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history.qmd
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---
title: "Project History"
---
## 2024
### October
Updating all pkgdown websites to opt in Bootstrap 5 (in progress).
* See the pkgdown 2.0.0 and Bootstrap 5 announcement [here](https://pkgdown.r-lib.org/#pkgdown-200-and-bootstrap-5).
* Restores the floating table of contents on the right in the articles of the pkgdown sites.
Bumped version of all iSEE extension packages.
* Necessary to force the re-installation of those packages
and the propagation of new slots in the `iSEE::DotPlot` class to
all the relevant extension packages.
### September
Two-day hackathon at the European Bioconductor conference 2024 (Oxford, UK).
* Resolved a considerable number of outstanding issues across all packages.
## 2023
### September
[iSEEpathways](https://bioconductor.org/packages/iSEEpathways/) software package [accepted](https://github.com/Bioconductor/Contributions/issues/3133) in Bioconductor.
* Adds panels for the visualisation of gene set analyses.
[iSEEde](https://bioconductor.org/packages/iSEEde/) software package [accepted](https://github.com/Bioconductor/Contributions/issues/3065) in Bioconductor.
* Adds panels for the visualisation of differential expression analyses.
### July
[iSEEindex](https://bioconductor.org/packages/iSEEindex/) software package [accepted](https://github.com/Bioconductor/Contributions/issues/3064) in Bioconductor.
* Adds a landing page for listing custom sets of data sets and configurations accessible locally or online.
## 2022
### September
[iSEEhub](https://bioconductor.org/packages/iSEEhub/) software package [accepted](https://github.com/Bioconductor/Contributions/issues/2749) in Bioconductor.
* Adds a landing page for listing data sets available in the Bioconductor [ExperimentHub](https://bioconductor.org/packages/ExperimentHub/).
### June
[iSEEhex](https://bioconductor.org/packages/iSEEhex/) software package [accepted](https://github.com/Bioconductor/Contributions/issues/2686) in Bioconductor.
* Adds panels for summarising scatter plots with hexagonal bins.
## 2021
*In construction*
## 2020
### April
Release of iSEE version [2.0.0](https://github.com/iSEE/iSEE/commit/0d82c2a9bb108592c3d1a4e79299112c1140a942), following a refactoring of panel implementation as S4 classes.
* Opens the door to third-party implementations of panels in extension packages.
[iSEEu](https://bioconductor.org/packages/iSEEu/) software package [accepted](https://github.com/Bioconductor/Contributions/issues/1425) in Bioconductor.
* Adds panels for miscellaneous functionality, demonstrating the implementation of panel in extension packages.
## 2019
### April
*iSEE* wins the [Most technically impressive](https://posit.co/blog/first-shiny-contest-winners/) prize of the [1st Shiny Contest](https://posit.co/blog/first-shiny-contest/) organised by RStudio Inc.
## 2018
### June
[iSEE: Interactive SummarizedExperiment Explorer](https://f1000research.com/articles/7-741) published in F1000 Research.
### March
[iSEE](https://bioconductor.org/packages/iSEE/) software package [accepted](https://github.com/Bioconductor/Contributions/issues/678) in Bioconductor.
## 2017
### December
First substantial [commit](https://github.com/iSEE/iSEE/tree/021e3e20cfdb194e511f8097ed544329bd46bcd6) to the *iSEE* repository, when proposals for iSEE functionality were fleshed out during [EuroBioC2017](https://github.com/Bioconductor/EuroBioc2017) (Cambridge, UK).