": 22, "variat": 22, "probabl": 22, "offer": 22, "insight": 22, "bond": 22, "cannot": 22, "principl": 22, "mimic": 22, "fine_structure_act": 22, "decreas": 22, "expens": 22, "fine_structure_coeff": 22, "Its": 22, "zoom": 22, "bn": 22, "let": 22, "nitrogen": [22, 25], "set_signal_rang": 22, "160": 22, "194": 22, "command": [22, 24], "better": 22, "closer": 22, "essenti": 22, "desir": 22, "sometim": 22, "suspend": 22, "resum": 22, "replac": [22, 24], "gaussianhf": 22, "b_k_l1": 22, "201": 22, "b_k_l2": 22, "know": 22, "would": 22, "simpli": 22, "fine_structure_compon": 22, "3rd": 22, "205": 22, "fine_structure_spline_onset": 22, "plot_compon": 22, "white": 22, "rest": 22, "pip": 23, "spectrometri": 23, "tool": 23, "bibliographi": 23, "instruct": 24, "pend": 24, "meantim": 24, "bundl": 24, "standalon": 24, "program": 24, "recommend": 24, "anyth": 24, "appropri": 24, "suggest": 24, "miniforg": 24, "alreadi": 24, "prompt": 24, "complet": 24, "troubl": 24, "especi": 24, "unfamiliar": 24, "enter": 24, "anaconda": 24, "scratch": 24, "jupyterlab": 24, "lab": 24, "upgrad": 24, "notifi": 24, "watch": 24, "tree": 25, "node": 25, "leaf": 25, "quantiti": 25, "dimensionless": 25, "_unit": 25, "suffix": 25, "besid": 25, "dictionarytreebrows": 25, "set_item": 25, "has_item": 25, "get_item": 25, "repres": 25, "diagram": 25, "parenthes": 25, "detector_typ": 25, "\u00ba": 25, "magnif": 25, "rotat": 25, "mm": 25, "working_dist": 25, "apertur": 25, "dwell_tim": 25, "exposur": 25, "frame_numb": 25, "spectromet": 25, "camera_length": 25, "compos": 25, "ni_lb": 25, "aluminum": 25, "nickel": 25, "vg": 25, "501": 25, "stem": 25, "camera": 25, "tilt": 25, "se": 25, "aperture_s": 25, "entranc": 25, "frame": 25, "gatan": 25, "enfinium": 25, "er": 25, "977": 25, "azimuth": 25, "perpendicular": 25, "elev": 25, "90": 25, "manganes": 25, "spent": 25, "compens": 25}, "objects": {"exspy": [[12, 0, 0, "-", "components"], [13, 0, 0, "-", "data"], [15, 0, 0, "-", "material"], [16, 0, 0, "-", "models"], [17, 0, 0, "-", "signals"]], "exspy.components": [[12, 1, 1, "", "DoublePowerLaw"], [12, 1, 1, "", "EELSArctan"], [12, 1, 1, "", "EELSCLEdge"], [12, 1, 1, "", "PESVoigt"], [12, 1, 1, "", "SEE"], [12, 1, 1, "", "Vignetting"], [12, 1, 1, "", "VolumePlasmonDrude"]], "exspy.components.DoublePowerLaw": [[12, 2, 1, "", "function_nd"], [12, 3, 1, "", "left_cutoff"]], "exspy.components.EELSCLEdge": [[12, 2, 1, "", "as_dictionary"], [12, 4, 1, "", "fine_structure_smoothing"], [12, 2, 1, "", "fix_fine_structure"], [12, 2, 1, "", "free_fine_structure"], [12, 2, 1, "", "function"], [12, 2, 1, "", "get_fine_structure_as_signal1D"], [12, 2, 1, "", "gui"], [12, 2, 1, "", "set_microscope_parameters"]], "exspy.components.PESVoigt": [[12, 2, 1, "", "estimate_parameters"]], "exspy.data": [[13, 5, 1, "", "EDS_SEM_TM002"], [13, 5, 1, "", "EDS_TEM_FePt_nanoparticles"], [13, 5, 1, "", "EELS_MnFe"], [13, 5, 1, "", "EELS_low_loss"], [13, 5, 1, "", "eelsdb"]], "exspy.material": [[15, 5, 1, "", "atomic_to_weight"], [15, 5, 1, "", "density_of_mixture"], [15, 5, 1, "", "mass_absorption_coefficient"], [15, 5, 1, "", "mass_absorption_mixture"], [15, 5, 1, "", "weight_to_atomic"]], "exspy.models": [[16, 1, 1, "", "EDSModel"], [16, 1, 1, "", "EDSSEMModel"], [16, 1, 1, "", "EDSTEMModel"], [16, 1, 1, "", "EELSModel"]], "exspy.models.EDSModel": [[16, 2, 1, "", "add_family_lines"], [16, 2, 1, "", "add_polynomial_background"], [16, 2, 1, "", "as_dictionary"], [16, 2, 1, "", "calibrate_energy_axis"], [16, 2, 1, "", "calibrate_xray_lines"], [16, 2, 1, "", "disable_xray_lines"], [16, 2, 1, "", "enable_xray_lines"], [16, 2, 1, "", "fit_background"], [16, 2, 1, "", "fix_background"], [16, 2, 1, "", "fix_sub_xray_lines_weight"], [16, 2, 1, "", "fix_xray_lines_energy"], [16, 2, 1, "", "fix_xray_lines_width"], [16, 2, 1, "", "free_background"], [16, 2, 1, "", "free_sub_xray_lines_weight"], [16, 2, 1, "", "free_xray_lines_energy"], [16, 2, 1, "", "free_xray_lines_width"], [16, 2, 1, "", "get_lines_intensity"], [16, 2, 1, "", "remove"]], "exspy.models.EELSModel": [[16, 2, 1, "", "append"], [16, 2, 1, "", "disable_background"], [16, 2, 1, "", "disable_edges"], [16, 2, 1, "", "disable_fine_structure"], [16, 2, 1, "", "disable_free_onset_energy"], [16, 2, 1, "", "enable_background"], [16, 2, 1, "", "enable_edges"], [16, 2, 1, "", "enable_fine_structure"], [16, 2, 1, "", "enable_free_onset_energy"], [16, 2, 1, "", "fit"], [16, 2, 1, "", "fit_background"], [16, 2, 1, "", "fix_edges"], [16, 2, 1, "", "fix_fine_structure"], [16, 2, 1, "", "free_edges"], [16, 2, 1, "", "free_fine_structure"], [16, 2, 1, "", "quantify"], [16, 2, 1, "", "remove"], [16, 2, 1, "", "remove_fine_structure_data"], [16, 2, 1, "", "resolve_fine_structure"], [16, 2, 1, "", "resume_auto_fine_structure_width"], [16, 2, 1, "", "set_all_edges_intensities_positive"], [16, 2, 1, "", "set_convolution_axis"], [16, 4, 1, "", "signal"], [16, 2, 1, "", "smart_fit"], [16, 2, 1, "", "suspend_auto_fine_structure_width"], [16, 2, 1, "", "two_area_background_estimation"], [16, 2, 1, "", "unset_all_edges_intensities_positive"]], "exspy.signals": [[17, 1, 1, "", "DielectricFunction"], [17, 1, 1, "", "EDSSEMSpectrum"], [17, 1, 1, "", "EDSSpectrum"], [17, 1, 1, "", "EDSTEMSpectrum"], [17, 1, 1, "", "EELSSpectrum"], [17, 1, 1, "", "LazyDielectricFunction"], [17, 1, 1, "", "LazyEDSSEMSpectrum"], [17, 1, 1, "", "LazyEDSSpectrum"], [17, 1, 1, "", "LazyEDSTEMSpectrum"], [17, 1, 1, "", "LazyEELSSpectrum"]], "exspy.signals.DielectricFunction": [[17, 2, 1, "", "get_electron_energy_loss_spectrum"], [17, 2, 1, "", "get_number_of_effective_electrons"]], "exspy.signals.EDSSEMSpectrum": [[17, 2, 1, "", "create_model"], [17, 2, 1, "", "get_calibration_from"], [17, 2, 1, "", "set_microscope_parameters"]], "exspy.signals.EDSSpectrum": [[17, 2, 1, "", "add_elements"], [17, 2, 1, "", "add_lines"], [17, 2, 1, "", "add_xray_lines_markers"], [17, 2, 1, "", "estimate_background_windows"], [17, 2, 1, "", "estimate_integration_windows"], [17, 2, 1, "", "get_lines_intensity"], [17, 2, 1, "", "get_take_off_angle"], [17, 2, 1, "", "plot"], [17, 2, 1, "", "rebin"], [17, 2, 1, "", "remove_xray_lines_markers"], [17, 2, 1, "", "set_elements"], [17, 2, 1, "", "set_lines"], [17, 2, 1, "", "sum"]], "exspy.signals.EDSTEMSpectrum": [[17, 2, 1, "", "CL_get_mass_thickness"], [17, 2, 1, "", "create_model"], [17, 2, 1, "", "decomposition"], [17, 2, 1, "", "get_calibration_from"], [17, 2, 1, "", "get_probe_area"], [17, 2, 1, "", "quantification"], [17, 2, 1, "", "set_microscope_parameters"], [17, 2, 1, "", "vacuum_mask"]], "exspy.signals.EELSSpectrum": [[17, 2, 1, "", "add_elements"], [17, 2, 1, "", "align_zero_loss_peak"], [17, 2, 1, "", "create_model"], [17, 2, 1, "", "edges_at_energy"], [17, 2, 1, "", "estimate_elastic_scattering_intensity"], [17, 2, 1, "", "estimate_elastic_scattering_threshold"], [17, 2, 1, "", "estimate_thickness"], [17, 2, 1, "", "estimate_zero_loss_peak_centre"], [17, 2, 1, "", "fourier_log_deconvolution"], [17, 2, 1, "", "fourier_ratio_deconvolution"], [17, 2, 1, "", "generate_subshells"], [17, 2, 1, "", "get_zero_loss_peak_mask"], [17, 2, 1, "", "kramers_kronig_analysis"], [17, 2, 1, "", "plot"], [17, 2, 1, "", "power_law_extrapolation"], [17, 2, 1, "", "print_edges_near_energy"], [17, 2, 1, "", "rebin"], [17, 2, 1, "", "richardson_lucy_deconvolution"], [17, 2, 1, "", "set_microscope_parameters"], [17, 2, 1, "", "spikes_diagnosis"], [17, 2, 1, "", "spikes_removal_tool"], [17, 2, 1, "", "vacuum_mask"]]}, "objtypes": {"0": "py:module", "1": "py:class", "2": "py:method", "3": "py:attribute", "4": "py:property", "5": "py:function"}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "class", "Python class"], "2": ["py", "method", "Python method"], "3": ["py", "attribute", "Python attribute"], "4": ["py", "property", "Python property"], "5": ["py", "function", "Python function"]}, "titleterms": {"galleri": 0, "exampl": 0, "model": [0, 2, 16, 22], "fit": [0, 1, 2, 5, 21, 22], "eel": [1, 22, 25], "curv": [1, 21, 22], "plot": [3, 21], "residu": 3, "comput": [4, 6, 18, 20], "time": [4, 6, 18], "simpl": 5, "arctan": 5, "changelog": 7, "unreleas": 7, "2024": 7, "02": 7, "16": 7, "improv": 7, "document": [7, 9, 10, 11], "mainten": 7, "0": 7, "1": [7, 24], "2023": 7, "12": 7, "03": 7, "new": [7, 9, 24], "featur": 7, "enhanc": 7, "initi": 7, "10": 7, "28": 7, "cite": [8, 10, 11], "exspi": [8, 10, 11, 12, 13, 15, 16, 17, 25], "contribut": 9, "issu": 9, "pull": 9, "request": 9, "review": 9, "code": 9, "style": 9, "write": 9, "test": 9, "releas": 9, "version": 9, "welcom": [10, 11], "learn": [10, 11], "resourc": [10, 11], "citat": [10, 11], "scientif": [10, 11], "literatur": [10, 11], "licens": [10, 11], "compon": 12, "data": [13, 21, 22], "refer": 14, "materi": 15, "signal": [17, 20, 25], "bibliographi": 19, "dielectr": 20, "function": 20, "tool": [20, 22], "number": 20, "effect": 20, "electron": [20, 21, 22], "energi": [20, 21, 22], "loss": [20, 22], "dispers": 21, "x": 21, "rai": 21, "spectrometri": 21, "ed": [21, 25], "spectrum": 21, "load": 21, "paramet": 21, "microscop": 21, "detector": [21, 25], "axi": 21, "copi": 21, "calibr": 21, "describ": 21, "sampl": [21, 22, 25], "element": [21, 22], "line": 21, "databas": 21, "find": 21, "from": 21, "get": [21, 24], "intens": [21, 22], "an": 21, "background": 21, "subtract": 21, "quantif": 21, "absorpt": 21, "correct": 21, "util": 21, "mass": 21, "coeffici": 21, "rang": 21, "spectroscopi": 22, "analysi": 22, "composit": 22, "thick": 22, "estim": 22, "zero": 22, "peak": 22, "centr": 22, "align": 22, "deconvolut": 22, "elast": 22, "scatter": 22, "kramer": 22, "kronig": 22, "creat": [22, 24], "generalis": 22, "oscil": 22, "strength": 22, "fine": 22, "structur": [22, 25], "user": 23, "guid": 23, "instal": 24, "us": 24, "conda": 24, "environ": 24, "2": 24, "packag": 24, "3": 24, "start": 24, "pip": 24, "updat": 24, "metadata": 25, "gener": 25, "acquisition_instru": 25, "tem": 25, "sem": 25, "stage": 25}, "envversion": {"sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.intersphinx": 1, "sphinx": 60}, "alltitles": {"Gallery of Examples": [[0, "gallery-of-examples"]], "Model fitting": [[0, "model-fitting"], [2, "model-fitting"]], "EELS curve fitting": [[1, "eels-curve-fitting"], [22, "eels-curve-fitting"]], "Plot Residual": [[3, "plot-residual"]], "Computation times": [[4, "computation-times"], [6, "computation-times"], [18, "computation-times"]], "Simple arctan fit": [[5, "simple-arctan-fit"]], "Changelog": [[7, "changelog"]], " [UNRELEASED] (2024-02-16)": [[7, "release-unreleased-2024-02-16"]], "Improved Documentation": [[7, "improved-documentation"]], "Maintenance": [[7, "maintenance"], [7, "id5"]], "0.1 (2023-12-03)": [[7, "id3"]], "New features": [[7, "new-features"]], "Enhancements": [[7, "enhancements"]], "Initiation (2023-10-28)": [[7, "initiation-2023-10-28"]], "Citing eXSpy": [[8, "citing-exspy"], [10, "citing-exspy"], [11, "citing-exspy"]], "Contributing": [[9, "contributing"]], "Issues": [[9, "issues"]], "Pull Requests": [[9, "pull-requests"]], "Reviewing": [[9, "reviewing"]], "Documentation": [[9, "documentation"]], "Code style": [[9, "code-style"]], "Writing tests": [[9, "writing-tests"]], "Releasing a new version": [[9, "releasing-a-new-version"]], "Welcome to the documentation of eXSpy!": [[10, "welcome-to-the-documentation-of-exspy"], [11, "welcome-to-the-documentation-of-exspy"]], "Learning resources": [[10, "learning-resources"], [11, "learning-resources"]], "Citation in the scientific literature": [[10, "citation-in-the-scientific-literature"], [11, "citation-in-the-scientific-literature"]], "License": [[10, "license"], [11, "license"]], "exspy.components": [[12, "exspy-components"]], "exspy.data": [[13, "exspy-data"]], "Reference": [[14, "reference"], [14, null]], "exspy.material": [[15, "exspy-material"]], "exspy.models": [[16, "exspy-models"]], "exspy.signals": [[17, "exspy-signals"]], "Bibliography": [[19, "bibliography"]], "Dielectric function tools": [[20, "dielectric-function-tools"]], "Number of effective electrons": [[20, "number-of-effective-electrons"]], "Compute the electron energy-loss signal": [[20, "compute-the-electron-energy-loss-signal"]], "Energy-Dispersive X-ray Spectrometry (EDS)": [[21, "energy-dispersive-x-ray-spectrometry-eds"]], "Spectrum loading and parameters": [[21, "spectrum-loading-and-parameters"]], "Loading data": [[21, "loading-data"]], "Microscope and detector parameters": [[21, "microscope-and-detector-parameters"]], "Energy axis": [[21, "energy-axis"]], "Copying spectrum calibration": [[21, "copying-spectrum-calibration"]], "Describing the sample": [[21, "describing-the-sample"]], "Elements": [[21, "elements"]], "X-ray lines": [[21, "x-ray-lines"]], "Elemental database": [[21, "elemental-database"]], "Finding elements from energy": [[21, "finding-elements-from-energy"]], "Plotting": [[21, "plotting"]], "Plotting X-ray lines": [[21, "plotting-x-ray-lines"]], "Getting the intensity of an X-ray line": [[21, "getting-the-intensity-of-an-x-ray-line"]], "Background subtraction": [[21, "background-subtraction"]], "EDS curve fitting": [[21, "eds-curve-fitting"]], "EDS Quantification": [[21, "eds-quantification"]], "Absorption Correction": [[21, "absorption-correction"]], "Utils": [[21, "utils"]], "Mass absorption coefficient database": [[21, "mass-absorption-coefficient-database"]], "Electron and X-ray range": [[21, "electron-and-x-ray-range"]], "Electron Energy Loss Spectroscopy": [[22, "electron-energy-loss-spectroscopy"]], "Tools for EELS data analysis": [[22, "tools-for-eels-data-analysis"]], "Elemental composition of the