jbrowse_conf.json

// top-level JBrowse configuration file.  Treated the same as
// jbrowse.conf, but this one is in JSON format.
//
// Unless generating configuration from scripts, most users will
// prefer to add variables to jbrowse.conf instead of this file, since
// jbrowse.conf is much easier to hand-edit.
{
        "suppressUsageStatistics" : true,
	    "datasets" : {
		        "medicago" :  {
                    "url" : "?data=medicago",
                    "name" : "Medicago truncatula v4.0"
                }
        },
        "defaultLocation" : "chr1:39416540..39420427",
        "defaultTracks" : "DNA,Root%20(4%20week)%20RNA-seq%20Coverage,gene_models,gmap_TCs,Affymetrix_ProbeSets",
        "forceTracks" : "DNA,Root%20(4%20week)%20RNA-seq%20Coverage,gene_models,gmap_TCs,Affymetrix_ProbeSets",
        "projectHome" : {
            "logo" : "<img src='/medicago/include/images/mtr_leaf.png' alt='Medicago truncatula' height='20px' />",
            "href" : "http://www.medicagogenome.org",
            "title" : "Medicago truncatula Genome Database (MTGD)"
        },
        "classicMenu" : true
}