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Hi, I have got this error while running the geno process. This happened each time I sent the job on a different chromosome during the processing with the following error:
Progress: 91%|█████████████████████████████████████▎ | ETA: 0:00:16�[KERROR:
LoadError: Progress: 91%|█████████████████████████████████████▎ | ETA: 0:00:16TaskFailedException�[K
Hi, I have got this error while running the geno process. This happened each time I sent the job on a different chromosome during the processing with the following error:
Progress: 91%|█████████████████████████████████████▎ | ETA: 0:00:16�[KERROR:
LoadError: Progress: 91%|█████████████████████████████████████▎ | ETA: 0:00:16TaskFailedException�[K
Stacktrace:
[1] wait
@ ./task.jl:322 [inlined]
[2] threading_run(func::Function)
@ Base.Threads ./threadingconstructs.jl:34
[3] macro expansion
@ ./threadingconstructs.jl:93 [inlined]
[4] get_genostr(batch_ref_df::DataFrame, batchsize::Int64, start_haplotype::Int64, metadata::GenomicMetadata)
@ Main /opt/intervene/scripts/algorithms/genotype/write_output.jl:60
[5] write_to_plink_batch(batch_ref_df::DataFrame, prev_batchsize::Int64, cur_batchsize::Int64, batch_number::Int64, metadata::GenomicMetadata)
@ Main /opt/intervene/scripts/algorithms/genotype/write_output.jl:115
[6] create_synthetic_genotype_for_chromosome(metadata::GenomicMetadata)
@ Main /opt/intervene/scripts/algorithms/genotype/genotype_algorithm.jl:124
[7] create_synthetic_genotype(options::Dict{Any, Any})
@ Main /opt/intervene/scripts/algorithms/genotype/genotype_algorithm.jl:157
[8] macro expansion
@ /opt/intervene/scripts/run_program.jl:31 [inlined]
[9] macro expansion
@ ./timing.jl:287 [inlined]
[10] run_program(pipelines::Dict{String, Bool}, options::Dict{Any, Any})
@ Main /opt/intervene/scripts/run_program.jl:30
[11] main()
@ Main /opt/intervene/scripts/run_program.jl:113
[12] top-level scope
@ /opt/intervene/scripts/run_program.jl:117
in expression starting at /opt/intervene/scripts/run_program.jl:117
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