sample": [[22, "elemental-composition-of-the-sample"]], "Thickness estimation": [[22, "thickness-estimation"]], "Zero-loss peak centre and alignment": [[22, "zero-loss-peak-centre-and-alignment"]], "Deconvolutions": [[22, "deconvolutions"]], "Estimate elastic scattering intensity": [[22, "estimate-elastic-scattering-intensity"]], "Kramers-Kronig Analysis": [[22, "kramers-kronig-analysis"]], "Creating model": [[22, "creating-model"]], "Generalised Oscillator Strengths": [[22, "generalised-oscillator-strengths"]], "Fitting model": [[22, "fitting-model"]], "Fine structure analysis": [[22, "fine-structure-analysis"], [22, "id1"]], "User Guide": [[23, "user-guide"]], "Installation": [[24, "installation"]], "Installation using conda": [[24, "installation-using-conda"]], "1. Creating a conda environment": [[24, "creating-a-conda-environment"]], "2. Installing the package in the new environment": [[24, "installing-the-package-in-the-new-environment"]], "3. Getting Started": [[24, "getting-started"]], "Installation using pip": [[24, "installation-using-pip"]], "Updating the package": [[24, "updating-the-package"]], "eXSpy Metadata Structure": [[25, "exspy-metadata-structure"]], "General": [[25, "general"]], "Sample": [[25, "sample"]], "Signal": [[25, "signal"]], "Acquisition_instrument": [[25, "acquisition-instrument"]], "TEM": [[25, "tem"]], "SEM": [[25, "sem"]], "Stage": [[25, "stage"]], "Detector": [[25, "detector"]], "EELS": [[25, "eels"]], "EDS": [[25, "eds"]]}, "indexentries": {"doublepowerlaw (class in exspy.components)": [[12, "exspy.components.DoublePowerLaw"]], "eelsarctan (class in exspy.components)": [[12, "exspy.components.EELSArctan"]], "eelscledge (class in exspy.components)": [[12, "exspy.components.EELSCLEdge"]], "pesvoigt (class in exspy.components)": [[12, "exspy.components.PESVoigt"]], "see (class in exspy.components)": [[12, "exspy.components.SEE"]], "vignetting (class in exspy.components)": [[12, "exspy.components.Vignetting"]], "volumeplasmondrude (class in exspy.components)": [[12, "exspy.components.VolumePlasmonDrude"]], "as_dictionary() (exspy.components.eelscledge method)": [[12, "exspy.components.EELSCLEdge.as_dictionary"]], "estimate_parameters() (exspy.components.pesvoigt method)": [[12, "exspy.components.PESVoigt.estimate_parameters"]], "exspy.components": [[12, "module-exspy.components"]], "fine_structure_smoothing (exspy.components.eelscledge property)": [[12, "exspy.components.EELSCLEdge.fine_structure_smoothing"]], "fix_fine_structure() (exspy.components.eelscledge method)": [[12, "exspy.components.EELSCLEdge.fix_fine_structure"]], "free_fine_structure() (exspy.components.eelscledge method)": [[12, "exspy.components.EELSCLEdge.free_fine_structure"]], "function() (exspy.components.eelscledge method)": [[12, "exspy.components.EELSCLEdge.function"]], "function_nd() (exspy.components.doublepowerlaw method)": [[12, "exspy.components.DoublePowerLaw.function_nd"]], "get_fine_structure_as_signal1d() (exspy.components.eelscledge method)": [[12, "exspy.components.EELSCLEdge.get_fine_structure_as_signal1D"]], "gui() (exspy.components.eelscledge method)": [[12, "exspy.components.EELSCLEdge.gui"]], "left_cutoff (exspy.components.doublepowerlaw attribute)": [[12, "exspy.components.DoublePowerLaw.left_cutoff"]], "module": [[12, "module-exspy.components"], [13, "module-exspy.data"], [15, "module-exspy.material"], [16, "module-exspy.models"], [17, "module-exspy.signals"]], "set_microscope_parameters() (exspy.components.eelscledge method)": [[12, "exspy.components.EELSCLEdge.set_microscope_parameters"]], "eds_sem_tm002() (in module exspy.data)": [[13, "exspy.data.EDS_SEM_TM002"]], "eds_tem_fept_nanoparticles() (in module exspy.data)": [[13, "exspy.data.EDS_TEM_FePt_nanoparticles"]], "eels_mnfe() (in module exspy.data)": [[13, "exspy.data.EELS_MnFe"]], "eels_low_loss() (in module exspy.data)": [[13, "exspy.data.EELS_low_loss"]], "eelsdb() (in module exspy.data)": [[13, "exspy.data.eelsdb"]], "exspy.data": [[13, "module-exspy.data"]], "atomic_to_weight() (in module exspy.material)": [[15, "exspy.material.atomic_to_weight"]], "density_of_mixture() (in module exspy.material)": [[15, "exspy.material.density_of_mixture"]], "exspy.material": [[15, "module-exspy.material"]], "mass_absorption_coefficient() (in module exspy.material)": [[15, "exspy.material.mass_absorption_coefficient"]], "mass_absorption_mixture() (in module exspy.material)": [[15, "exspy.material.mass_absorption_mixture"]], "weight_to_atomic() (in module exspy.material)": [[15, "exspy.material.weight_to_atomic"]], "edsmodel (class in exspy.models)": [[16, "exspy.models.EDSModel"]], "edssemmodel (class in exspy.models)": [[16, "exspy.models.EDSSEMModel"]], "edstemmodel (class in exspy.models)": [[16, "exspy.models.EDSTEMModel"]], "eelsmodel (class in exspy.models)": [[16, "exspy.models.EELSModel"]], "add_family_lines() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.add_family_lines"]], "add_polynomial_background() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.add_polynomial_background"]], "append() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.append"]], "as_dictionary() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.as_dictionary"]], "calibrate_energy_axis() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.calibrate_energy_axis"]], "calibrate_xray_lines() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.calibrate_xray_lines"]], "disable_background() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.disable_background"]], "disable_edges() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.disable_edges"]], "disable_fine_structure() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.disable_fine_structure"]], "disable_free_onset_energy() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.disable_free_onset_energy"]], "disable_xray_lines() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.disable_xray_lines"]], "enable_background() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.enable_background"]], "enable_edges() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.enable_edges"]], "enable_fine_structure() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.enable_fine_structure"]], "enable_free_onset_energy() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.enable_free_onset_energy"]], "enable_xray_lines() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.enable_xray_lines"]], "exspy.models": [[16, "module-exspy.models"]], "fit() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.fit"]], "fit_background() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.fit_background"]], "fit_background() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.fit_background"]], "fix_background() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.fix_background"]], "fix_edges() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.fix_edges"]], "fix_fine_structure() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.fix_fine_structure"]], "fix_sub_xray_lines_weight() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.fix_sub_xray_lines_weight"]], "fix_xray_lines_energy() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.fix_xray_lines_energy"]], "fix_xray_lines_width() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.fix_xray_lines_width"]], "free_background() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.free_background"]], "free_edges() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.free_edges"]], "free_fine_structure() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.free_fine_structure"]], "free_sub_xray_lines_weight() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.free_sub_xray_lines_weight"]], "free_xray_lines_energy() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.free_xray_lines_energy"]], "free_xray_lines_width() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.free_xray_lines_width"]], "get_lines_intensity() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.get_lines_intensity"]], "quantify() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.quantify"]], "remove() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.remove"]], "remove() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.remove"]], "remove_fine_structure_data() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.remove_fine_structure_data"]], "resolve_fine_structure() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.resolve_fine_structure"]], "resume_auto_fine_structure_width() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.resume_auto_fine_structure_width"]], "set_all_edges_intensities_positive() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.set_all_edges_intensities_positive"]], "set_convolution_axis() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.set_convolution_axis"]], "signal (exspy.models.eelsmodel property)": [[16, "exspy.models.EELSModel.signal"]], "smart_fit() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.smart_fit"]], "suspend_auto_fine_structure_width() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.suspend_auto_fine_structure_width"]], "two_area_background_estimation() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.two_area_background_estimation"]], "unset_all_edges_intensities_positive() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.unset_all_edges_intensities_positive"]], "cl_get_mass_thickness() (exspy.signals.edstemspectrum static method)": [[17, "exspy.signals.EDSTEMSpectrum.CL_get_mass_thickness"]], "dielectricfunction (class in exspy.signals)": [[17, "exspy.signals.DielectricFunction"]], "edssemspectrum (class in exspy.signals)": [[17, "exspy.signals.EDSSEMSpectrum"]], "edsspectrum (class in exspy.signals)": [[17, "exspy.signals.EDSSpectrum"]], "edstemspectrum (class in exspy.signals)": [[17, "exspy.signals.EDSTEMSpectrum"]], "eelsspectrum (class in exspy.signals)": [[17, "exspy.signals.EELSSpectrum"]], "lazydielectricfunction (class in exspy.signals)": [[17, "exspy.signals.LazyDielectricFunction"]], "lazyedssemspectrum (class in exspy.signals)": [[17, "exspy.signals.LazyEDSSEMSpectrum"]], "lazyedsspectrum (class in exspy.signals)": [[17, "exspy.signals.LazyEDSSpectrum"]], "lazyedstemspectrum (class in exspy.signals)": [[17, "exspy.signals.LazyEDSTEMSpectrum"]], "lazyeelsspectrum (class in exspy.signals)": [[17, "exspy.signals.LazyEELSSpectrum"]], "add_elements() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.add_elements"]], "add_elements() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.add_elements"]], "add_lines() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.add_lines"]], "add_xray_lines_markers() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.add_xray_lines_markers"]], "align_zero_loss_peak() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.align_zero_loss_peak"]], "create_model() (exspy.signals.edssemspectrum method)": [[17, "exspy.signals.EDSSEMSpectrum.create_model"]], "create_model() (exspy.signals.edstemspectrum method)": [[17, "exspy.signals.EDSTEMSpectrum.create_model"]], "create_model() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.create_model"]], "decomposition() (exspy.signals.edstemspectrum method)": [[17, "exspy.signals.EDSTEMSpectrum.decomposition"]], "edges_at_energy() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.edges_at_energy"]], "estimate_background_windows() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.estimate_background_windows"]], "estimate_elastic_scattering_intensity() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.estimate_elastic_scattering_intensity"]], "estimate_elastic_scattering_threshold() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.estimate_elastic_scattering_threshold"]], "estimate_integration_windows() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.estimate_integration_windows"]], "estimate_thickness() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.estimate_thickness"]], "estimate_zero_loss_peak_centre() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.estimate_zero_loss_peak_centre"]], "exspy.signals": [[17, "module-exspy.signals"]], "fourier_log_deconvolution() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.fourier_log_deconvolution"]], "fourier_ratio_deconvolution() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.fourier_ratio_deconvolution"]], "generate_subshells() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.generate_subshells"]], "get_calibration_from() (exspy.signals.edssemspectrum method)": [[17, "exspy.signals.EDSSEMSpectrum.get_calibration_from"]], "get_calibration_from() (exspy.signals.edstemspectrum method)": [[17, "exspy.signals.EDSTEMSpectrum.get_calibration_from"]], "get_electron_energy_loss_spectrum() (exspy.signals.dielectricfunction method)": [[17, "exspy.signals.DielectricFunction.get_electron_energy_loss_spectrum"]], "get_lines_intensity() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.get_lines_intensity"]], "get_number_of_effective_electrons() (exspy.signals.dielectricfunction method)": [[17, "exspy.signals.DielectricFunction.get_number_of_effective_electrons"]], "get_probe_area() (exspy.signals.edstemspectrum method)": [[17, "exspy.signals.EDSTEMSpectrum.get_probe_area"]], "get_take_off_angle() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.get_take_off_angle"]], "get_zero_loss_peak_mask() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.get_zero_loss_peak_mask"]], "kramers_kronig_analysis() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.kramers_kronig_analysis"]], "plot() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.plot"]], "plot() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.plot"]], "power_law_extrapolation() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.power_law_extrapolation"]], "print_edges_near_energy() (exspy.signals.eelsspectrum static method)": [[17, "exspy.signals.EELSSpectrum.print_edges_near_energy"]], "quantification() (exspy.signals.edstemspectrum method)": [[17, "exspy.signals.EDSTEMSpectrum.quantification"]], "rebin() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.rebin"]], "rebin() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.rebin"]], "remove_xray_lines_markers() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.remove_xray_lines_markers"]], "richardson_lucy_deconvolution() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.richardson_lucy_deconvolution"]], "set_elements() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.set_elements"]], "set_lines() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.set_lines"]], "set_microscope_parameters() (exspy.signals.edssemspectrum method)": [[17, "exspy.signals.EDSSEMSpectrum.set_microscope_parameters"]], "set_microscope_parameters() (exspy.signals.edstemspectrum method)": [[17, "exspy.signals.EDSTEMSpectrum.set_microscope_parameters"]], "set_microscope_parameters() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.set_microscope_parameters"]], "spikes_diagnosis() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.spikes_diagnosis"]], "spikes_removal_tool() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.spikes_removal_tool"]], "sum() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.sum"]], "vacuum_mask() (exspy.signals.edstemspectrum method)": [[17, "exspy.signals.EDSTEMSpectrum.vacuum_mask"]], "vacuum_mask() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.vacuum_mask"]]}})
