pyproject.toml

[build-system]
requires = ["hatchling>=1.27", "uv-dynamic-versioning>=0.7.0"]
build-backend = "hatchling.build"

[project]
name = "cellpy"
dynamic = ["version"]
description = "Extract and manipulate data from battery data testers."
readme = "README.md"
requires-python = ">=3.13"
license = "MIT"
license-files = ["LICEN[CS]E*"]
authors = [
    { name = "Jan Petter Maehlen", email = "jepe@ife.no" },
    { name = "Asbjoern Ulvestad", email = "Asbjorn.Ulvestad@ife.no" },
    { name = "Muhammad Abdelhamid", email = "Muhammad.Abdelhamid@faam.com" },
    { name = "Meghana Sudarshan", email = "meghana.sudarshan@ife.no" },
    { name = "Julia Wind", email = "julia.wind@ife.no" },
]
keywords = ["cellpy", "battery"]
classifiers = [
    "Development Status :: 5 - Production/Stable",
    "Intended Audience :: Science/Research",
    "Natural Language :: English",
    "Programming Language :: Python :: 3.13",
]

dependencies = [
    "scipy",
    "numpy",
    "pandas>=3.0.3,<4",
    "setuptools",
    "matplotlib",
    "openpyxl",
    "PyGithub",
    "tqdm",
    "pint",
    "requests",
    "pyodbc",
    "sqlalchemy>=2.0.0",
    "sqlalchemy-access; platform_system == 'Windows'",
    "dateparser",
    "cookiecutter",
    "pyyaml",
    "jinja2_time",
    "ipykernel",
    "rich",
    "charset-normalizer",
    "polars",
    "pyarrow>=16",
    "typer",
    "xmltodict",
    "defusedxml",
    "isal",
    # cellpy-core is released on PyPI (issue cellpy/cellpy-core#44). Pin an
    # exact version (==) before tagging a cellpy release so the release maps to
    # a known core revision. For dual-repo development, install the sibling
    # checkout editable after sync (see CONTRIBUTING.md); do not commit a
    # [tool.uv.sources] path override — it breaks Dependabot lock updates.
    "cellpycore==0.2.3",
    "pydantic-settings>=2.14.2",
    "platformdirs>=4.10.0",
    "universal-pathlib>=0.3.10",
    "paramiko>=5.0.0",
]

[project.optional-dependencies]
batch = ["ipython", "jupyter", "plotly", "seaborn", "kaleido>=0.1,<1.4"]
fit = ["lmfit"]
legacy-files = ["tables"]
all = ["ipython", "jupyter", "plotly", "seaborn", "kaleido>=0.1,<1.4", "lmfit", "tables"]

[project.scripts]
cellpy = "cellpy.cli:cli"

[project.urls]
Homepage = "https://github.com/jepegit/cellpy"
Repository = "https://github.com/jepegit/cellpy"
Documentation = "https://cellpy.readthedocs.io"

[dependency-groups]
dev = [
    # tables is a `legacy-files` extra for users, but the test suite reads
    # and writes v8 HDF5 fixtures throughout, so dev envs always carry it.
    "tables",
    "black",
    "build",
    "coverage",
    "flake8",
    "ipykernel",
    "nox",
    "lmfit",
    "pytest",
    "pytest-benchmark",
    "pytest-timeout",
]
docs = [
    "ipykernel>=7.3.0",
    "matplotlib>=3.10.6",
    "mkdocstrings-python>=2.0.5",
    "nbconvert>=7.17.1",
    "zensical>=0.0.46",
]

[tool.hatch.version]
source = "uv-dynamic-versioning"

[tool.uv-dynamic-versioning]
vcs = "git"
style = "pep440"
# Tolerate the existing inconsistent tags (e.g. "v.0.3.0", "v0.4.2", "1.0.3a13").
# Going forward, use "vX.Y.Z" tags.
pattern = "default-unprefixed"
fallback-version = "0.0.0"

[tool.hatch.build.targets.wheel]
packages = ["cellpy"]

[tool.hatch.build.targets.sdist]
exclude = [
    "/.github",
    "/docs",
    "/examples",
    "/templates",
    "/tests",
    "/dev_data",
    "/dev_utils",
    "/testdata",
    "/recipe",
    "/.pytest_cache",
]

[tool.pytest.ini_options]
minversion = "6.0"
addopts = "--durations=0 --capture=fd -v -m \"not slowtest and not smoketest and not unimportant and not unfinished and not onlylocal\""
markers = [
    "slowtest: marks tests as slow (deselect with '-m \"not slow\"')",
    "serial",
    "skip_on_macos: skip this test when running on macOS (e.g. CI flakiness)",
    "essential: marks the core smoke tests of the read -> step-table -> summary pipeline and the cellpy/cellpy-core parity contract (run with '-m essential')",
    "benchmark: opt-in performance benchmarks (run benchmarks/ or pytest -m benchmark)",
    "onlylocal: needs local resources (Docker SFTP, live SSH, etc.); deselected by default addopts",
]
filterwarnings = [
    "ignore::DeprecationWarning:dateparser",
    "ignore::UserWarning:click",  # click ships inside typer
    "ignore::FutureWarning:numpy",
    "ignore::UserWarning:uncertainties",
]

[tool.black]
line-length = 120

[tool.coverage.run]
source = ["cellpy"]
branch = true
omit = [
    "cellpy/libs/*",
    "cellpy/parameters/legacy/*",
    "cellpy/_version.py",
    "*/tests/*",
]

[tool.coverage.report]
show_missing = true
skip_covered = false
exclude_also = [
    "def __repr__",
    "if __name__ == .__main__.:",
    "raise NotImplementedError",
    "if TYPE_CHECKING:",
    "@(abc\\.)?abstractmethod",
]