An R package to run you R code in different R implementations and platforms in Docker containers.
You can install the development version from GitHub with:
# install.packages("remotes")
remotes::install_github("ismailsunni/altRnative")library('altRnative')
pull_docker_image(c('gnu-r', 'mro'), c('debian', 'ubuntu', 'fedora'))
#> Warning in pull_docker_image(c("gnu-r", "mro"), c("debian", "ubuntu",
#> "fedora")): Docker image for debian and gnu-r is not supported
#> Warning in pull_docker_image(c("gnu-r", "mro"), c("debian", "ubuntu",
#> "fedora")): Docker image for debian and mro is not supported
#> Warning in pull_docker_image(c("gnu-r", "mro"), c("debian", "ubuntu",
#> "fedora")): Docker image for ubuntu and gnu-r is not supported
#> Warning in pull_docker_image(c("gnu-r", "mro"), c("debian", "ubuntu",
#> "fedora")): Docker image for ubuntu and mro is not supported
#> Warning in pull_docker_image(c("gnu-r", "mro"), c("debian", "ubuntu",
#> "fedora")): Docker image for fedora and gnu-r is not supported
#> Warning in pull_docker_image(c("gnu-r", "mro"), c("debian", "ubuntu",
#> "fedora")): Docker image for fedora and mro is not supported
benchmark_result = benchmarks_code(
code = "1 + 1",
r_implementations = c('gnu-r', 'mro'),
platforms = c('debian', 'ubuntu', 'fedora', 'archlinux'),
times = 3
)
#> Warning in benchmarks("run_code", code_or_file = code, platforms =
#> platforms, : Docker image for gnu-r and ubuntu not found, not running
#> benchmark
#> Warning in benchmarks("run_code", code_or_file = code, platforms =
#> platforms, : Docker image for mro and debian not found, not running
#> benchmark
#> Warning in benchmarks("run_code", code_or_file = code, platforms =
#> platforms, : Docker image for mro and archlinux not found, not running
#> benchmark
#> Detected API version '1.40' is above max version '1.39'; downgrading
#> Detected API version '1.40' is above max version '1.39'; downgrading
#> Detected API version '1.40' is above max version '1.39'; downgrading
#> Detected API version '1.40' is above max version '1.39'; downgrading
#> Detected API version '1.40' is above max version '1.39'; downgrading
#> Detected API version '1.40' is above max version '1.39'; downgrading
#> Detected API version '1.40' is above max version '1.39'; downgrading
#> Detected API version '1.40' is above max version '1.39'; downgrading
#> Detected API version '1.40' is above max version '1.39'; downgrading
#> Detected API version '1.40' is above max version '1.39'; downgrading
#> Detected API version '1.40' is above max version '1.39'; downgrading
#> Detected API version '1.40' is above max version '1.39'; downgrading
#> Detected API version '1.40' is above max version '1.39'; downgrading
#> Detected API version '1.40' is above max version '1.39'; downgrading
#> Detected API version '1.40' is above max version '1.39'; downgrading
library('ggplot2')
autoplot(benchmark_result)
#> Coordinate system already present. Adding new coordinate system, which will replace the existing one.
Documentation is created with roxygen2 and the website with pkgdown. Render both with the following commands:
roxygen2::roxygenise(roclets = c('rd', 'collate', 'namespace', 'vignette'))
pkgdown::build_site()The file README.md is generated from README.Rmd. A pre-commit hook added with usethis should be configured to make sure the Markdown file is always up to date with the R Markdown file. Add the following to a file .git/hooks/pre-commit:
#!/bin/bash
README=($(git diff --cached --name-only | grep -Ei '^README\.[R]?md$'))
MSG="use 'git commit --no-verify' to override this check"
if [[ ${#README[@]} == 0 ]]; then
exit 0
fi
if [[ README.Rmd -nt README.md ]]; then
echo -e "README.md is out of date; please re-knit README.Rmd\n$MSG"
exit 1
elif [[ ${#README[@]} -lt 2 ]]; then
echo -e "README.Rmd and README.md should be both staged\n$MSG"
exit 1
fiPlease note that the 'altRnative' project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.
This project is published under MIT license, see file LICENSE.