\ No newline at end of file
+Search.setIndex({"docnames": ["auto_examples/index", "auto_examples/model_fitting/EELS_curve_fitting", "auto_examples/model_fitting/index", "auto_examples/model_fitting/plot_residual", "auto_examples/model_fitting/sg_execution_times", "auto_examples/model_fitting/simple_arctan_fit", "auto_examples/sg_execution_times", "changes", "citing", "contributing", "index", "intro", "reference/components", "reference/data", "reference/index", "reference/material", "reference/models", "reference/signals", "sg_execution_times", "user_guide/bibliography", "user_guide/dielectric_function", "user_guide/eds", "user_guide/eels", "user_guide/index", "user_guide/install", "user_guide/metadata_structure"], "filenames": ["auto_examples/index.rst", "auto_examples/model_fitting/EELS_curve_fitting.rst", "auto_examples/model_fitting/index.rst", "auto_examples/model_fitting/plot_residual.rst", "auto_examples/model_fitting/sg_execution_times.rst", "auto_examples/model_fitting/simple_arctan_fit.rst", "auto_examples/sg_execution_times.rst", "changes.rst", "citing.rst", "contributing.rst", "index.rst", "intro.rst", "reference/components.rst", "reference/data.rst", "reference/index.rst", "reference/material.rst", "reference/models.rst", "reference/signals.rst", "sg_execution_times.rst", "user_guide/bibliography.rst", "user_guide/dielectric_function.rst", "user_guide/eds.rst", "user_guide/eels.rst", "user_guide/index.rst", "user_guide/install.rst", "user_guide/metadata_structure.rst"], "titles": ["Gallery of Examples", "EELS curve fitting", "Model fitting", "Plot Residual", "Computation times", "Simple arctan fit", "Computation times", "Changelog", "Citing eXSpy", "Contributing", "Welcome to the documentation of eXSpy!", "Welcome to the documentation of eXSpy!", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.components</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.data</span></code>", "Reference", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.material</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.models</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">exspy.signals</span></code>", "Computation times", "Bibliography", "Dielectric function tools", "Energy-Dispersive X-ray Spectrometry (EDS)", "Electron Energy Loss Spectroscopy", "User Guide", "Installation", "eXSpy Metadata Structure"], "terms": {"below": [0, 2, 8, 10, 11, 12, 17, 22, 24], "i": [0, 2, 7, 8, 9, 10, 11, 12, 13, 15, 16, 17, 20, 21, 22, 24, 25], "plot": [0, 1, 2, 4, 5, 13, 16, 17, 18, 22, 23], "residu": [0, 2, 4, 18], "eel": [0, 2, 4, 7, 10, 11, 12, 13, 16, 17, 18, 23], "curv": [0, 2, 4, 18, 23], "simpl": [0, 2, 4, 10, 11, 18], "arctan": [0, 2, 4, 12, 18], "download": [0, 1, 3, 5, 7, 13, 21, 22], "all": [0, 3, 9, 12, 13, 16, 17, 18, 21, 22, 24, 25], "python": [0, 1, 3, 5, 7, 9, 10, 11, 24], "sourc": [0, 1, 3, 5, 9, 10, 11, 21], "code": [0, 1, 3, 5, 7, 17, 21], "auto_examples_python": 0, "zip": [0, 21], "jupyt": [0, 1, 3, 5, 9, 10, 11, 17, 24], "notebook": [0, 1, 3, 5, 9, 10, 11, 17, 24], "auto_examples_jupyt": 0, "gener": [0, 1, 3, 5, 9, 10, 11, 13, 16, 17, 22, 23], "sphinx": [0, 1, 3, 5, 9], "go": [1, 3, 5, 7, 12, 16, 17, 22], "end": [1, 3, 5, 12, 17], "full": [1, 3, 5, 12, 17, 25], "exampl": [1, 2, 3, 4, 5, 6, 9, 10, 11, 12, 13, 15, 16, 17, 18, 21, 22], "perform": [1, 10, 11, 16, 17, 22], "an": [1, 3, 5, 8, 10, 11, 12, 13, 15, 16, 17, 22, 23, 24, 25], "spectrum": [1, 5, 12, 13, 16, 17, 20, 22, 23, 25], "result": [1, 5, 9, 13, 16, 17, 21, 22], "save": [1, 12, 16, 22], "png": 1, "file": [1, 3, 4, 6, 7, 16, 17, 18, 21, 22], "0": [1, 3, 4, 5, 6, 12, 16, 17, 18, 19, 20, 21, 22], "00": [1, 3, 4, 6, 17, 18], "42": [1, 21], "3m": 1, "b": [1, 3, 12, 17, 19, 21, 22, 25], "": [1, 3, 5, 12, 13, 15, 16, 17, 19, 20, 21, 22, 25], "12": [1, 15], "3k": 1, "06": 1, "26": [1, 21], "109kb": 1, "44": 1, "0k": 1, "03": 1, "20": [1, 12, 17, 22], "211kb": 1, "90": [1, 25], "1k": 1, "02": 1, "301kb": 1, "203k": 1, "01": [1, 12, 16, 17, 19, 21], "13": [1, 7, 21], "575kb": 1, "1": [1, 5, 12, 13, 15, 16, 17, 19, 20, 21, 22], "414k": 1, "40": [1, 22], "04mb": 1, "2": [1, 3, 12, 15, 16, 17, 20, 21, 22, 25], "855k": 1, "01mb": 1, "4": [1, 7, 12, 13, 16, 17, 19, 21, 22], "76m": 1, "10": [1, 3, 12, 13, 15, 16, 17, 19, 21, 22], "3": [1, 3, 4, 7, 10, 11, 12, 13, 16, 17, 18, 19, 21, 22], "96mb": 1, "8": [1, 3, 15, 17, 19, 21], "54m": 1, "05": [1, 12], "7": [1, 7, 21, 22], "71mb": 1, "14": [1, 7], "5": [1, 12, 13, 17, 21, 22], "78m": 1, "11": [1, 3, 15], "5mb": 1, "19": [1, 12], "86m": 1, "6mb": 1, "24": 1, "1m": 1, "15": [1, 12, 17, 19, 21], "4mb": 1, "29": 1, "2m": 1, "16": 1, "34": 1, "4m": 1, "17": 1, "39": 1, "6m": 1, "9mb": 1, "18": 1, "8m": 1, "50": [1, 15, 21], "9m": 1, "55": [1, 21, 22], "23": 1, "60": [1, 17], "25": 1, "0mb": 1, "65": [1, 19], "27": [1, 7], "5m": 1, "1mb": [1, 21], "70": [1, 21], "3mb": 1, "76": 1, "32": [1, 12, 17], "0m": 1, "81": [1, 19], "86": 1, "36": [1, 17], "91": 1, "38": [1, 21], "7m": 1, "97": 1, "7mb": 1, "100": [1, 3, 15, 16, 17, 21], "278gb": 1, "import": [1, 3, 5, 9, 13, 17, 21, 22], "hyperspi": [1, 3, 5, 7, 8, 9, 10, 11, 12, 17, 20, 21, 22, 24, 25], "api": [1, 3, 5, 7, 9, 10, 11, 17, 20, 21, 22], "h": [1, 3, 5, 12, 15, 16, 17, 21, 22], "load": [1, 13, 22, 23, 24], "coreloss_spectrum": 1, "msa": [1, 21], "signal_typ": [1, 21, 25], "ll": [1, 9, 16, 17, 21, 22], "lowloss_spectrum": 1, "add_el": [1, 16, 17, 21, 22], "mn": [1, 13, 17, 21, 25], "o": [1, 9, 17, 22], "set_microscope_paramet": [1, 12, 17, 21, 22], "beam_energi": [1, 17, 21, 22, 25], "300": [1, 22], "convergence_angl": [1, 17, 22, 25], "6": [1, 13, 15, 16, 17, 21, 22], "collection_angl": [1, 17, 22, 25], "m": [1, 3, 5, 16, 17, 19, 21, 22], "create_model": [1, 3, 5, 16, 17, 21, 22], "low_loss": [1, 13, 16, 17], "enable_fine_structur": [1, 16, 22], "multifit": [1, 3, 16, 22], "kind": [1, 16, 22], "smart": [1, 16, 22], "total": [1, 3, 4, 5, 6, 15, 17, 18], "run": [1, 3, 5, 17, 21, 24], "time": [1, 3, 5, 7, 16, 17, 21, 25], "script": [1, 3, 5], "minut": [1, 3, 5], "9": [1, 17, 21, 22], "033": [1, 4, 18], "second": [1, 3, 5, 12, 17, 19, 21, 25], "eels_curve_fit": [1, 4, 18], "ipynb": [1, 3, 5], "py": [1, 3, 4, 5, 18], "galleri": [1, 2, 3, 5, 10, 11, 18], "fit": [3, 4, 7, 10, 11, 12, 16, 17, 18, 23], "affin": 3, "function": [3, 5, 7, 9, 10, 11, 12, 16, 17, 21, 22, 23], "numpi": [3, 5, 9, 12, 17, 21], "np": [3, 5, 12, 16, 17], "creat": [3, 5, 16, 17, 21], "signal": [3, 5, 12, 13, 14, 15, 16, 19, 21, 22, 23], "data": [3, 5, 8, 10, 11, 12, 14, 16, 17, 19, 23, 25], "arang": [3, 5, 12, 17], "1000": [3, 17], "dtype": [3, 17], "int64": 3, "reshap": [3, 12], "signal1d": [3, 5, 12, 16, 17, 21, 22], "add": [3, 5, 7, 13, 16, 17, 21, 22, 25], "nois": [3, 13, 17, 22], "add_poissonian_nois": [3, 17], "random_st": [3, 13], "model": [3, 5, 7, 12, 14, 17, 21, 25], "line": [3, 9, 12, 15, 16, 17, 22, 23, 25], "components1d": [3, 5, 7, 12, 16, 22], "express": [3, 12], "x": [3, 5, 7, 10, 11, 12, 13, 15, 16, 17, 19, 23, 25], "name": [3, 5, 10, 11, 12, 15, 16, 17, 21, 22], "append": [3, 5, 16], "navig": [3, 12, 13, 17, 21], "posit": [3, 12, 16, 17, 21, 22, 25], "except": [3, 16, 17, 21, 22], "ignor": [3, 16, 17], "tqdm": 3, "__del__": 3, "0x7f43efe82840": 3, "traceback": [3, 9], "most": [3, 17, 21, 22], "recent": 3, "call": [3, 9, 16, 17, 21, 22], "last": [3, 17], "opt": 3, "hostedtoolcach": 3, "x64": 3, "lib": 3, "python3": 3, "site": 3, "packag": [3, 7, 9, 10, 11, 23], "std": [3, 5, 16, 17], "1148": 3, "self": [3, 16, 17], "close": [3, 12, 17], "279": 3, "disp": 3, "bar_styl": 3, "danger": 3, "check_delai": 3, "fals": [3, 5, 12, 13, 16, 17], "attributeerror": [3, 17], "tqdm_notebook": 3, "object": [3, 12, 16, 17, 21, 25], "ha": [3, 8, 10, 11, 16, 17, 22, 25], "attribut": [3, 12, 16, 17, 21, 22, 25], "1424": 3, "26it": 3, "plot_residu": [3, 4, 18], "true": [3, 5, 7, 12, 13, 16, 17, 21, 22], "sphinx_gallery_thumbnail_numb": 3, "598": [3, 4, 18], "09": [4, 18], "993": [4, 18], "execut": [4, 6, 16, 18, 22], "from": [4, 6, 7, 12, 13, 15, 16, 17, 18, 19, 20, 22, 24, 25], "auto_exampl": [4, 6], "model_fit": [4, 18], "mem": [4, 6, 18], "mb": [4, 6, 18], "simple_arctan_fit": [4, 5, 18], "362": [4, 5, 18], "model1d": [5, 16], "currentcomponentvalu": 5, "activ": [5, 16, 22, 24], "paramet": [5, 10, 11, 12, 13, 15, 16, 17, 22, 23, 25], "free": [5, 10, 11, 12, 16, 17, 22], "valu": [5, 9, 12, 13, 16, 17, 21, 22, 25], "min": [5, 13, 17], "max": [5, 13, 17], "linear": [5, 12, 17], "A": [5, 6, 12, 13, 15, 16, 17, 19, 21, 22, 25], "00157171": 5, "00212899": 5, "none": [5, 12, 13, 16, 17], "k": [5, 12, 13, 15, 19, 21, 22, 25], "01792870": 5, "08682222": 5, "x0": [5, 12], "03878109": 5, "07831814": 5, "make": [5, 9, 20, 22], "500": 5, "axes_manag": [5, 12, 17, 21], "offset": [5, 12, 13, 16, 17, 21], "unit": [5, 17, 20, 21, 25], "metadata": [5, 7, 10, 11, 15, 16, 17, 21, 22, 23], "titl": [5, 13, 17, 21, 22], "set_signal_origin": 5, "simul": [5, 13, 16, 17, 22], "add_gaussian_nois": 5, "compon": [5, 7, 14, 15, 16, 17, 21, 22], "us": [5, 7, 8, 9, 10, 11, 12, 13, 15, 16, 17, 19, 20, 21, 22, 23, 25], "arctan_compon": 5, "print": [5, 16, 17, 22], "print_current_valu": [5, 21], "000": 6, "n": [6, 17, 22, 24, 25], "entri": 7, "develop": [7, 9, 24], "version": [7, 8, 10, 11, 15, 22, 24], "ar": [7, 8, 9, 10, 11, 12, 13, 16, 17, 20, 21, 22, 24, 25], "avail": [7, 12, 16, 17, 21, 22], "http": [7, 12, 15, 19, 21], "exspi": [7, 9, 14, 21, 22, 23, 24], "readthedoc": [7, 12], "io": [7, 12], "en": [7, 15], "latest": 7, "chang": [7, 9, 16, 17, 19, 21, 22], "html": [7, 12, 17], "logo": 7, "adapt": [7, 12], "spell": 7, "capit": [7, 25], "22": [7, 19], "ruff": 7, "lint": 7, "format": [7, 17, 21, 22], "remov": [7, 16, 17, 22], "redund": 7, "github": [7, 9, 24], "workflow": [7, 9], "favour": 7, "pre": [7, 17], "commit": 7, "support": [7, 12, 16, 17, 22], "tabul": [7, 19, 22], "generalis": 7, "oscil": 7, "strength": 7, "gosh": [7, 12, 16, 17, 22], "open": [7, 10, 11, 17, 24], "By": [7, 17, 21, 22, 25], "default": [7, 12, 13, 16, 17, 21, 22, 25], "freeli": [7, 22], "usabl": [7, 22], "dataset": [7, 12, 17, 21, 22], "doi": [7, 8, 10, 11, 12, 15, 16, 17, 19, 22], "5281": [7, 16, 17, 22], "zenodo": [7, 16, 17, 22], "7645765": [7, 16, 17, 22], "3082": 7, "fine": [7, 12, 16, 21], "structur": [7, 9, 12, 16, 17, 21, 23], "e": [7, 10, 11, 12, 15, 17, 19, 20, 21, 22, 25], "g": [7, 10, 11, 12, 15, 17, 21, 22, 25], "gaussian": [7, 12, 16, 17, 21, 22], "3206": 7, "enabl": [7, 16, 17, 21, 22], "signal_rang": [7, 17, 22], "argument": [7, 12, 16, 17, 21, 22], "when": [7, 9, 17, 21, 22, 25], "subpixel": [7, 17, 22], "align_zero_loss_peak": [7, 17, 22], "towncrier": 7, "manag": 7, "releas": [7, 8, 24], "note": [7, 12, 13, 16, 17, 20, 21, 22, 25], "set": [7, 12, 13, 16, 17, 20, 21, 22], "dev": 7, "reusabl": 7, "organis": 7, "doc": [7, 9], "consolid": 7, "pyproject": 7, "toml": 7, "setuptools_scm": 7, "holospi": [7, 8], "build": [7, 16], "test": [7, 12, 17, 21], "wa": [7, 12, 21], "split": [7, 12], "out": [7, 9, 10, 11, 17, 21, 22], "repositori": [7, 9, 24], "oct": 7, "The": [7, 8, 9, 10, 11, 12, 13, 15, 16, 17, 19, 20, 21, 22, 25], "rai": [7, 10, 11, 15, 16, 17, 19, 23, 25], "energi": [7, 10, 11, 12, 13, 15, 16, 17, 19, 23, 25], "dispers": [7, 10, 11, 17, 19, 23, 25], "spectroscopi": [7, 10, 11, 12, 17, 19, 23, 25], "ed": [7, 10, 11, 13, 16, 17, 19, 23], "electron": [7, 10, 11, 12, 13, 17, 19, 23, 25], "loss": [7, 10, 11, 12, 13, 16, 17, 19, 23, 25], "so": [7, 17, 21, 22], "far": [7, 22], "were": 7, "move": 7, "maintain": [8, 9, 10, 11], "commun": [8, 9, 10, 11], "_": 8, "If": [8, 9, 10, 11, 12, 13, 15, 16, 17, 21, 22, 24, 25], "been": [8, 10, 11, 12, 17], "signific": [8, 9, 10, 11], "project": [8, 9, 10, 11, 17], "lead": [8, 10, 11, 17], "academ": [8, 10, 11], "public": [8, 10, 11], "pleas": [8, 9, 10, 11, 17, 21, 24], "acknowledg": [8, 