diff --git a/src/main/java/org/broad/igv/feature/genome/load/FastaGenomeLoader.java b/src/main/java/org/broad/igv/feature/genome/load/FastaGenomeLoader.java index 2664c2c07..ee56bd688 100644 --- a/src/main/java/org/broad/igv/feature/genome/load/FastaGenomeLoader.java +++ b/src/main/java/org/broad/igv/feature/genome/load/FastaGenomeLoader.java @@ -45,12 +45,13 @@ public Genome loadGenome() throws IOException { config.setTwoBitURL(genomePath); } else { - String fastaPath = null; + String fastaPath; String fastaIndexPath; if (genomePath.endsWith(".fai")) { fastaPath = genomePath.substring(0, genomePath.length() - 4); fastaIndexPath = genomePath; } else { + fastaPath = genomePath; fastaIndexPath = genomePath + ".fai"; }