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DESCRIPTION
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DESCRIPTION
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Package: MetFamily
Type: Package
Title: MetFamily: Discovering Regulated Metabolite Families in Untargeted Metabolomics Studies
Version: 0.99.3
Date: 2024-03-02
Author: c( person("Hendrik", "Treutler, role = c("aut"), email = "[email protected]"),
person("Khabat", "Vahabi, role = c("aut"), email = "[email protected]"),
person(given = "Steffen", family = "Neumann", email = "[email protected]",
role = c("aut", "cre"), comment = c(ORCID = "0000-0002-7899-7192")) )
Depends:
R (>= 3.5.0),
htmltools,
shiny,
shinyBS,
shinyjs,
shinybusy,
DT,
colourpicker,
Matrix,
squash,
FactoMineR,
mixOmics,
pcaMethods,
cba,
cowplot,
gdata,
searchable,
tools,
stringr,
mzR,
matrixStats,
plotrix,
slam,
plotly
Imports:
egg,
graphics,
grDevices,
methods,
stats,
utils
Remotes: decisionpatterns/searchable
Suggests:
knitr,
BiocStyle,
testthat
VignetteBuilder: knitr
Maintainer: Hendrik Treutler<[email protected]>
Description: We present a novel approach for the untargeted discovery
of metabolite families offering a bird's eye view of metabolic regulation
in comparative metabolomics. We implemented the presented methodology
in the easy-to-use web application MetFamily to enable the analysis
of comprehensive metabolomics studies for all researchers worldwide.
License: GPL (>= 2) + file LICENSE
biocViews: Software, Visualization
Collate:
'Annotation.R'
'Classifiers.R'
'runMetFamily.R'
'FragmentMatrixFunctions.R'
'DataProcessing.R'
'Analysis.R'
'TreeAlgorithms.R'
'Plots.R'
'R_packages.R'
RoxygenNote: 7.2.3
Encoding: UTF-8