10, 11], "fact": [8, 10, 11], "badg": [8, 10, 11], "concept": [8, 10, 11], "can": [8, 9, 10, 11, 16, 17, 20, 21, 22, 24, 25], "without": [8, 10, 11, 12, 21, 22], "refer": [8, 9, 10, 11, 12, 16, 17, 19, 21, 24, 25], "specif": [8, 10, 11, 13, 17, 21, 22, 25], "you": [8, 9, 10, 11, 16, 17, 21, 22, 24], "becaus": [8, 10, 11, 17, 22], "have": [8, 10, 11, 12, 17, 21, 22, 24], "process": [8, 9, 10, 11, 16, 25], "emploi": [8, 10, 11], "find": [8, 10, 11, 17, 24], "click": [8, 10, 11, 22], "To": [8, 17, 20, 21, 22, 24], "updat": [8, 16, 22, 23], "after": [8, 16, 17, 21, 22], "first": [8, 15, 16, 17, 21, 22, 24, 25], "meant": 9, "we": [9, 10, 11, 21, 22, 24], "welcom": 9, "form": [9, 10, 11, 15, 16, 17, 19], "bug": 9, "report": 9, "featur": [9, 17, 22], "more": [9, 10, 11, 12, 13, 16, 17, 21, 22, 24], "In": [9, 17, 21, 22, 24], "follow": [9, 12, 16, 17, 21, 22, 24, 25], "some": [9, 13, 17, 22], "resourc": 9, "help": [9, 10, 11, 17, 22], "tracker": 9, "propos": 9, "give": [9, 17, 20, 22], "minim": [9, 16], "demonstr": 9, "copi": [9, 12, 16, 17], "past": 9, "error": [9, 13, 21], "want": [9, 22, 24], "send": 9, "u": 9, "small": [9, 17], "fix": [9, 12, 16, 21], "correct": [9, 12, 16, 17, 19, 22], "user": [9, 10, 11, 12, 16, 17, 21, 24], "guid": [9, 10, 11, 16, 17, 24], "typic": [9, 17, 21], "good": [9, 17, 22], "start": [9, 10, 11, 17], "point": [9, 16, 17, 22], "But": 9, "don": [9, 17], "t": [9, 15, 17, 19, 20], "hesit": 9, "also": [9, 13, 16, 17, 21, 22, 24, 25], "need": [9, 16, 17, 21, 22, 24], "get": [9, 10, 11, 13, 22, 23], "readi": 9, "common": 9, "standard": [9, 13, 16, 17, 19, 21, 22], "order": [9, 13, 16, 17, 21, 22], "detail": [9, 10, 11, 12, 16, 17, 19, 21, 22, 24, 25], "guidelin": [9, 10, 11], "kikuchipi": 9, "contributor": 9, "anoth": [9, 17, 21, 22, 25], "extens": [9, 10, 11], "valuabl": 9, "provid": [9, 10, 11, 13, 16, 17, 21, 22], "As": [9, 22], "qualiti": 9, "assur": 9, "improv": [9, 17, 21, 22], "ensur": 9, "thoroughli": 9, "least": [9, 12, 16], "one": [9, 12, 13, 16, 17, 21, 22, 24], "other": [9, 16, 17, 22, 24], "member": 9, "team": 9, "befor": [9, 10, 11, 17, 21, 22], "being": [9, 17, 21], "merg": 9, "consist": [9, 13, 17, 21, 22], "three": [9, 17, 19, 21, 22], "element": [9, 12, 13, 15, 16, 17, 25], "docstr": [9, 16, 17], "individu": [9, 16], "method": [9, 12, 16, 17, 19, 20, 21, 22, 25], "written": 9, "host": 9, "read": [9, 10, 11, 16, 17, 25], "part": [9, 16, 19, 22], "demo": 9, "tutori": [9, 10, 11, 21], "alwai": [9, 17], "wai": [9, 10, 11, 21], "learn": [9, 17, 19], "through": [9, 17, 21], "respect": [9, 13, 25], "black": [9, 17], "For": [9, 10, 11, 12, 16, 17, 21, 22], "numpydoc": 9, "should": [9, 16, 17, 21, 22, 25], "block": 9, "blank": 9, "between": [9, 12, 15, 16, 17, 21, 22], "them": [9, 16, 17, 21, 22], "librari": [9, 10, 11, 24], "like": [9, 16, 17], "type": [9, 12, 13, 15, 16, 17, 20, 21, 22, 25], "third": 9, "parti": 9, "final": [9, 17, 21], "via": [9, 17, 19], "pytest": 9, "framework": 9, "resid": 9, "directori": 9, "short": [9, 10, 11], "compar": 9, "output": [9, 17, 21, 22], "known": [9, 16, 17, 22], "answer": 9, "further": [9, 10, 11, 16, 21], "inform": [9, 10, 11, 12, 16, 17, 21, 22, 25], "semant": 9, "number": [9, 10, 11, 12, 13, 17, 21, 22, 23, 25], "therefor": [9, 17, 20, 21, 22], "major": [9, 17, 22], "minor": [9, 17, 22], "patch": 9, "each": [9, 13, 15, 16, 17, 21], "depend": [9, 16, 17, 22, 24], "accord": [9, 12, 17], "increas": [9, 10, 11, 17, 21], "incompat": 9, "ad": [9, 13, 16, 17, 21, 22], "backward": 9, "compat": 9, "manner": [9, 16, 17, 22], "push": 9, "pypi": [9, 24], "conda": [9, 23], "forg": [9, 24], "extend": [10, 11, 16, 21, 25], "multi": [10, 11, 16, 21], "dimension": [10, 11, 19, 21], "analysi": [10, 11, 12, 17, 19, 21, 23], "It": [10, 11, 12, 16, 17, 21, 22], "aim": [10, 11], "check": [10, 11, 24], "instal": [10, 11, 23], "section": [10, 11, 17, 19, 21, 22, 24, 25], "includ": [10, 11, 12, 16, 17, 21, 22, 24], "how": [10, 11], "thi": [10, 11, 12, 13, 16, 17, 21, 22, 25], "everyon": [10, 11], "contribut": [10, 11, 17], "our": [10, 11], "see": [10, 11, 12, 13, 14, 15, 16, 17, 20, 21, 22, 24, 25], "new": [10, 11, 16, 17, 19, 22], "ecosystem": [10, 11], "introduct": [10, 11], "basic": [10, 11, 22], "usag": [10, 11, 17], "depth": [10, 11], "kei": [10, 11, 12, 13, 16, 17], "along": [10, 11, 16, 17, 21, 22, 25], "background": [10, 11, 12, 13, 16, 17, 22], "explan": [10, 11], "applic": [10, 11, 21], "progam": [10, 11], "interfac": [10, 11, 12, 17], "which": [10, 11, 16, 17, 21, 22, 25], "describ": [10, 11, 17, 22, 23, 25], "work": [10, 11, 17, 24, 25], "illustr": [10, 11], "task": [10, 11, 22], "whole": [10, 11, 17, 22], "its": [10, 11, 15, 16, 17, 20, 22, 25], "There": [10, 11, 22], "mani": [10, 11, 17, 22], "given": [10, 11, 13, 15, 16, 17, 20, 21, 22, 25], "articl": [10, 11], "do": [10, 11, 17, 24], "list": [10, 11, 12, 13, 15, 16, 17, 21, 22, 25], "up": [10, 11, 16, 17, 21, 22], "date": [10, 11], "search": [10, 11, 13, 17, 21, 22, 25], "databas": [10, 11, 13, 15, 22], "googl": [10, 11], "scholar": [10, 11], "publish": [10, 11], "2012": [10, 11], "mai": [10, 11, 17, 21], "mention": [10, 11], "under": [10, 11, 16, 21], "old": [10, 11, 17], "eelslab": [10, 11], "softwar": [10, 11, 17, 21], "redistribut": [10, 11], "modifi": [10, 11, 17], "term": [10, 11], "gnu": [10, 11], "gpl": [10, 11], "foundat": [10, 11], "either": [10, 11, 17, 21, 25], "your": [10, 11, 16], "option": [10, 11, 12, 13, 16, 17, 21, 22, 24], "ani": [10, 11, 12, 13, 16, 17, 21, 22, 25], "later": [10, 11], "distribut": [10, 11, 12, 16, 17, 24], "hope": [10, 11], "warranti": [10, 11], "even": [10, 11], "impli": [10, 11], "merchant": [10, 11], "particular": [10, 11, 21], "purpos": [10, 11, 17, 22], "class": [12, 13, 16, 17, 20, 21, 22, 25], "doublepowerlaw": [12, 14], "1e": 12, "r": [12, 15, 17, 19], "origin": [12, 16, 17], "shift": [12, 16, 17], "ratio": [12, 16, 17, 22], "left_cutoff": 12, "modul": [12, 17], "numexpr": 12, "compute_gradi": 12, "kwarg": [12, 16, 17], "base": [12, 13, 16, 17, 22, 24], "doubl": 12, "power": [12, 16, 17], "law": [12, 16, 17], "spectra": [12, 13, 17, 21, 22, 25], "f": [12, 17, 19, 20], "cdot": 12, "s_r": 12, "x_0": 12, "x_": 12, "variabl": 12, "float": [12, 13, 15, 16, 17, 21, 22, 25], "height": [12, 16, 21, 22], "coeffici": [12, 15, 17, 19], "locat": [12, 16, 17, 22], "two": [12, 16, 17, 20, 21, 22], "extra": [12, 16, 17, 25], "keyword": [12, 16, 17, 22], "pass": [12, 16, 17], "return": [12, 13, 15, 16, 17, 21, 22], "parameter_name_list": 12, "linear_parameter_list": 12, "function_nd": 12, "axi": [12, 16, 17, 22, 25], "arrai": [12, 15, 17, 21], "contain": [12, 13, 16, 17, 21, 22, 25], "indic": [12, 17], "enough": 12, "memori": [12, 17], "quickli": 12, "obtain": [12, 16, 17, 21, 22], "iter": [12, 16, 17, 21, 22], "over": [12, 17, 22], "ax": [12, 17, 21], "eelsarctan": [12, 14], "scipi": [12, 16, 17], "minimum": [12, 13, 16, 17, 22], "zero": [12, 13, 17, 20, 25], "left": [12, 16, 17, 20, 21], "frac": [12, 20], "pi": [12, 20], "right": [12, 16, 17, 20, 21], "amplitud": 12, "lim_": 12, "infti": 12, "2a": 12, "slope": 12, "steep": 12, "step": [12, 17, 21, 24], "larger": [12, 17, 21], "sharper": 12, "center": [12, 17, 21], "eelscledg": [12, 14, 16, 22], "element_subshel": 12, "gos_file_path": [12, 16, 17, 22], "as_dictionari": [12, 16, 17], "fullcopi": [12, 16], "dictionari": [12, 16, 17], "convent": [12, 25], "export_to_dictionari": [12, 16], "bool": [12, 13, 16, 17], "store": [12, 16, 17, 21, 22, 25], "found": [12, 16, 17, 21, 25], "pickl": [12, 16], "convert": [12, 15, 16, 17, 20], "dic": 12, "field": [12, 16, 25], "per": [12, 16, 17, 20, 21], "_whitelist": [12, 16], "dict": [12, 16, 17], "properti": [12, 16, 20, 21, 22], "fine_structure_smooth": [12, 22], "control": [12, 16, 22], "level": 12, "smooth": [12, 17, 22], "must": [12, 13, 17, 21, 22], "real": [12, 17, 22], "higher": [12, 21], "fix_fine_structur": [12, 16, 22], "spline": [12, 22], "free_fine_structur": [12, 16, 22], "onli": [12, 15, 16, 17, 21, 22, 24, 25], "previous": [12, 17, 21], "fine_structure_spline_act": [12, 22], "count": [12, 17], "barn": [12, 21], "get_fine_structure_as_signal1d": 12, "multipl": [12, 16, 17, 21, 22], "scatter": [12, 15, 16, 17, 19, 20], "convolv": [12, 16, 17, 22], "low": [12, 13, 16, 17, 22], "gui": [12, 21], "displai": [12, 13, 17, 21, 22], "toolkit": [12, 17], "interact": [12, 15, 17, 22], "widget": [12, 17], "usual": [12, 16, 17, 21, 22], "customis": [12, 17], "str": [12, 15, 16, 17, 25], "string": [12, 13, 16, 17, 25], "select": [12, 16, 17, 21, 22], "inter": [12, 17], "e0": 12, "alpha": [12, 16, 21, 25], "beta": [12, 20, 25], "energy_scal": 12, "microscop": [12, 13, 17, 19, 25], "beam": [12, 16, 17, 19, 21, 22, 25], "kev": [12, 15, 16, 17, 21, 22, 25], "converg": [12, 13, 17, 21, 22, 25], "semi": [12, 17, 20, 22, 25], "angl": [12, 17, 20, 22, 25], "mrad": [12, 17, 22, 25], "collect": [12, 13, 17, 20, 22, 25], "ev": [12, 13, 16, 17, 19, 21, 22, 25], "pesvoigt": [12, 14], "voigt": 12, "photoemiss": 12, "profil": [12, 17], "shirlei": 12, "non_isochromat": 12, "transmission_funct": 12, "spin": 12, "orbit": 12, "special": [12, 22], "suit": 12, "l": [12, 16, 22, 25], "where": [12, 17, 20, 21], "lorentzian": [12, 16], "approxim": [12, 13, 17, 22, 25], "formula": [12, 13], "david": 12, "area": [12, 16, 17, 21, 22, 25], "intens": [12, 16, 17, 23], "peak": [12, 13, 16, 17, 20, 21, 25], "centr": [12, 16, 17], "maximum": [12, 13, 16, 17, 21, 22, 25], "fwhm": [12, 17, 21, 22, 25], "sigma": [12, 16], "sqrt": 12, "log": [12, 16, 17, 22], "gamma": 12, "resolut": [12, 13, 16, 17, 21, 25], "shirley_background": 12, "spin_orbit_split": 12, "spin_orbit_branching_ratio": 12, "spin_orbit_splitting_energi": 12, "w": 12, "j": [12, 19], "appl": 12, "cryst": 12, "1986": 12, "63": [12, 21], "64": [12, 17], "1107": 12, "s0021889886089999": 12, "estimate_paramet": 12, "e1": [12, 16], "e2": [12, 16], "only_curr": [12, 16], "estim": [12, 15, 16, 17, 21], "calcul": [12, 15, 16, 17, 21, 22], "momenta": 12, "instanc": [12, 13, 16, 17], "x1": 12, "defin": [12, 16, 17, 21, 22], "limit": [12, 16, 17, 21], "spectral": [12, 16, 17, 22], "rang": [12, 16, 17, 22], "x2": 12, "exit": 12, "statu": 12, "requir": [12, 16, 17, 22, 24], "remove_background": 12, "cookbook": 12, "item": [12, 17, 25], "fittingdata": 12, "2000": 12, "scale": [12, 16, 17, 21], "phi": 12, "secondari": 12, "emiss": 12, "begin": 12, "case": [12, 17, 21, 22], "leq": 12, "tail": [12, 17], "asymmetri": 12, "vignet": [12, 14], "len": 12, "co": 12, "multipli": [12, 21], "edg": [12, 13, 16, 17, 22], "volumeplasmondrud": [12, 14], "plasmon_energi": 12, "drude": 12, "volum": [12, 17, 20], "plasmon": [12, 17, 22], "i_0": [12, 20], "delta": [12, 16, 17], "e_p": 12, "_compon": 12, "egerton": [12, 17, 19], "2nd": [12, 22], "edit": 12, "plenum": 12, "press": 12, "1996": [12, 19], "pp": 12, "154": 12, "158": 12, "equat": 12, "eds_sem_tm002": [13, 14, 17], "sem": [13, 16, 17, 21], "tm002": 13, "suppli": [13, 17, 21], "bundesanstalt": 13, "f\u00fcr": 13, "materialforschung": 13, "und": 13, "pr\u00fcfung": 13, "bam": [13, 21], "sampl": [13, 15, 16, 17, 20, 23], "\u00b5m": 13, "thick": [13, 17, 19, 20, 21], "layer": [13, 22], "c": [13, 15, 16, 17, 19, 21, 24], "al": [13, 15, 17, 21], "cu": [13, 15, 17, 21], "zr": [13, 17, 21], "silicon": 13, "substrat": 13, "www": [13, 21], "webshop": 13, "de": [13, 19, 20], "nvision40": 13, "carl": 13, "zeiss": 13, "detector": [13, 16, 17], "80": [13, 17, 21], "oxford": [13, 21], "instrument": [13, 17, 21, 25], "eds_tem_fept_nanoparticl": [13, 14, 17, 21], "tem": [13, 16, 17, 21], "fept": [13, 21], "bimetal": [13, 21], "nanoparticl": [13, 19, 21], "tecnai": 13, "osiri": 13, "200": 13, "kv": [13, 21], "d658": 13, "analyticaltwin": 13, "super": [13, 21], "brucker": 13, "eels_mnf": [13, 14], "add_powerlaw": 13, "add_nois": [13, 17], "navigation_shap": [13, 17], "artifici": 13, "core": [13, 16, 17, 22], "similar": 13, "l32": 13, "perovskit": 13, "oxid": 13, "random": [13, 16, 17], "experiment": [13, 16, 21, 22], "powerlaw": [13, 16, 17, 22], "seed": 13, "reproduc": [13, 22], "int": [13, 16, 17, 25], "randomst": 13, "tupl": [13, 16, 17, 22], "shape": [13, 17, 22], "space": [13, 17], "length": [13, 17, 22, 25], "eelsspectrum": [13, 14, 16, 17, 22], "eels_mn": 13, "With": [13, 21], "eels_low_loss": [13, 14], "eelsdb": [13, 14, 22], "spectrum_typ": [13, 22], "author": 13, "min_energi": 13, "max_energi": 13, "min_energy_compar": 13, "gt": 13, "max_energy_compar": 13, "lt": 13, "resolution_compar": 13, "max_n": 13, "monochrom": [13, 17], "order_direct": 13, "asc": 13, "verify_certif": 13, "show_progressbar": [13, 17], "coreloss": [13, 22], "lowloss": [13, 17, 22], "zeroloss": 13, "xrayab": 13, "text": 13, "filter": [13, 17], "presenc": 13, "correspond": [13, 15, 16, 17, 21, 22], "valid": [13, 15, 16, 17], "symbol": [13, 15, 16, 17, 22, 25], "chemic": [13, 17, 19, 21, 22], "l1": [13, 16], "l2": [13, 16], "m2": [13, 16], "m4": 13, "n2": 13, "n4": 13, "o2": 13, "o4": 13, "eq": 13, "less": [13, 17, 21], "than": [13, 17, 21, 22], "equal": [13, 15, 17], "greater": 13, "deafault": 13, "sort": [13, 17], "spectrumtyp": 13, "spectrummin": 13, "spectrummax": 13, "stepsiz": 13, "spectrumformula": 13, "spectrumel": 13, "spectrumupload": 13, "source_pur": 13, "spectrumedg": 13, "guntyp": 13, "beamenergi": 13, "acquisition_mod": [13, 25], "probes": 13, "beamcurr": 13, "integratetim": 13, "readout": 13, "darkcurr": 13, "gainvari": 13, "calibr": [13, 16, 17], "zeroloss_deconv": 13, "deconv_fourier_log": 13, "deconv_fourier_ratio": 13, "deconv_stephens_deconvolut": 13, "deconv_richardson_luci": 