Display unrecognized modifications in popup text

jrobinso · jrobinso · commit c597d32a5ced · 2024-08-31T21:44:40.000-07:00
diff --git a/src/main/java/org/broad/igv/sam/mods/BaseModificationSet.java b/src/main/java/org/broad/igv/sam/mods/BaseModificationSet.java
@@ -53,7 +53,7 @@ public boolean containsPosition(Integer pos) {
     public String valueString(int pos) {
         int l = (int) (100.0 * Byte.toUnsignedInt(likelihoods.get(pos)) / 255);
         return "Base modification: " +
-                ((codeValues.containsKey(modification)) ? codeValues.get(modification) : "Uknown") +  " (" + l + "%)";
+                ((codeValues.containsKey(modification)) ? codeValues.get(modification) : modification) +  " (" + l + "%)";
     }
 
     static Map<String, String> codeValues;

Original file line number	Diff line number	Diff line change
`@@ -53,7 +53,7 @@ public boolean containsPosition(Integer pos) {`
`53`	`53`	`public String valueString(int pos) {`
`54`	`54`	`int l = (int) (100.0 * Byte.toUnsignedInt(likelihoods.get(pos)) / 255);`
`55`	`55`	`return "Base modification: " +`
`56`		`- ((codeValues.containsKey(modification)) ? codeValues.get(modification) : "Uknown") + " (" + l + "%)";`
	`56`	`+ ((codeValues.containsKey(modification)) ? codeValues.get(modification) : modification) + " (" + l + "%)";`
`57`	`57`	`}`
`58`	`58`
`59`	`59`	`static Map<String, String> codeValues;`