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DESCRIPTION
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Type: Package
Package: msigdbr
Title: MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format
Version: 9.0.0.9000
Authors@R:
person("Igor", "Dolgalev", , "[email protected]", role = c("aut", "cre"),
comment = c(ORCID = "0000-0003-4451-126X"))
Description: Provides the 'Molecular Signatures Database' (MSigDB) gene
sets typically used with the 'Gene Set Enrichment Analysis' (GSEA)
software (Subramanian et al. 2005 <doi:10.1073/pnas.0506580102>,
Liberzon et al. 2015 <doi:10.1016/j.cels.2015.12.004>, Castanza et al.
2023 <doi:10.1038/s41592-023-02014-7>) as an R data frame. The package
includes the human genes as listed in MSigDB as well as the
corresponding symbols and IDs for frequently studied model organisms
such as mouse, rat, pig, fly, and yeast.
License: MIT + file LICENSE
URL: https://igordot.github.io/msigdbr/
BugReports: https://github.com/igordot/msigdbr/issues
Depends:
R (>= 4.1)
Imports:
babelgene (>= 22.9),
dplyr (>= 1.1.1),
lifecycle,
methods,
rlang,
tibble,
tidyselect (>= 1.2.0)
Suggests:
knitr,
msigdbdf,
rmarkdown,
roxygen2,
testthat
Additional_repositories: https://igordot.r-universe.dev
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2