13, "deconv_maximum_entropi": 13, "deconv_oth": 13, "assoc_spectra": 13, "ref_freetext": 13, "ref_doi": 13, "ref_url": 13, "ref_author": 13, "ref_journ": 13, "ref_volum": 13, "ref_issu": 13, "ref_pag": 13, "ref_year": 13, "ref_titl": 13, "otherurl": 13, "desc": 13, "direct": 13, "verifi": 13, "websit": 13, "certif": 13, "rais": [13, 16, 17, 21], "invalid": 13, "continu": [13, 16, 22], "queri": 13, "potenti": 13, "secur": 13, "risk": 13, "progress": [13, 16, 17, 19], "bar": [13, 17], "prefer": [13, 17, 21], "match": [13, 17, 22], "criteria": 13, "materi": [14, 17, 19, 21, 22], "atomic_to_weight": [14, 15, 21], "density_of_mixtur": [14, 15], "mass_absorption_coeffici": [14, 15, 21], "mass_absorption_mixtur": [14, 15, 21], "weight_to_atom": [14, 15, 21], "edsmodel": [14, 16, 17], "edssemmodel": [14, 16, 17], "edstemmodel": [14, 16, 17], "eelsmodel": [14, 16, 17, 22], "dielectricfunct": [14, 17, 20], "edssemspectrum": [14, 16, 17, 21], "edsspectrum": [14, 16, 17], "edstemspectrum": [14, 16, 17, 21], "lazydielectricfunct": [14, 17], "lazyedssemspectrum": [14, 17], "lazyedsspectrum": [14, 17], "lazyedstemspectrum": [14, 17], "lazyeelsspectrum": [14, 17], "atomic_perc": [15, 21], "auto": [15, 17, 21], "atom": [15, 17, 19, 20, 21, 22], "percent": [15, 17, 21], "weight": [15, 16, 17, 21], "fraction": [15, 16, 17], "composit": [15, 17, 21], "abbrevi": [15, 21], "zn": [15, 16, 21], "take": [15, 17, 22], "weight_perc": [15, 17, 21], "modern": 15, "bronz": 15, "93": 15, "sn": 15, "88": [15, 21], "00501989": 15, "99498011": 15, "mean": [15, 16, 17, 22], "harmon": 15, "densiti": [15, 17, 21, 22], "mixtur": 15, "retriev": [15, 21, 22], "intern": [15, 17], "differ": [15, 16, 17, 21, 22], "divid": [15, 17], "sum": [15, 17, 20], "normal": [15, 17], "cm3": 15, "6903187973131466": 15, "mass": [15, 17, 19, 20], "absorpt": [15, 17, 19], "mu": 15, "rho": 15, "absorb": 15, "pure": [15, 21], "chantler2005": [15, 19, 21], "al_ka": [15, 16, 17, 21, 25], "cm": [15, 17, 21], "c_ka": [15, 16, 17, 21], "26330": [15, 21], "38933818": [15, 21], "372": [15, 21], "02616732": [15, 21], "dx": 15, "org": [15, 19], "18434": 15, "t4hs32": 15, "chantler": [15, 19], "olsen": [15, 19], "dragoset": [15, 19], "kishor": [15, 19], "kotochigova": [15, 19], "zucker": [15, 19], "d": [15, 16, 19], "2005": 15, "factor": [15, 17, 19, 21], "attenu": [15, 19], "tabl": [15, 17, 22], "dimens": [15, 17, 20, 21], "matrix": 15, "2587": [15, 21], "41616439": 15, "wt": 15, "th": 15, "19698614": 15, "80301386": 15, "auto_background": [16, 17], "auto_add_lin": [16, 17], "arg": [16, 17], "subclass": [16, 17, 20, 22], "automat": [16, 17, 21, 22, 24], "add_family_lin": [16, 17], "polynomi": [16, 17, 21], "add_polynomial_background": [16, 17], "creator": 16, "fit_background": [16, 21], "calibrate_energy_axi": [16, 21], "calibrate_xray_lin": [16, 21], "au_ma": 16, "sub_weight": [16, 21], "mn_la": [16, 17, 21], "bound": [16, 21], "xray_lin": [16, 17, 21, 25], "from_el": [16, 17], "xrai": [16, 17], "configur": [16, 22], "appropi": 16, "familii": 16, "ka": [16, 17, 21, 25], "kb": [16, 17, 21], "too": 16, "main": [16, 17, 21], "those": [16, 17, 22], "altern": [16, 17, 21, 24], "eg": [16, 17], "zn_ka": 16, "notimplementederror": [16, 17], "non": [16, 17, 22], "uniform": [16, 17], "background_compon": 16, "degre": [16, 17, 25], "freedom": 16, "dof": 16, "chi": 16, "squar": [16, 21], "chisq": 16, "all_alpha": 16, "width": [16, 17, 21, 22, 25], "place": [16, 17], "extrapol": [16, 17], "energy_resolution_mnka": [16, 17, 21, 25], "word": 16, "singl": [16, 17, 20, 21, 22], "sub": [16, 21], "famili": [16, 17], "current": [16, 17, 22, 25], "disable_xray_lin": [16, 21], "disabl": [16, 21, 22], "enable_xray_lin": [16, 21], "start_energi": [16, 17], "end_energi": 16, "windows_sigma": 16, "lower": [16, 17], "upper": [16, 17], "around": [16, 17, 22], "free_background": [16, 21], "fix_background": [16, 21], "fix_sub_xray_lines_weight": [16, 21], "establish": 16, "twin": 16, "fix_xray_lines_energi": [16, 21], "actual": [16, 22], "fix_xray_lines_width": [16, 21], "yscale": 16, "free_sub_xray_lines_weight": [16, 21], "free_xray_lines_energi": [16, 21], "001": 16, "free_xray_lines_width": [16, 21], "get_lines_intens": [16, 17, 21], "plot_result": [16, 17, 21], "only_on": [16, 17], "only_lin": [16, 17, 21], "corresp": 16, "undefin": [16, 17], "empti": [16, 17], "same": [16, 17, 21, 22, 25], "syntax": [16, 17], "add_lin": [16, 17, 21], "subset": [16, 17, 21], "oper": [16, 17, 24], "instead": [16, 17, 22], "highest": [16, 17, 21], "abov": [16, 17, 21, 22, 24], "overvoltag": [16, 17, 21], "util": [16, 17, 22, 23, 25], "plot_sign": [16, 17], "ta_ma": 16, "thing": [16, 17], "g1": [16, 22], "g2": [16, 22], "could": [16, 21], "Or": 16, "acquir": [16, 17, 22, 25], "constructor": 16, "auto_add_edg": [16, 17], "assum": [16, 17, 21, 22], "effect": [16, 17, 22, 23], "ioniz": [16, 17, 21, 22], "ionis": [16, 17, 22], "hydrogen": [16, 17, 22], "hartre": [16, 17, 22], "slater": [16, 17, 19, 22], "specifi": [16, 17, 21, 22], "path": [16, 17, 22], "recreat": [16, 17], "disable_background": [16, 22], "disable_edg": 16, "edges_list": 16, "onset": [16, 17, 22], "region": [16, 17, 22], "otherwis": [16, 17, 22, 25], "enable_edg": [16, 22], "enable_background": [16, 22], "disable_fine_structur": [16, 22], "set_all_edges_intensities_posit": [16, 22], "unset_all_edges_intensities_posit": [16, 22], "enable_free_onset_energi": [16, 22], "disable_free_onset_energi": [16, 22], "fix_edg": [16, 22], "free_edg": [16, 22], "onset_energi": [16, 22], "dure": [16, 17, 25], "freed": 16, "smart_fit": [16, 22], "optim": [16, 22], "algorithm": [16, 17, 22], "lm": 16, "levenberg": 16, "marquardt": 16, "trf": 16, "trust": 16, "reflect": [16, 17], "dogbox": 16, "dogleg": 16, "rectangular": 16, "odr": 16, "orthogon": 16, "distanc": [16, 21, 25], "regress": 16, "doe": [16, 17, 21, 22], "here": [16, 21], "document": [16, 17, 21, 22, 24, 25], "differenti": 16, "evolut": 16, "global": [16, 22], "differential_evolut": 16, "dual": [16, 19], "anneal": 16, "dual_ann": 16, "shgo": 16, "simplici": 16, "homologi": 16, "loss_funct": 16, "ml": 16, "poisson": [16, 17], "huber": 16, "callabl": 16, "neg": [16, 17], "likelihood": [16, 17], "mle": 16, "huber_delta": 16, "own": [16, 17], "grad": 16, "fd": 16, "analyt": [16, 22], "whether": [16, 17], "about": [16, 17, 22, 24, 25], "gradient": 16, "deriv": [16, 17, 22], "finit": 16, "scheme": 16, "numer": [16, 17], "fd_scheme": 16, "speed": 16, "sinc": [16, 17], "vector": [16, 17], "Not": [16, 17], "update_plot": 16, "slow": [16, 17], "down": [16, 22], "visual": [16, 21, 22], "print_info": [16, 17], "fit_output": 16, "optimizeresult": 16, "return_info": [16, 17], "chosen": [16, 17], "choic": [16, 17], "coordin": [16, 17], "quantifi": [16, 17, 22], "independ": [16, 24], "remove_fine_structure_data": [16, 22], "routin": [16, 22], "fine_structure_width": [16, 22], "resolve_fine_structur": [16, 22], "preedge_safe_window_width": 16, "i1": 16, "adjust": [16, 21, 22], "avoid": [16, 17, 22], "overlap": [16, 22], "everi": [16, 22, 25], "resume_auto_fine_structure_width": 16, "suspend_auto_fine_structure_width": [16, 22], "ext_force_posit": 16, "ext_bound": 16, "set_convolution_axi": 16, "precis": [16, 17], "convolut": 16, "cascad": 16, "style": 16, "procedur": [16, 22], "act": [16, 22], "deactiv": [16, 22], "Then": [16, 22], "repeat": [16, 22], "until": [16, 17, 21, 22], "simultan": [16, 22], "never": [16, 22], "two_area_background_estim": 16, "try": [16, 17, 21, 22], "guess": 16, "unset": 16, "lazi": 17, "counterpart": 17, "signal_dimens": 17, "bin": [17, 21], "transmiss": [17, 19, 25], "microscopi": [17, 19], "scan": [17, 21, 25], "dielectr": [17, 22, 23], "unbin": 17, "complexsignal1d": [17, 20], "ndarrai": 17, "axesmanag": [17, 21], "whose": 17, "might": 17, "mandatori": 17, "original_metadata": 17, "rag": 17, "overwrit": [17, 21], "noth": 17, "get_electron_energy_loss_spectrum": [17, 20], "zlp": [17, 22], "comput": [17, 21, 22, 23], "basesign": [17, 21, 22], "intengr": 17, "ii": [17, 22], "navigation_dimens": 17, "integr": [17, 20, 21, 22, 25], "nm": [17, 21, 25], "get_number_of_effective_electron": [17, 20], "nat": 17, "cumul": 17, "beth": [17, 20], "rule": [17, 20], "rise": [17, 20], "definit": [17, 20], "neff1": 17, "neff2": 17, "n_": [17, 20], "mathrm": [17, 20], "eff_": 17, "eff": 17, "im": [17, 20], "epsilon": [17, 20], "epsilon_": [17, 20], "both": [17, 20, 21, 22], "molecul": [17, 20], "springer": [17, 19], "verlag": [17, 19], "2011": [17, 19], "kward": 17, "measur": [17, 22, 25], "boolean": 17, "get_calibration_from": [17, 21], "ref": 17, "nb_pix": 17, "primari": 17, "rippl": 17, "inca": [17, 21], "live": 17, "dead": [17, 25], "pixel": [17, 21], "averag": [17, 21], "live_tim": [17, 21, 25], "tilt_stag": [17, 21], "azimuth_angl": [17, 21, 25], "elevation_angl": [17, 21, 25], "mode": 17, "fill": 17, "acquisition_instru": [17, 21, 23], "135": 17, "now": [17, 21, 24], "130": [17, 21], "set_el": [17, 21], "set_lin": [17, 21], "although": [17, 21], "thei": [17, 21, 22], "ocassion": 17, "custom": [17, 22], "fe_kb": 17, "addition": [17, 21], "cu_la": [17, 21], "zr_la": [17, 21], "30": [17, 21, 22], "cu_ka": [17, 21], "mn_ka": [17, 21], "add_xray_lines_mark": 17, "render_figur": 17, "marker": [17, 21], "spec": 17, "estimate_background_window": [17, 21], "line_width": [17, 21], "windows_width": 17, "window": [17, 21, 22], "els": [17, 24], "windows_posit": 17, "2d": 17, "bw": [17, 21], "background_window": [17, 21], "fe_ka": [17, 21], "4039": 17, "2754": 17, "pt_la": [17, 21], "4421": 17, "15090": 17, "estimate_integration_window": 17, "integration_window": [17, 21], "row": 17, "iw": 17, "3710": 17, "15872": 17, "map": [17, 21], "sume": 17, "subtract": 17, "while": [17, 21, 22], "ambigu": 17, "allow": [17, 22], "integration_windows_width": 17, "63316": [17, 21], "96700": 17, "8987": [17, 21], "53597": 17, "46716": 17, "get_take_off_angl": 17, "off": [17, 21], "toa": 17, "leav": [17, 25], "surfac": [17, 22, 25], "toward": 17, "stage": [17, 21], "tilt_alpha": [17, 25], "tilt_beta": [17, 25], "take_off_angl": 17, "37": [17, 21], "57": [17, 21], "plot_mark": 17, "autoscal": 17, "v": [17, 20], "norm": 17, "navigator_kwd": 17, "associ": 17, "link": [17, 21], "explor": 17, "imag": [17, 21, 22], "stack": [17, 21], "horizont": 17, "slider": 17, "y": [17, 21, 24, 25], "z": [17, 19, 21, 25], "index": [17, 21, 22, 24], "notic": [17, 22], "compute_navig": 17, "signal_shap": 17, "navigator_shap": 17, "dynam": 17, "rgb": 17, "rgba": 17, "add_mark": 17, "perman": 17, "larg": 17, "veri": [17, 22], "addit": [17, 21, 22], "matplotlib": 17, "pyplot": 17, "imshow": 17, "prior": 17, "power_spectrum": 17, "complex": [17, 20, 22], "combin": 17, "charact": [17, 21], "vertic": 17, "maxima": 17, "reset": [17, 22], "rebin": 17, "new_shap": 17, "crop": 17, "smaller": 17, "interpol": 17, "twice": 17, "size": [17, 21, 22, 25], "underli": 17, "integ": 17, "fewer": 17, "quota": 17, "produc": [17, 21], "determin": [17, 19, 21], "appear": 17, "preserv": 17, "behaviour": 17, "kept": 17, "receiv": 17, "ones": [17, 25], "164": 17, "uint8": 17, "unit16": 17, "s2": 17, "uint16": 17, "keep": 17, "s3": 17, "unsign": 17, "platform": 17, "s4": 17, "uint32": 17, "remove_xray_lines_mark": 17, "render": 17, "figur": 17, "eras": 17, "rechunk": 17, "dataaxi": 17, "directli": [17, 21, 25], "duplic": 17, "chunk": 17, "retain": 17, "intend": 17, "integrate1d": 17, "erron": 17, "misus": 17, "warn": [17, 21], "var": 17, "indexmax": 17, "indexmin": 17, "valuemax": 17, "valuemin": 17, "1024": [17, 21], "signal2d": 17, "static": [17, 22], "cl_get_mass_thick": 17, "mass_thick": [17, 21], "calcult": 17, "cliff": [17, 19, 21], "lorim": [17, 19, 21], "initi": 17, "k_factor": 17, "quantif": [17, 22, 23], "edx": [17, 25], "kg": [17, 21], "m\u00b2": [17, 21], "decomposit": 17, "normalize_poissonian_nois": 17, "navigation_mask": 17, "appli": [17, 21, 22, 25], "learning_result": 17, "poissonian": 17, "approach": [17, 19, 21, 22], "mark": 17, "vacuum_mask": 17, "mask": 17, "threshold": [17, 22], "morpholog": 17, "svd": 17, "mlpca": 17, "sklearn_pca": 17, "nmf": 17, "sparse_pca": 17, "mini_batch_sparse_pca": 17, "rpca": 17, "orpca": 17, "ornmf": 17, "implement": [17, 22], "fit_transform": 17, "transform": [17, 21, 22], "scikit": 17, "output_dimens": 17, "auto_transpos": 17, "transpos": 17, "boost": 17, "signal_mask": 17, "var_arrai": 17, "varianc": 17, "pca": 17, "var_func": 17, "reproject": 17, "howev": [17, 21, 22], "sklearn": 17, "svd_solver": 17, "arpack": 17, "solver": 17, "polici": 17, "input": [17, 22], "500x500": 17, "extract": [17, 21], "smallest": 17, "effici": 17, "exact": 17, "truncat": 17, "afterward": 17, "lapack": 17, "linalg": 17, "postprocess": 17, "spars": 17, "strictli": [17, 22], "extmath": 17, "randomized_svd": 17, "treatment": 17, "_data_before_treat": 17, "restor": 17, "undo_treat": 17, "made": [17, 21], "benefici": 17, "care": 17, "taken": 17, "overwritten": 17, "si": [17, 21], "change_dtyp": 17, "keenan": 17, "p": [17, 19, 21], "kotula": 17, "account": [17, 22, 24], "multivari": 17, "tof": 17, "sim": 17, "surf": 17, "anal": 17, "2004": 17, "203": 17, "212": 17, "020028": 17, "get_probe_area": 17, "navigation_ax": 17, "probe": [17, 21], "nm\u00b2": [17, 21, 25], "\u03bcm": 17, "composition_unit": [17, 21], "absorption_correct": [17, 21], "convergence_criterion": 17, "probe_area": [17, 21, 25], "max_iter": [17, 21], "zeta": [17, 19, 21], "cross": [17, 19, 21], "success": 17, "percentag": 17, "critera": 17, "intensitii": 17, "cl": [17, 21], "cross_sect": [17, 21], "kfactor": [17, 21], "alphabet": [17, 21], "982": 