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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(.getAcceptableAveAbFields)
export(.getAcceptableLogFCFields)
export(.getAcceptablePValueFields)
export(.getGeneSetCommands)
export(.getIdentifierType)
export(.getOrganism)
export(.setAcceptableAveAbFields)
export(.setAcceptableLogFCFields)
export(.setAcceptablePValueFields)
export(.setGeneSetCommands)
export(.setIdentifierType)
export(.setOrganism)
export(AggregatedDotPlot)
export(DifferentialStatisticsTable)
export(DynamicMarkerTable)
export(DynamicReducedDimensionPlot)
export(FeatureSetTable)
export(GeneSetTable)
export(LogFCLogFCPlot)
export(MAPlot)
export(MarkdownBoard)
export(VolcanoPlot)
export(createGeneSetCommands)
export(getAveAbFields)
export(getAveAbPattern)
export(getAveAbPatterns)
export(getFeatureSetCollections)
export(getFeatureSetCommands)
export(getLogFCFields)
export(getLogFCPattern)
export(getLogFCPatterns)
export(getPValueFields)
export(getPValuePattern)
export(getPValuePatterns)
export(getTableExtraFields)
export(modeEmpty)
export(modeGating)
export(modeReducedDim)
export(registerAveAbFields)
export(registerAveAbPatterns)
export(registerFeatureSetCollections)
export(registerFeatureSetCommands)
export(registerLogFCFields)
export(registerLogFCPatterns)
export(registerPValueFields)
export(registerPValuePatterns)
export(setAveAbPattern)
export(setFeatureSetCommands)
export(setLogFCPattern)
export(setPValuePattern)
export(setTableExtraFields)
exportClasses(AggregatedDotPlot)
exportClasses(DynamicMarkerTable)
exportClasses(DynamicReducedDimensionPlot)
exportClasses(FeatureSetTable)
exportClasses(GeneSetTable)
exportClasses(LogFCLogFCPlot)
exportClasses(MAPlot)
exportClasses(MarkdownBoard)
exportClasses(VolcanoPlot)
exportMethods(.allowableXAxisChoices)
exportMethods(.allowableYAxisChoices)
exportMethods(.cacheCommonInfo)
exportMethods(.colorByNoneDotPlotField)
exportMethods(.colorByNoneDotPlotScale)
exportMethods(.createObservers)
exportMethods(.defineDataInterface)
exportMethods(.defineInterface)
exportMethods(.defineOutput)
exportMethods(.definePanelTour)
exportMethods(.exportOutput)
exportMethods(.fullName)
exportMethods(.generateDotPlot)
exportMethods(.generateDotPlotData)
exportMethods(.generateOutput)
exportMethods(.generateTable)
exportMethods(.getDotPlotColorHelp)
exportMethods(.hideInterface)
exportMethods(.multiSelectionActive)
exportMethods(.multiSelectionAvailable)
exportMethods(.multiSelectionClear)
exportMethods(.multiSelectionCommands)
exportMethods(.multiSelectionDimension)
exportMethods(.multiSelectionInvalidated)
exportMethods(.panelColor)
exportMethods(.prioritizeDotPlotData)
exportMethods(.refineParameters)
exportMethods(.renderOutput)
exportMethods(initialize)
import(iSEE)
import(methods)
importClassesFrom(IRanges,CharacterList)
importFrom(DT,dataTableOutput)
importFrom(DT,dataTableProxy)
importFrom(DT,datatable)
importFrom(DT,renderDataTable)
importFrom(DT,selectRows)
importFrom(S4Vectors,isSingleString)
importFrom(S4Vectors,mcols)
importFrom(S4Vectors,metadata)
importFrom(S4Vectors,setValidity2)
importFrom(SingleCellExperiment,colData)
importFrom(SingleCellExperiment,reducedDimNames)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(colourpicker,colourInput)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,scale_color_gradient)
importFrom(ggplot2,scale_color_gradient2)
importFrom(ggplot2,scale_color_gradientn)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_size)
importFrom(ggplot2,theme)
importFrom(ggplot2,xlab)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(iSEE,ColumnDataPlot)
importFrom(iSEE,FeatureAssayPlot)
importFrom(iSEE,ReducedDimensionPlot)
importFrom(iSEE,RowDataTable)
importFrom(iSEE,iSEE)
importFrom(methods,callNextMethod)
importFrom(methods,is)
importFrom(methods,new)
importFrom(shiny,HTML)
importFrom(shiny,actionButton)
importFrom(shiny,br)
importFrom(shiny,checkboxGroupInput)
importFrom(shiny,checkboxInput)
importFrom(shiny,hr)
importFrom(shiny,modalDialog)
importFrom(shiny,numericInput)
importFrom(shiny,observeEvent)
importFrom(shiny,plotOutput)
importFrom(shiny,radioButtons)
importFrom(shiny,removeModal)
importFrom(shiny,renderPlot)
importFrom(shiny,renderUI)
importFrom(shiny,runApp)
importFrom(shiny,selectInput)
importFrom(shiny,showModal)
importFrom(shiny,showNotification)
importFrom(shiny,span)
importFrom(shiny,tagList)
importFrom(shiny,uiOutput)
importFrom(shinyAce,aceEditor)
importFrom(stats,p.adjust)
importFrom(stats,p.adjust.methods)