cellpy/.github/workflows/ci.yml at master · jepegit/cellpy · GitHub

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# Merge gate (Tier 1): PRs and pushes to master only.
# ``essential`` is the fast signal; ``full`` runs the whole linux suite.
# Both job display names are required status checks on master.
#
# Pure docs/md/issueflows PRs are path-ignored here; ci-dummy.yml reports the
# same check names as no-ops so branch protection does not block those PRs.
# Full conda / pip matrix runs in ci-scheduled.yml (Tier 3) — no dummy needed.
name: CI
on:
  pull_request:
    branches: [master]
    paths-ignore:
      - "docs/**"
      - "paper/**"
      - ".issueflows/01-current-issues/**"
      - ".issueflows/02-partly-solved-issues/**"
      - ".issueflows/03-solved-issues/**"
      - ".issueflows/04-designs-and-guides/**"
      - ".issueflows/05-epics/**"
      - "graphify-out/**"
      - "**/*.md"
  push:
    branches: [master]
    paths-ignore:
      - "docs/**"
      - "paper/**"
      - ".issueflows/01-current-issues/**"
      - ".issueflows/02-partly-solved-issues/**"
      - ".issueflows/03-solved-issues/**"
      - ".issueflows/04-designs-and-guides/**"
      - ".issueflows/05-epics/**"
      - "graphify-out/**"
      - "**/*.md"
  workflow_dispatch:
concurrency:
  group: ci-${{ github.ref }}
  cancel-in-progress: true
jobs:
  essential:
    name: essential (linux / uv)
    runs-on: ubuntu-latest
    env:
      UV_NO_SOURCES: 1
    steps:
      - uses: actions/checkout@v6
      - uses: astral-sh/setup-uv@v5
        with:
          version: "latest"
      - name: Install system dependencies
        run: sudo apt-get update && sudo apt-get install -y mdbtools
      - run: uv python install 3.13
      - name: Sync dependencies (PyPI cellpycore only)
        run: uv sync
      - name: Run essential tests
        # No plotutils ignore: the summary-plot suite was excluded because it
        # "needs a display", but it selects the Agg backend itself and runs
        # headless fine. The exclusion was hiding real breakage (#567).
        env:
          MPLBACKEND: Agg
        run: uv run pytest -m essential
      - name: Run cellpy setup
        run: uv run cellpy setup --silent
      - name: Run cellpy check
        run: uv run cellpy info --check

  full:
    name: full (linux / uv)
    runs-on: ubuntu-latest
    timeout-minutes: 25
    env:
      UV_NO_SOURCES: 1
    steps:
      - uses: actions/checkout@v6
      - uses: astral-sh/setup-uv@v5
        with:
          version: "latest"
      - name: Install system dependencies
        run: sudo apt-get update && sudo apt-get install -y mdbtools
      - run: uv python install 3.13
      - name: Sync dependencies (PyPI cellpycore only, with plotting extras)
        # --extra batch pulls in plotly/seaborn so the collector/plotter code
        # paths actually execute under test (they were never exercised in CI
        # before — the flip's curve-consumer migration needs this net).
        run: uv sync --extra batch
      - name: Run the full test suite
        # The gate that catches non-essential regressions (issue #530). The
        # plotutils exclusion is gone (#567): with --extra batch this job has
        # plotly and seaborn, so it is the only place the figure menu actually
        # renders. Agg keeps matplotlib headless.
        env:
          MPLBACKEND: Agg
        run: uv run pytest