17, "cr_ka": 17, "ni_ka": 17, "unless": 17, "specfi": 17, "travel": 17, "reach": [17, 21], "nb": 17, "criterium": 17, "threhsold": 17, "correciton": 17, "450226": [17, 21], "075602": [17, 21], "fe": [17, 21], "pt": [17, 21], "la": [17, 19, 21], "re": 17, "41": [17, 21], "84": [17, 21], "59": [17, 21], "beam_curr": [17, 21, 25], "real_tim": [17, 21, 25], "na": [17, 21, 25], "133": 17, "312296": 17, "vacuum": [17, 20], "consid": 17, "opnen": 17, "s_vac": 17, "ones_lik": 17, "005": 17, "include_pre_edg": 17, "declar": [17, 22], "present": [17, 21], "NOT": 17, "valueerror": 17, "also_align": [17, 22], "print_stat": 17, "align": 17, "estimate_zero_loss_peak_centr": [17, 22], "proce": 17, "accuraci": [17, 22], "align1d": [17, 22], "ident": 17, "summari": 17, "statist": 17, "correl": 17, "nan": 17, "Will": 17, "within": [17, 22], "roi": 17, "s_ll": 17, "narrow": [17, 21, 22], "estimate_shift1d": 17, "edges_at_energi": [17, 22], "only_major": 17, "closest": [17, 22], "show": 17, "shown": [17, 21, 22], "nearbi": [17, 22], "ascend": 17, "similarli": [17, 21], "descend": 17, "ascii": 17, "environ": [17, 22], "estimate_elastic_scattering_intens": [17, 22], "rough": 17, "elast": 17, "constant": 17, "i0": 17, "estimate_elastic_scattering_threshold": [17, 22], "tol": [17, 22], "window_length": 17, "polynomial_ord": 17, "inflexion": [17, 22], "look": 17, "local": [17, 22], "often": [17, 22], "bulk": [17, 21], "smoother": [17, 22], "what": [17, 22], "restrict": 17, "toler": [17, 21, 22], "guarante": 17, "savitzki": 17, "golai": 17, "fall": 17, "minima": 17, "caus": [17, 22], "odd": 17, "couldn": 17, "find_peaks1d_ohav": [17, 21, 22], "fourier_ratio_deconvolut": [17, 22], "inde": [17, 22], "achiev": [17, 21], "awar": 17, "estimate_thick": [17, 22], "mean_free_path": 17, "rel": [17, 22], "absolut": [17, 22], "hyperspectrum": 17, "well": [17, 22], "roughli": 17, "across": [17, 22], "nanomet": 17, "angular": [17, 22], "mfp": 17, "just": 17, "coars": 17, "zlpc": 17, "meet": 17, "criterion": 17, "fourier_log_deconvolut": [17, 22], "add_zlp": 17, "fourier": 17, "deconvolut": 17, "deconvolv": 17, "channel": 17, "decai": 17, "smoothli": 17, "side": [17, 21], "extrapolate_lowloss": 17, "extrapolate_coreloss": 17, "reduc": [17, 22], "amplif": 17, "half": [17, 25], "snr": 17, "generate_subshel": 17, "subshel": 17, "get_zero_loss_peak_mask": 17, "zero_loss_peak_mask_width": 17, "kramers_kronig_analysi": [17, 22], "full_output": 17, "ssd": 17, "kramer": 17, "kronig": 17, "relat": [17, 22], "fft": [17, 22], "loop": 17, "devis": 17, "suppos": 17, "unoxid": 17, "planar": 17, "neglect": 17, "coupl": 17, "retard": 17, "broaden": 17, "excit": [17, 21, 22], "particl": 17, "refract": [17, 22], "medium": 17, "stabil": 17, "ep": 17, "epsilon_1": 17, "epsilon_2": 17, "matlab": 17, "wrap": 17, "problem": 17, "workaround": 17, "pad": 17, "plot_edg": 17, "only_edg": 17, "draw": 17, "zr_l": 17, "zr_l3": 17, "power_law_extrapol": 17, "window_s": 17, "extrapolation_s": 17, "fix_neg_r": 17, "flag": 17, "done": 17, "print_edges_near_energi": [17, 22], "sequenc": 17, "overrid": 17, "prettytext": 17, "represent": 17, "termin": 17, "richardson_lucy_deconvolut": [17, 22], "psf": 17, "num_work": 17, "1d": 17, "richardson": 17, "luci": 17, "kernel": 17, "spatial": [17, 21], "worker": 17, "dask": 17, "gloter": 17, "douiri": 17, "tenc": 17, "colliex": 17, "solut": 17, "ultramicroscopi": [17, 19], "96": [17, 19, 21], "septemb": 17, "2003": 17, "385": 17, "400": 17, "necessari": [17, 21, 22], "ui": 17, "spikes_diagnosi": 17, "histogram": 17, "choos": 17, "spike": 17, "get_histogram": 17, "spikes_removal_tool": 17, "graphic": 17, "luminesc": 17, "detect": 17, "introduc": 17, "artefact": 17, "mitig": 17, "interest": 17, "spikesremov": 17, "quarter": 17, "lazycomplexsignal1d": 17, "delai": [17, 22], "explicitli": 17, "request": [17, 21], "expect": 17, "instanti": 17, "da": 17, "as_lazi": 17, "lazysignal1d": 17, "burdet2013": [19, 21], "burdet": 19, "vannod": 19, "hessler": 19, "wyser": 19, "rappaz": 19, "cantoni": 19, "laser": 19, "weld": 19, "niti": 19, "stainless": 19, "steel": 19, "wire": 19, "fib": 19, "acta": 19, "materialia": 19, "61": 19, "2013": 19, "3090": 19, "3098": 19, "1016": 19, "actamat": 19, "069": 19, "photoelectr": 19, "92": 19, "mev": 19, "nist": 19, "physic": 19, "gov": 19, "ffast": 19, "egerton2011": [19, 20, 22], "1007": 19, "978": 19, "4419": 19, "9583": 19, "macarthur2016": [19, 21], "macarthur": 19, "haigh": 19, "ozkaya": 19, "nellist": 19, "lozano": 19, "perez": 19, "quantit": [19, 21], "catalyst": 19, "partial": 19, "microsc": 19, "microan": 19, "2016": 19, "71": 19, "1017": 19, "s1431927615015494": 19, "rossouw2015": [19, 21], "rossouw": 19, "pe\u00f1a": 19, "ducati": 19, "knappett": 19, "wheatlei": 19, "midglei": 19, "multicompon": 19, "unmix": 19, "nanoheterostructur": 19, "overcom": 19, "tradit": 19, "challeng": 19, "nanoscal": 19, "machin": 19, "nano": 19, "lett": 19, "2015": 19, "2716": 19, "2720": 19, "1021": 19, "ac": 19, "nanolett": 19, "5b00449": 19, "watanabe1996": [19, 21], "watanab": 19, "horita": 19, "nemoto": 19, "microanalysi": 19, "187": 19, "198": 19, "s0304": 19, "3991": 19, "00070": 19, "watanabe2006": [19, 21], "william": 19, "thin": [19, 21], "specimen": [19, 21], "review": 19, "221": 19, "2006": 19, "89": 19, "109": 19, "onlinelibrari": 19, "wilei": 19, "com": [19, 21], "1111": 19, "1365": 19, "2818": 19, "01549": 19, "williams2009": 19, "carter": 19, "textbook": 19, "scienc": 19, "york": 19, "2009": 19, "387": 19, "76501": 19, "inherit": [20, 22], "complexsign": 20, "thu": 20, "access": [20, 25], "sure": [20, 22], "properli": 20, "set_signal_typ": [20, 21, 22], "eff1": 20, "m_": 20, "hbar": 20, "int_": 20, "eff2": 20, "n_a": 20, "epsilon_0": 20, "permitt": [20, 22], "m_0": 20, "charg": 20, "naiv": 20, "2i_": 20, "a_": 20, "ln": [20, 21], "theta": 20, "characterist": 20, "chapter": [21, 22, 25], "130mb": 21, "urllib": 21, "urlretriev": 21, "urlopen": 21, "zipfil": 21, "dropbox": 21, "s7cx92mfh2zvt3x": 21, "hyperspy_demos_edx_sem_fil": 21, "raw": 21, "extractal": 21, "abl": 21, "among": 21, "rpl": 21, "bruker": 21, "export": 21, "ni_superalloy_1pix": 21, "record": [21, 25], "as_signal1d": 21, "back": 21, "ni_superalloy_010": 21, "256": 21, "224": 21, "wildcard": 21, "si4d": 21, "ni_superalloy_0": 21, "eds_tem": [21, 25], "eds_sem": [21, 25], "assign": [21, 22], "exist": 21, "These": [21, 24], "35": 21, "006855": 21, "eds_detector_elev": 21, "manual": [21, 22], "info": 21, "s1pixel": 21, "descript": [21, 22], "accept": 21, "sever": [21, 22], "onc": 21, "fe_la": 21, "example_sign": 21, "eds_sem_spectrum": 21, "general_properti": 21, "atomic_weight": 21, "845": 21, "iron": 21, "physical_properti": 21, "874": 21, "atomic_properti": 21, "404": [21, 22], "0568": 21, "1272": 21, "705": 21, "lb3": 21, "792": 21, "02448": 21, "615": 21, "3086": 21, "62799": 21, "12525": 21, "nearest": 21, "get_xray_lines_near_energi": 21, "maxpeakn": 21, "ca_la": 21, "b_ka": 21, "visualis": 21, "3d": 21, "label": [21, 22, 25], "ecdlgwxjq04m5mx": 21, "hyperspy_demos_eds_tem_fil": 21, "hyperspy_demos_edx_tem_fil": 21, "core_shel": 21, "hdf5": [21, 22], "plot_imag": 21, "eds_map": 21, "axes_decor": 21, "scalebar": 21, "isig": 21, "tm001": 21, "next": [21, 22, 24], "One": 21, "65241": 21, "al_kb": 21, "ar_ka": 21, "3136": 21, "ar_kb": 21, "79258": 21, "1640": 21, "cu_kb": 21, "74032": 21, "cu_lb1": 21, "cu_ln": 21, "cu_ll": 21, "cu_lb3": 21, "47796": 21, "mn_kb": 21, "73665": 21, "mn_ln": 21, "mn_ll": 21, "mn_lb3": 21, "68703": 21, "zr_lb1": 21, "zr_lb2": 21, "zr_ln": 21, "zr_lg3": 21, "zr_ll": 21, "zr_lg1": 21, "zr_lb3": 21, "background_order_6": 21, "000000": 21, "131": 21, "927922": 21, "tune": 21, "4865": 21, "9577": 21, "2774": 21, "95": 21, "0478": 21, "9295": 21, "56": 21, "0423": 21, "75": 21, "manufactur": 21, "convers": 21, "possibl": [21, 22], "edx_cross_section_to_zeta": 21, "zeta_to_edx_cross_sect": 21, "carri": 21, "04": 21, "revers": 21, "acquisit": [21, 25], "dwell": [21, 25], "accur": [21, 22], "diamet": 21, "00125": 21, "high": 21, "subsequ": 21, "much": [21, 22], "illumin": [21, 25], "becom": 21, "put": [21, 22], "still": [21, 22], "messag": 21, "remind": 21, "rather": 21, "experi": 21, "additt": 21, "At": 21, "parallel": 21, "film": 21, "basi": 21, "particularli": 21, "inhomogen": 21, "system": [21, 24], "thermo": 21, "fisher": 21, "separ": [21, 22], "4161643905127": 21, "electron_rang": 21, "xray_rang": 21, "copper": 21, "micron": 21, "9361716759499248": 21, "carbon": 21, "30kv": 21, "density_gcm3": 21, "6418811280855454": 21, "8766744984001607": 21, "discuss": 22, "parent": 22, "previou": 22, "archiv": 22, "hspy": 22, "get_edges_near_energi": 22, "identifi": 22, "arrang": 22, "849": 22, "846": 22, "852": 22, "misc": [22, 25], "532": 22, "o_k": 22, "pd_m3": 22, "sb_m5": 22, "sb_m4": 22, "la_m4": 22, "fe_l1": 22, "artificial_data": 22, "get_core_loss_eels_sign": 22, "401": 22, "relev": [22, 24, 25], "n_k": 22, "abrupt": 22, "sc_l3": 22, "402": 22, "sharp": 22, "cd_m5": 22, "sc_l2": 22, "407": 22, "mo_m2": 22, "410": 22, "mo_m3": 22, "392": 22, "cd_m4": 22, "411": 22, "inspect": 22, "identif": 22, "drag": 22, "mous": 22, "button": 22, "toggl": 22, "complementari": 22, "box": 22, "tick": 22, "outsid": 22, "aid": 22, "iakoubovskii2008": 22, "inelast": 22, "imfp": 22, "unknown": 22, "robust": 22, "easi": 22, "quasi": 22, "rudimentari": 22, "wise": 22, "certain": 22, "impact": 22, "npoint": 22, "realli": 22, "boron": [22, 25], "nitrid": 22, "onlin": 22, "hexagon": 22, "worth": 22, "life": 22, "hand": 22, "plural": 22, "b_k": 22, "conveni": 22, "6599071": 22, "pooch": 22, "gosh10": 22, "url": 22, "segger_guzzinati_kohl_1": 22, "known_hash": 22, "md5": 22, "d65d5c23142532fde0a80e160ab51574": 22, "entir": 22, "elem": 22, "045648": 22, "048061": 22, "permit": 22, "easili": 22, "manifest": 22, "distinct": 22, "few": 22, "ten": 22, "due": 22, "variat": 22, "probabl": 22, "offer": 22, "insight": 22, "bond": 22, "cannot": 22, "principl": 22, "mimic": 22, "fine_structure_act": 22, "decreas": 22, "expens": 22, "fine_structure_coeff": 22, "Its": 22, "zoom": 22, "bn": 22, "let": 22, "nitrogen": [22, 25], "set_signal_rang": 22, "160": 22, "194": 22, "45": 22, "command": [22, 24], "better": 22, "closer": 22, "essenti": 22, "desir": 22, "sometim": 22, "suspend": 22, "resum": 22, "replac": [22, 24], "gaussianhf": 22, "b_k_l1": 22, "201": 22, "b_k_l2": 22, "know": 22, "would": 22, "simpli": 22, "fine_structure_compon": 22, "3rd": 22, "205": 22, "fine_structure_spline_onset": 22, "plot_compon": 22, "white": 22, "rest": 22, "pip": 23, "spectrometri": 23, "tool": 23, "bibliographi": 23, "instruct": 24, "pend": 24, "meantim": 24, "bundl": 24, "standalon": 24, "program": 24, "recommend": 24, "anyth": 24, "appropri": 24, "suggest": 24, "miniforg": 24, "alreadi": 24, "prompt": 24, "complet": 24, "troubl": 24, "especi": 24, "unfamiliar": 24, "enter": 24, "anaconda": 24, "scratch": 24, "jupyterlab": 24, "lab": 24, "upgrad": 24, "notifi": 24, "watch": 24, "tree": 25, "node": 25, "leaf": 25, "quantiti": 25, "dimensionless": 25, "_unit": 25, "suffix": 25, "besid": 25, "dictionarytreebrows": 25, "set_item": 25, "has_item": 25, "get_item": 25, "repres": 25, "diagram": 25, "parenthes": 25, "detector_typ": 25, "\u00ba": 25, "magnif": 25, "rotat": 25, "mm": 25, "working_dist": 25, "apertur": 25, "dwell_tim": 25, "exposur": 25, "frame_numb": 25, "spectromet": 25, "camera_length": 25, "compos": 25, "ni_lb": 25, "aluminum": 25, "nickel": 25, "vg": 25, "501": 25, "stem": 25, "camera": 25, "tilt": 25, "se": 25, "aperture_s": 25, "entranc": 25, "frame": 25, "gatan": 25, "enfinium": 25, "er": 25, "977": 25, "azimuth": 25, "perpendicular": 25, "elev": 25, "manganes": 25, "spent": 25, "compens": 25}, "objects": {"exspy": [[12, 0, 0, "-", "components"], [13, 0, 0, "-", "data"], [15, 0, 0, "-", "material"], [16, 0, 0, "-", "models"], [17, 0, 0, "-", "signals"]], "exspy.components": [[12, 1, 1, "", "DoublePowerLaw"], [12, 1, 1, "", "EELSArctan"], [12, 1, 1, "", "EELSCLEdge"], [12, 1, 1, "", "PESVoigt"], [12, 1, 1, "", "SEE"], [12, 1, 1, "", "Vignetting"], [12, 1, 1, "", "VolumePlasmonDrude"]], "exspy.components.DoublePowerLaw": [[12, 2, 1, "", "function_nd"], [12, 3, 1, "", "left_cutoff"]], "exspy.components.EELSCLEdge": [[12, 2, 1, "", "as_dictionary"], [12, 4, 1, "", "fine_structure_smoothing"], [12, 2, 1, "", "fix_fine_structure"], [12, 2, 1, "", "free_fine_structure"], [12, 2, 1, "", "function"], [12, 2, 1, "", "get_fine_structure_as_signal1D"], [12, 2, 1, "", "gui"], [12, 2, 1, "", "set_microscope_parameters"]], "exspy.components.PESVoigt": [[12, 2, 1, "", "estimate_parameters"]], "exspy.data": [[13, 5, 1, "", "EDS_SEM_TM002"], [13, 5, 1, "", "EDS_TEM_FePt_nanoparticles"], [13, 5, 1, "", "EELS_MnFe"], [13, 5, 1, "", "EELS_low_loss"], [13, 5, 1, "", "eelsdb"]], "exspy.material": [[15, 5, 1, "", "atomic_to_weight"], [15, 5, 1, "", "density_of_mixture"], [15, 5, 1, "", "mass_absorption_coefficient"], [15, 5, 1, "", "mass_absorption_mixture"], [15, 5, 1, "", "weight_to_atomic"]], "exspy.models": [[16, 1, 1, "", "EDSModel"], [16, 1, 1, "", "EDSSEMModel"], [16, 1, 1, "", "EDSTEMModel"], [16, 1, 1, "", "EELSModel"]], "exspy.models.EDSModel": [[16, 2, 1, "", "add_family_lines"], [16, 2, 1, "", "add_polynomial_background"], [16, 2, 1, "", "as_dictionary"], [16, 2, 1, "", "calibrate_energy_axis"], [16, 2, 1, "", "calibrate_xray_lines"], [16, 2, 1, "", "disable_xray_lines"], [16, 2, 1, "", "enable_xray_lines"], [16, 2, 1, "", "fit_background"], [16, 2, 1, "", "fix_background"], [16, 2, 1, "", "fix_sub_xray_lines_weight"], [16, 