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Rendering report with 10000 samples is unusable #68

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sverhoeven opened this issue Jan 26, 2024 · 2 comments
Open

Rendering report with 10000 samples is unusable #68

sverhoeven opened this issue Jan 26, 2024 · 2 comments

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@sverhoeven
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I ran the following workflow


run_dir = 'output'
mode = 'local'
molecules = [
  'data/1NX1_protein.pdb',
  'data/DAIDALSSDFT_3conformations.pdb',
]
postprocess = true
clean = true

[topoaa]

autohis = false

[topoaa.mol1]

nhisd = 2
hisd_1 = 36
hisd_2 = 109
nhise = 1
hise_1 = 113

[rigidbody]

tolerance = 5
ambig_fname = 'data/ambig.tbl'
sampling = 10000

[caprieval]

reference_fname = 'data/1nx1_refe.pdb'

[clustfcc]

['caprieval.1']

reference_fname = 'data/1nx1_refe.pdb'

[contactmap]

When I visit http://localhost:3000/jobs/16/report the page renders slowly, but after some time I get an out of memory error from Chrome browser.

@amjjbonvin
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amjjbonvin commented Jan 26, 2024 via email

@sverhoeven
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This was for the following caprieval report
report.html.gz

I think disabling the interactivity or not drawing cluster with rank>10 would help.

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