From 7e1d0e50ae088a5d9fdd6ebca7b71de85fc8c579 Mon Sep 17 00:00:00 2001
From: Stefan Verhoeven <stefan.verhoeven@gmail.com>
Date: Wed, 9 Oct 2024 16:04:58 +0200
Subject: [PATCH 1/2] Do not treat `[topoaa.mol1]` as a module

---
 CHANGELOG.md                   |  6 ++++++
 packages/core/package.json     |  2 +-
 packages/core/src/toml.test.ts | 17 +++++++++++++++++
 packages/core/src/toml.ts      |  5 ++++-
 4 files changed, 28 insertions(+), 2 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index f4d50f9..6802605 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -6,6 +6,12 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## Unreleased
 
+## @i-vresse/wb-core 3.2.3 - 2024-10-09
+
+### Fixed
+
+- Do not treat `[topoaa.mol1]` as a module
+
 ## @i-vresse/wb-core 3.2.2 - 2024-10-09
 
 ### Added
diff --git a/packages/core/package.json b/packages/core/package.json
index 9d114a4..ce036ae 100644
--- a/packages/core/package.json
+++ b/packages/core/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@i-vresse/wb-core",
-  "version": "3.2.2",
+  "version": "3.2.3",
   "description": "React components to construct a workflow builder application",
   "keywords": [
     "react",
diff --git a/packages/core/src/toml.test.ts b/packages/core/src/toml.test.ts
index 3f54cad..9b2234c 100644
--- a/packages/core/src/toml.test.ts
+++ b/packages/core/src/toml.test.ts
@@ -1112,4 +1112,21 @@ describe('lines2node()', () => {
     const expected = [-1, -1, -1, -1, -1, 0, 0, 1]
     expect(lookup).toEqual(expected)
   })
+
+  it('given 2 sections', () => {
+    const workflow = [
+      '',
+      'molecules = [',
+      ']',
+      '',
+      '[section1]',
+      '',
+      '[section1.mol1]'
+    ].join('\n')
+
+    const lookup = lines2node(workflow)
+
+    const expected = [-1, -1, -1, -1, -1, 0, 0, 0]
+    expect(lookup).toEqual(expected)
+  })
 })
diff --git a/packages/core/src/toml.ts b/packages/core/src/toml.ts
index 16e8800..60b6007 100644
--- a/packages/core/src/toml.ts
+++ b/packages/core/src/toml.ts
@@ -309,6 +309,8 @@ export function dedupWorkflow (inp: string): string {
  * For each line in the text, return the node index.
  * -1 for global parameters.
  *
+ * Ignores table with dots in the name.
+ *
  * @param text The TOML text
  * @returns
  */
@@ -320,7 +322,8 @@ export function lines2node (text: string): number[] {
   const isTable = /^\[/
   for (let i = 0; i < lines.length; i++) {
     const line = lines[i]
-    if (isTable.test(line)) {
+    if (isTable.test(line) && !line.includes('.')
+    ) {
       nodeIndex++
     }
     nodeLines.push(nodeIndex)

From 04fd2ad6e355f4116b62a2c15b6841ee683d824b Mon Sep 17 00:00:00 2001
From: Stefan Verhoeven <stefan.verhoeven@gmail.com>
Date: Wed, 9 Oct 2024 16:10:05 +0200
Subject: [PATCH 2/2] No need for regex

---
 packages/core/src/toml.ts | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/packages/core/src/toml.ts b/packages/core/src/toml.ts
index 60b6007..0d15a76 100644
--- a/packages/core/src/toml.ts
+++ b/packages/core/src/toml.ts
@@ -319,11 +319,9 @@ export function lines2node (text: string): number[] {
   // highlighter linenumber starts with 1 so add offset
   const nodeLines: number[] = [-1]
   let nodeIndex = -1
-  const isTable = /^\[/
   for (let i = 0; i < lines.length; i++) {
     const line = lines[i]
-    if (isTable.test(line) && !line.includes('.')
-    ) {
+    if (line.startsWith('[') && !line.includes('.')) {
       nodeIndex++
     }
     nodeLines.push(nodeIndex)