2, 1, "", "fix_xray_lines_energy"], [16, 2, 1, "", "fix_xray_lines_width"], [16, 2, 1, "", "free_background"], [16, 2, 1, "", "free_sub_xray_lines_weight"], [16, 2, 1, "", "free_xray_lines_energy"], [16, 2, 1, "", "free_xray_lines_width"], [16, 2, 1, "", "get_lines_intensity"], [16, 2, 1, "", "remove"]], "exspy.models.EELSModel": [[16, 2, 1, "", "append"], [16, 2, 1, "", "disable_background"], [16, 2, 1, "", "disable_edges"], [16, 2, 1, "", "disable_fine_structure"], [16, 2, 1, "", "disable_free_onset_energy"], [16, 2, 1, "", "enable_background"], [16, 2, 1, "", "enable_edges"], [16, 2, 1, "", "enable_fine_structure"], [16, 2, 1, "", "enable_free_onset_energy"], [16, 2, 1, "", "fit"], [16, 2, 1, "", "fit_background"], [16, 2, 1, "", "fix_edges"], [16, 2, 1, "", "fix_fine_structure"], [16, 2, 1, "", "free_edges"], [16, 2, 1, "", "free_fine_structure"], [16, 2, 1, "", "quantify"], [16, 2, 1, "", "remove"], [16, 2, 1, "", "remove_fine_structure_data"], [16, 2, 1, "", "resolve_fine_structure"], [16, 2, 1, "", "resume_auto_fine_structure_width"], [16, 2, 1, "", "set_all_edges_intensities_positive"], [16, 2, 1, "", "set_convolution_axis"], [16, 4, 1, "", "signal"], [16, 2, 1, "", "smart_fit"], [16, 2, 1, "", "suspend_auto_fine_structure_width"], [16, 2, 1, "", "two_area_background_estimation"], [16, 2, 1, "", "unset_all_edges_intensities_positive"]], "exspy.signals": [[17, 1, 1, "", "DielectricFunction"], [17, 1, 1, "", "EDSSEMSpectrum"], [17, 1, 1, "", "EDSSpectrum"], [17, 1, 1, "", "EDSTEMSpectrum"], [17, 1, 1, "", "EELSSpectrum"], [17, 1, 1, "", "LazyDielectricFunction"], [17, 1, 1, "", "LazyEDSSEMSpectrum"], [17, 1, 1, "", "LazyEDSSpectrum"], [17, 1, 1, "", "LazyEDSTEMSpectrum"], [17, 1, 1, "", "LazyEELSSpectrum"]], "exspy.signals.DielectricFunction": [[17, 2, 1, "", "get_electron_energy_loss_spectrum"], [17, 2, 1, "", "get_number_of_effective_electrons"]], "exspy.signals.EDSSEMSpectrum": [[17, 2, 1, "", "create_model"], [17, 2, 1, "", "get_calibration_from"], [17, 2, 1, "", "set_microscope_parameters"]], "exspy.signals.EDSSpectrum": [[17, 2, 1, "", "add_elements"], [17, 2, 1, "", "add_lines"], [17, 2, 1, "", "add_xray_lines_markers"], [17, 2, 1, "", "estimate_background_windows"], [17, 2, 1, "", "estimate_integration_windows"], [17, 2, 1, "", "get_lines_intensity"], [17, 2, 1, "", "get_take_off_angle"], [17, 2, 1, "", "plot"], [17, 2, 1, "", "rebin"], [17, 2, 1, "", "remove_xray_lines_markers"], [17, 2, 1, "", "set_elements"], [17, 2, 1, "", "set_lines"], [17, 2, 1, "", "sum"]], "exspy.signals.EDSTEMSpectrum": [[17, 2, 1, "", "CL_get_mass_thickness"], [17, 2, 1, "", "create_model"], [17, 2, 1, "", "decomposition"], [17, 2, 1, "", "get_calibration_from"], [17, 2, 1, "", "get_probe_area"], [17, 2, 1, "", "quantification"], [17, 2, 1, "", "set_microscope_parameters"], [17, 2, 1, "", "vacuum_mask"]], "exspy.signals.EELSSpectrum": [[17, 2, 1, "", "add_elements"], [17, 2, 1, "", "align_zero_loss_peak"], [17, 2, 1, "", "create_model"], [17, 2, 1, "", "edges_at_energy"], [17, 2, 1, "", "estimate_elastic_scattering_intensity"], [17, 2, 1, "", "estimate_elastic_scattering_threshold"], [17, 2, 1, "", "estimate_thickness"], [17, 2, 1, "", "estimate_zero_loss_peak_centre"], [17, 2, 1, "", "fourier_log_deconvolution"], [17, 2, 1, "", "fourier_ratio_deconvolution"], [17, 2, 1, "", "generate_subshells"], [17, 2, 1, "", "get_zero_loss_peak_mask"], [17, 2, 1, "", "kramers_kronig_analysis"], [17, 2, 1, "", "plot"], [17, 2, 1, "", "power_law_extrapolation"], [17, 2, 1, "", "print_edges_near_energy"], [17, 2, 1, "", "rebin"], [17, 2, 1, "", "richardson_lucy_deconvolution"], [17, 2, 1, "", "set_microscope_parameters"], [17, 2, 1, "", "spikes_diagnosis"], [17, 2, 1, "", "spikes_removal_tool"], [17, 2, 1, "", "vacuum_mask"]]}, "objtypes": {"0": "py:module", "1": "py:class", "2": "py:method", "3": "py:attribute", "4": "py:property", "5": "py:function"}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "class", "Python class"], "2": ["py", "method", "Python method"], "3": ["py", "attribute", "Python attribute"], "4": ["py", "property", "Python property"], "5": ["py", "function", "Python function"]}, "titleterms": {"galleri": 0, "exampl": 0, "model": [0, 2, 16, 22], "fit": [0, 1, 2, 5, 21, 22], "eel": [1, 22, 25], "curv": [1, 21, 22], "plot": [3, 21], "residu": 3, "comput": [4, 6, 18, 20], "time": [4, 6, 18], "simpl": 5, "arctan": 5, "changelog": 7, "unreleas": 7, "2024": 7, "02": 7, "16": 7, "improv": 7, "document": [7, 9, 10, 11], "mainten": 7, "0": 7, "1": [7, 24], "2023": 7, "12": 7, "03": 7, "new": [7, 9, 24], "featur": 7, "enhanc": 7, "initi": 7, "10": 7, "28": 7, "cite": [8, 10, 11], "exspi": [8, 10, 11, 12, 13, 15, 16, 17, 25], "contribut": 9, "issu": 9, "pull": 9, "request": 9, "review": 9, "code": 9, "style": 9, "write": 9, "test": 9, "releas": 9, "version": 9, "welcom": [10, 11], "learn": [10, 11], "resourc": [10, 11], "citat": [10, 11], "scientif": [10, 11], "literatur": [10, 11], "licens": [10, 11], "compon": 12, "data": [13, 21, 22], "refer": 14, "materi": 15, "signal": [17, 20, 25], "bibliographi": 19, "dielectr": 20, "function": 20, "tool": [20, 22], "number": 20, "effect": 20, "electron": [20, 21, 22], "energi": [20, 21, 22], "loss": [20, 22], "dispers": 21, "x": 21, "rai": 21, "spectrometri": 21, "ed": [21, 25], "spectrum": 21, "load": 21, "paramet": 21, "microscop": 21, "detector": [21, 25], "axi": 21, "copi": 21, "calibr": 21, "describ": 21, "sampl": [21, 22, 25], "element": [21, 22], "line": 21, "databas": 21, "find": 21, "from": 21, "get": [21, 24], "intens": [21, 22], "an": 21, "background": 21, "subtract": 21, "quantif": 21, "absorpt": 21, "correct": 21, "util": 21, "mass": 21, "coeffici": 21, "rang": 21, "spectroscopi": 22, "analysi": 22, "composit": 22, "thick": 22, "estim": 22, "zero": 22, "peak": 22, "centr": 22, "align": 22, "deconvolut": 22, "elast": 22, "scatter": 22, "kramer": 22, "kronig": 22, "creat": [22, 24], "generalis": 22, "oscil": 22, "strength": 22, "fine": 22, "structur": [22, 25], "user": 23, "guid": 23, "instal": 24, "us": 24, "conda": 24, "environ": 24, "2": 24, "packag": 24, "3": 24, "start": 24, "pip": 24, "updat": 24, "metadata": 25, "gener": 25, "acquisition_instru": 25, "tem": 25, "sem": 25, "stage": 25}, "envversion": {"sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.intersphinx": 1, "sphinx": 60}, "alltitles": {"Gallery of Examples": [[0, "gallery-of-examples"]], "Model fitting": [[0, "model-fitting"], [2, "model-fitting"]], "EELS curve fitting": [[1, "eels-curve-fitting"], [22, "eels-curve-fitting"]], "Plot Residual": [[3, "plot-residual"]], "Computation times": [[4, "computation-times"], [6, "computation-times"], [18, "computation-times"]], "Simple arctan fit": [[5, "simple-arctan-fit"]], "Changelog": [[7, "changelog"]], " [UNRELEASED] (2024-02-16)": [[7, "release-unreleased-2024-02-16"]], "Improved Documentation": [[7, "improved-documentation"]], "Maintenance": [[7, "maintenance"], [7, "id5"]], "0.1 (2023-12-03)": [[7, "id3"]], "New features": [[7, "new-features"]], "Enhancements": [[7, "enhancements"]], "Initiation (2023-10-28)": [[7, "initiation-2023-10-28"]], "Citing eXSpy": [[8, "citing-exspy"], [10, "citing-exspy"], [11, "citing-exspy"]], "Contributing": [[9, "contributing"]], "Issues": [[9, "issues"]], "Pull Requests": [[9, "pull-requests"]], "Reviewing": [[9, "reviewing"]], "Documentation": [[9, "documentation"]], "Code style": [[9, "code-style"]], "Writing tests": [[9, "writing-tests"]], "Releasing a new version": [[9, "releasing-a-new-version"]], "Welcome to the documentation of eXSpy!": [[10, "welcome-to-the-documentation-of-exspy"], [11, "welcome-to-the-documentation-of-exspy"]], "Learning resources": [[10, "learning-resources"], [11, "learning-resources"]], "Citation in the scientific literature": [[10, "citation-in-the-scientific-literature"], [11, "citation-in-the-scientific-literature"]], "License": [[10, "license"], [11, "license"]], "exspy.components": [[12, "exspy-components"]], "exspy.data": [[13, "exspy-data"]], "Reference": [[14, "reference"], [14, null]], "exspy.material": [[15, "exspy-material"]], "exspy.models": [[16, "exspy-models"]], "exspy.signals": [[17, "exspy-signals"]], "Bibliography": [[19, "bibliography"]], "Dielectric function tools": [[20, "dielectric-function-tools"]], "Number of effective electrons": [[20, "number-of-effective-electrons"]], "Compute the electron energy-loss signal": [[20, "compute-the-electron-energy-loss-signal"]], "Energy-Dispersive X-ray Spectrometry (EDS)": [[21, "energy-dispersive-x-ray-spectrometry-eds"]], "Spectrum loading and parameters": [[21, "spectrum-loading-and-parameters"]], "Loading data": [[21, "loading-data"]], "Microscope and detector parameters": [[21, "microscope-and-detector-parameters"]], "Energy axis": [[21, "energy-axis"]], "Copying spectrum calibration": [[21, "copying-spectrum-calibration"]], "Describing the sample": [[21, "describing-the-sample"]], "Elements": [[21, "elements"]], "X-ray lines": [[21, "x-ray-lines"]], "Elemental database": [[21, "elemental-database"]], "Finding elements from energy": [[21, "finding-elements-from-energy"]], "Plotting": [[21, "plotting"]], "Plotting X-ray lines": [[21, "plotting-x-ray-lines"]], "Getting the intensity of an X-ray line": [[21, "getting-the-intensity-of-an-x-ray-line"]], "Background subtraction": [[21, "background-subtraction"]], "EDS curve fitting": [[21, "eds-curve-fitting"]], "EDS Quantification": [[21, "eds-quantification"]], "Absorption Correction": [[21, "absorption-correction"]], "Utils": [[21, "utils"]], "Mass absorption coefficient database": [[21, "mass-absorption-coefficient-database"]], "Electron and X-ray range": [[21, "electron-and-x-ray-range"]], "Electron Energy Loss Spectroscopy": [[22, "electron-energy-loss-spectroscopy"]], "Tools for EELS data analysis": [[22, "tools-for-eels-data-analysis"]], "Elemental composition of the sample": [[22, "elemental-composition-of-the-sample"]], "Thickness estimation": [[22, "thickness-estimation"]], "Zero-loss peak centre and alignment": [[22, "zero-loss-peak-centre-and-alignment"]], "Deconvolutions": [[22, "deconvolutions"]], "Estimate elastic scattering intensity": [[22, "estimate-elastic-scattering-intensity"]], "Kramers-Kronig Analysis": [[22, "kramers-kronig-analysis"]], "Creating model": [[22, "creating-model"]], "Generalised Oscillator Strengths": [[22, "generalised-oscillator-strengths"]], "Fitting model": [[22, "fitting-model"]], "Fine structure analysis": [[22, "fine-structure-analysis"], [22, "id1"]], "User Guide": [[23, "user-guide"]], "Installation": [[24, "installation"]], "Installation using conda": [[24, "installation-using-conda"]], "1. Creating a conda environment": [[24, "creating-a-conda-environment"]], "2. Installing the package in the new environment": [[24, "installing-the-package-in-the-new-environment"]], "3. Getting Started": [[24, "getting-started"]], "Installation using pip": [[24, "installation-using-pip"]], "Updating the package": [[24, "updating-the-package"]], "eXSpy Metadata Structure": [[25, "exspy-metadata-structure"]], "General": [[25, "general"]], "Sample": [[25, "sample"]], "Signal": [[25, "signal"]], "Acquisition_instrument": [[25, "acquisition-instrument"]], "TEM": [[25, "tem"]], "SEM": [[25, "sem"]], "Stage": [[25, "stage"]], "Detector": [[25, "detector"]], "EELS": [[25, "eels"]], "EDS": [[25, "eds"]]}, "indexentries": {"doublepowerlaw (class in exspy.components)": [[12, "exspy.components.DoublePowerLaw"]], "eelsarctan (class in exspy.components)": [[12, "exspy.components.EELSArctan"]], "eelscledge (class in exspy.components)": [[12, "exspy.components.EELSCLEdge"]], "pesvoigt (class in exspy.components)": [[12, "exspy.components.PESVoigt"]], "see (class in exspy.components)": [[12, "exspy.components.SEE"]], "vignetting (class in exspy.components)": [[12, "exspy.components.Vignetting"]], "volumeplasmondrude (class in exspy.components)": [[12, "exspy.components.VolumePlasmonDrude"]], "as_dictionary() (exspy.components.eelscledge method)": [[12, "exspy.components.EELSCLEdge.as_dictionary"]], "estimate_parameters() (exspy.components.pesvoigt method)": [[12, "exspy.components.PESVoigt.estimate_parameters"]], "exspy.components": [[12, "module-exspy.components"]], "fine_structure_smoothing (exspy.components.eelscledge property)": [[12, "exspy.components.EELSCLEdge.fine_structure_smoothing"]], "fix_fine_structure() (exspy.components.eelscledge method)": [[12, "exspy.components.EELSCLEdge.fix_fine_structure"]], "free_fine_structure() (exspy.components.eelscledge method)": [[12, "exspy.components.EELSCLEdge.free_fine_structure"]], "function() (exspy.components.eelscledge method)": [[12, "exspy.components.EELSCLEdge.function"]], "function_nd() (exspy.components.doublepowerlaw method)": [[12, "exspy.components.DoublePowerLaw.function_nd"]], "get_fine_structure_as_signal1d() (exspy.components.eelscledge method)": [[12, "exspy.components.EELSCLEdge.get_fine_structure_as_signal1D"]], "gui() (exspy.components.eelscledge method)": [[12, "exspy.components.EELSCLEdge.gui"]], "left_cutoff (exspy.components.doublepowerlaw attribute)": [[12, "exspy.components.DoublePowerLaw.left_cutoff"]], "module": [[12, "module-exspy.components"], [13, "module-exspy.data"], [15, "module-exspy.material"], [16, "module-exspy.models"], [17, "module-exspy.signals"]], "set_microscope_parameters() (exspy.components.eelscledge method)": [[12, "exspy.components.EELSCLEdge.set_microscope_parameters"]], "eds_sem_tm002() (in module exspy.data)": [[13, "exspy.data.EDS_SEM_TM002"]], "eds_tem_fept_nanoparticles() (in module