- Fix usage sections in documentation.
- Fix missing braces in documentation.
- Fix aliasing for package manual entry (#15).
- The package has been overhauled to support modern spatial data structures.
Specifically, sf package objects (
sf::st_sf()
) are now use for vector data and terra package objects (terra::rast()
) for raster data. These updates impact many of the user-facing functions (e.g.,calcBoundaryData()
,sim.species()
,sim.space()
,calcSpeciesAverageInPus()
,rap()
), so users will likely need to update their code. - The
cs_pus
,cs_spp
, andcs_spaces
built-in datasets have been removed. This is becauseterra::rast()
objects cannot be distributed as built-in datasets for packages. These datasets can now be manually imported from external files distributed with the package (see?cs_pus
for more details). - Remove rgdal and rgeos packages as dependencies (#13).
- Support for the raster package has been deprecated.
- The
SpatialPolygons2PolySet
function has been renamed toconvert2PolySet
. - Update citation format.
- Update package startup message.
- Update C++ specification to C++14.
- Update examples and unit tests.
- Add
NumericFocus
parameter toGurobiOpts
to handle numerical issues. - Update
spacePlot
to avoid throwing a ggplot2 deprecation warning.
- CRAN release.
- Update Gurobi documentation URLs.
- The data simulation function has been updated such that the RandomFields package is no longer a dependency.
- The
sim.space
andsim.species
functions no longer accept RandomFileds objects as arguments. To simulate spatially auto-correlated data using random fields, anumeric
value should be supplied to themodel
parameter. - Small tweaks to case study in vignette.
- The RandomFields and RgoogleMaps R packages are now optional dependencies.
- Minimum supported versions are now specified for most dependencies.
- The
verbose
parameter ofsolve()
can now be used to suppress output from the Gurobi solver. - Fix compatibility issues with updates to the ggplot2 package.
- Fix note during package checks related to the rgdal package.
- Update example datasets and
make.RapData
function to improve compatibility with updates to coordinate reference system (sp::CRS
) objects. These updates simply mean that warning messages will no longer be displayed. The compatibility issues that resulted in warnings did not affect the correctness of any results.
- Fix compatibility issues between the testthat R package and the gurobi R package in package tests.
- Implement GitHub Actions continuous integration (i.e. update tests and README).
- Remove support for processing data using GDAL.
- Remove
is.gdalInstalled
andrasterizeGDAL
functions. - Update Spatial-class objects with updated
sp::CRS()
class definition
- Fix "Non-file package-anchored link(s) in documentation object" warnings in R-devel checks.
- Fix errors in R-devel CRAN checks due changes in
is.finite
behaviour forcharacter
class objects. - Fix WorldClim URLs.
- Fix warnings in R-devel CRAN checks related to documentation.
- Fix broken link in vignette.
- Retain debugging symbols to conform with CRAN policies.
- Fix bug that caused the R session to crash when none of the planning units associated with an attribute space were selected in a manually specified solution. Now the space-held calculations will return a negative infinity value in such cases.
- Permit attribute spaces to have a single demand point.
- Fix compatibility issues with demand point examples and hypervolume R package (version 2.0.10).
- Update package citation.
- Removed rgurobi R package dependency because the gurobi R package (version 8.0.0+) provides the functionality to access solutions from the solution pool.
- Multiple solutions can now be generated using the three different search pool methods provided Gurobi.
- Permit a zero MIPGAP in argument to
GurobiOpts
. - The
print.RapResults
function now prints information in a prettier manner. - The
raptr::solve
function now throws a warning if some species are poorly represented in the solution.
- Vignette size has been reduced.
- Updated DOI in README.
- Unit tests now compatible with testthat R package (version 1.0.2.9000).
- The assertthat R package is now used for validating function arguments.
- Vignette now uses
knitr::rmarkdown_notangle
engine to avoid running the code during package checks, and placeholder vignette file has been removed. - Code has been linted.
- Functions from other packages are now called explicitly using
pkg::function
. - Messages are now displayed using
message
following best practices. - Updated readme.
- Added citation for Methods in Ecology and Evolution paper.
- Strip debugging symbols from compiled files to reduce installation size.
- The
is.GurobiInstalled
now does not run gurobi to avoid spurious notes during CRAN checks on academic license.
- Fix documentation in
make.DemandPoints
. - Use
\donttest
instead of\dontrun
for examples. - Fix broken example code.
- Find out which suggested packages are installed using
requireNamespace
. - Add more links to package documentation.
- Register Rcpp functions.
- Reduce memory consumption using external pointers.
- Fix memory leaks.
- Fix bug in tests for
calcSpeciesAverageInPus
.
- Reduce installation size.
- Fix typo in README.
- Fixed authorship typo.
- Updated README with instructions for installing from CRAN.
- Initial package version.