exspy.data)": [[13, "exspy.data.EDS_TEM_FePt_nanoparticles"]], "eels_mnfe() (in module exspy.data)": [[13, "exspy.data.EELS_MnFe"]], "eels_low_loss() (in module exspy.data)": [[13, "exspy.data.EELS_low_loss"]], "eelsdb() (in module exspy.data)": [[13, "exspy.data.eelsdb"]], "exspy.data": [[13, "module-exspy.data"]], "atomic_to_weight() (in module exspy.material)": [[15, "exspy.material.atomic_to_weight"]], "density_of_mixture() (in module exspy.material)": [[15, "exspy.material.density_of_mixture"]], "exspy.material": [[15, "module-exspy.material"]], "mass_absorption_coefficient() (in module exspy.material)": [[15, "exspy.material.mass_absorption_coefficient"]], "mass_absorption_mixture() (in module exspy.material)": [[15, "exspy.material.mass_absorption_mixture"]], "weight_to_atomic() (in module exspy.material)": [[15, "exspy.material.weight_to_atomic"]], "edsmodel (class in exspy.models)": [[16, "exspy.models.EDSModel"]], "edssemmodel (class in exspy.models)": [[16, "exspy.models.EDSSEMModel"]], "edstemmodel (class in exspy.models)": [[16, "exspy.models.EDSTEMModel"]], "eelsmodel (class in exspy.models)": [[16, "exspy.models.EELSModel"]], "add_family_lines() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.add_family_lines"]], "add_polynomial_background() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.add_polynomial_background"]], "append() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.append"]], "as_dictionary() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.as_dictionary"]], "calibrate_energy_axis() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.calibrate_energy_axis"]], "calibrate_xray_lines() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.calibrate_xray_lines"]], "disable_background() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.disable_background"]], "disable_edges() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.disable_edges"]], "disable_fine_structure() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.disable_fine_structure"]], "disable_free_onset_energy() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.disable_free_onset_energy"]], "disable_xray_lines() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.disable_xray_lines"]], "enable_background() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.enable_background"]], "enable_edges() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.enable_edges"]], "enable_fine_structure() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.enable_fine_structure"]], "enable_free_onset_energy() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.enable_free_onset_energy"]], "enable_xray_lines() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.enable_xray_lines"]], "exspy.models": [[16, "module-exspy.models"]], "fit() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.fit"]], "fit_background() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.fit_background"]], "fit_background() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.fit_background"]], "fix_background() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.fix_background"]], "fix_edges() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.fix_edges"]], "fix_fine_structure() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.fix_fine_structure"]], "fix_sub_xray_lines_weight() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.fix_sub_xray_lines_weight"]], "fix_xray_lines_energy() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.fix_xray_lines_energy"]], "fix_xray_lines_width() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.fix_xray_lines_width"]], "free_background() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.free_background"]], "free_edges() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.free_edges"]], "free_fine_structure() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.free_fine_structure"]], "free_sub_xray_lines_weight() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.free_sub_xray_lines_weight"]], "free_xray_lines_energy() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.free_xray_lines_energy"]], "free_xray_lines_width() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.free_xray_lines_width"]], "get_lines_intensity() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.get_lines_intensity"]], "quantify() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.quantify"]], "remove() (exspy.models.edsmodel method)": [[16, "exspy.models.EDSModel.remove"]], "remove() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.remove"]], "remove_fine_structure_data() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.remove_fine_structure_data"]], "resolve_fine_structure() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.resolve_fine_structure"]], "resume_auto_fine_structure_width() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.resume_auto_fine_structure_width"]], "set_all_edges_intensities_positive() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.set_all_edges_intensities_positive"]], "set_convolution_axis() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.set_convolution_axis"]], "signal (exspy.models.eelsmodel property)": [[16, "exspy.models.EELSModel.signal"]], "smart_fit() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.smart_fit"]], "suspend_auto_fine_structure_width() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.suspend_auto_fine_structure_width"]], "two_area_background_estimation() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.two_area_background_estimation"]], "unset_all_edges_intensities_positive() (exspy.models.eelsmodel method)": [[16, "exspy.models.EELSModel.unset_all_edges_intensities_positive"]], "cl_get_mass_thickness() (exspy.signals.edstemspectrum static method)": [[17, "exspy.signals.EDSTEMSpectrum.CL_get_mass_thickness"]], "dielectricfunction (class in exspy.signals)": [[17, "exspy.signals.DielectricFunction"]], "edssemspectrum (class in exspy.signals)": [[17, "exspy.signals.EDSSEMSpectrum"]], "edsspectrum (class in exspy.signals)": [[17, "exspy.signals.EDSSpectrum"]], "edstemspectrum (class in exspy.signals)": [[17, "exspy.signals.EDSTEMSpectrum"]], "eelsspectrum (class in exspy.signals)": [[17, "exspy.signals.EELSSpectrum"]], "lazydielectricfunction (class in exspy.signals)": [[17, "exspy.signals.LazyDielectricFunction"]], "lazyedssemspectrum (class in exspy.signals)": [[17, "exspy.signals.LazyEDSSEMSpectrum"]], "lazyedsspectrum (class in exspy.signals)": [[17, "exspy.signals.LazyEDSSpectrum"]], "lazyedstemspectrum (class in exspy.signals)": [[17, "exspy.signals.LazyEDSTEMSpectrum"]], "lazyeelsspectrum (class in exspy.signals)": [[17, "exspy.signals.LazyEELSSpectrum"]], "add_elements() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.add_elements"]], "add_elements() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.add_elements"]], "add_lines() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.add_lines"]], "add_xray_lines_markers() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.add_xray_lines_markers"]], "align_zero_loss_peak() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.align_zero_loss_peak"]], "create_model() (exspy.signals.edssemspectrum method)": [[17, "exspy.signals.EDSSEMSpectrum.create_model"]], "create_model() (exspy.signals.edstemspectrum method)": [[17, "exspy.signals.EDSTEMSpectrum.create_model"]], "create_model() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.create_model"]], "decomposition() (exspy.signals.edstemspectrum method)": [[17, "exspy.signals.EDSTEMSpectrum.decomposition"]], "edges_at_energy() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.edges_at_energy"]], "estimate_background_windows() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.estimate_background_windows"]], "estimate_elastic_scattering_intensity() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.estimate_elastic_scattering_intensity"]], "estimate_elastic_scattering_threshold() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.estimate_elastic_scattering_threshold"]], "estimate_integration_windows() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.estimate_integration_windows"]], "estimate_thickness() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.estimate_thickness"]], "estimate_zero_loss_peak_centre() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.estimate_zero_loss_peak_centre"]], "exspy.signals": [[17, "module-exspy.signals"]], "fourier_log_deconvolution() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.fourier_log_deconvolution"]], "fourier_ratio_deconvolution() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.fourier_ratio_deconvolution"]], "generate_subshells() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.generate_subshells"]], "get_calibration_from() (exspy.signals.edssemspectrum method)": [[17, "exspy.signals.EDSSEMSpectrum.get_calibration_from"]], "get_calibration_from() (exspy.signals.edstemspectrum method)": [[17, "exspy.signals.EDSTEMSpectrum.get_calibration_from"]], "get_electron_energy_loss_spectrum() (exspy.signals.dielectricfunction method)": [[17, "exspy.signals.DielectricFunction.get_electron_energy_loss_spectrum"]], "get_lines_intensity() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.get_lines_intensity"]], "get_number_of_effective_electrons() (exspy.signals.dielectricfunction method)": [[17, "exspy.signals.DielectricFunction.get_number_of_effective_electrons"]], "get_probe_area() (exspy.signals.edstemspectrum method)": [[17, "exspy.signals.EDSTEMSpectrum.get_probe_area"]], "get_take_off_angle() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.get_take_off_angle"]], "get_zero_loss_peak_mask() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.get_zero_loss_peak_mask"]], "kramers_kronig_analysis() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.kramers_kronig_analysis"]], "plot() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.plot"]], "plot() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.plot"]], "power_law_extrapolation() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.power_law_extrapolation"]], "print_edges_near_energy() (exspy.signals.eelsspectrum static method)": [[17, "exspy.signals.EELSSpectrum.print_edges_near_energy"]], "quantification() (exspy.signals.edstemspectrum method)": [[17, "exspy.signals.EDSTEMSpectrum.quantification"]], "rebin() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.rebin"]], "rebin() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.rebin"]], "remove_xray_lines_markers() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.remove_xray_lines_markers"]], "richardson_lucy_deconvolution() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.richardson_lucy_deconvolution"]], "set_elements() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.set_elements"]], "set_lines() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.set_lines"]], "set_microscope_parameters() (exspy.signals.edssemspectrum method)": [[17, "exspy.signals.EDSSEMSpectrum.set_microscope_parameters"]], "set_microscope_parameters() (exspy.signals.edstemspectrum method)": [[17, "exspy.signals.EDSTEMSpectrum.set_microscope_parameters"]], "set_microscope_parameters() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.set_microscope_parameters"]], "spikes_diagnosis() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.spikes_diagnosis"]], "spikes_removal_tool() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.spikes_removal_tool"]], "sum() (exspy.signals.edsspectrum method)": [[17, "exspy.signals.EDSSpectrum.sum"]], "vacuum_mask() (exspy.signals.edstemspectrum method)": [[17, "exspy.signals.EDSTEMSpectrum.vacuum_mask"]], "vacuum_mask() (exspy.signals.eelsspectrum method)": [[17, "exspy.signals.EELSSpectrum.vacuum_mask"]]}})
\ No newline at end of file
diff --git a/sg_execution_times.html b/sg_execution_times.html
index fbea7475e..c546f94c5 100644
--- a/sg_execution_times.html
+++ b/sg_execution_times.html
@@ -440,7 +440,7 @@
                   
   <section id="computation-times">
 <span id="sphx-glr-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Link to this heading">#</a></h1>
-<p><strong>00:10.141</strong> total execution time for 3 files <strong>from all galleries</strong>:</p>
+<p><strong>00:09.993</strong> total execution time for 3 files <strong>from all galleries</strong>:</p>
 <div class="docutils container">
 <style scoped>
 <link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
@@ -462,11 +462,11 @@
 </thead>
 <tbody>
 <tr class="row-even"><td><p><a class="reference internal" href="auto_examples/model_fitting/EELS_curve_fitting.html#sphx-glr-auto-examples-model-fitting-eels-curve-fitting-py"><span class="std std-ref">EELS curve fitting</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/model_fitting/EELS_curve_fitting.py</span></code>)</p></td>
-<td><p>00:09.275</p></td>
+<td><p>00:09.033</p></td>
 <td><p>0.0</p></td>
 </tr>
 <tr class="row-odd"><td><p><a class="reference internal" href="auto_examples/model_fitting/plot_residual.html#sphx-glr-auto-examples-model-fitting-plot-residual-py"><span class="std std-ref">Plot Residual</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/model_fitting/plot_residual.py</span></code>)</p></td>
-<td><p>00:00.505</p></td>
+<td><p>00:00.598</p></td>
 <td><p>0.0</p></td>
 </tr>
 <tr class="row-even"><td><p><a class="reference internal" href="auto_examples/model_fitting/simple_arctan_fit.html#sphx-glr-auto-examples-model-fitting-simple-arctan-fit-py"><span class="std std-ref">Simple arctan fit</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/model_fitting/simple_arctan_fit.py</span></code>)</p></td>