diff --git a/dev/LICENSE-text.html b/dev/LICENSE-text.html
index 9feef37..5cfd4cd 100644
--- a/dev/LICENSE-text.html
+++ b/dev/LICENSE-text.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="index.html">jmf</a>
 
-    <small class="nav-text text-danger me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="In-development version">0.2.1.9003</small>
+    <small class="nav-text text-danger me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="In-development version">0.3.0.9000</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/dev/LICENSE.html b/dev/LICENSE.html
index 5cdb2ae..b3daa6b 100644
--- a/dev/LICENSE.html
+++ b/dev/LICENSE.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="index.html">jmf</a>
 
-    <small class="nav-text text-danger me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="In-development version">0.2.1.9003</small>
+    <small class="nav-text text-danger me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="In-development version">0.3.0.9000</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/dev/authors.html b/dev/authors.html
index 77b2eaf..9b58a87 100644
--- a/dev/authors.html
+++ b/dev/authors.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="index.html">jmf</a>
 
-    <small class="nav-text text-danger me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="In-development version">0.2.1.9003</small>
+    <small class="nav-text text-danger me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="In-development version">0.3.0.9000</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -55,14 +55,14 @@ <h2 id="citation">Citation</h2>
 
       <p>Hausmann B (2024).
 <em>jmf: JMF Utility Functions</em>.
-R package version 0.2.1.9003,
+R package version 0.3.0.9000,
 https://github.com/jmf-vienna/jmf-r, https://jmf.univie.ac.at/, <a href="https://jmf-vienna.github.io/jmf-r/">https://jmf-vienna.github.io/jmf-r/</a>.
 </p>
       <pre>@Manual{,
   title = {jmf: JMF Utility Functions},
   author = {Bela Hausmann},
   year = {2024},
-  note = {R package version 0.2.1.9003,
+  note = {R package version 0.3.0.9000,
     https://github.com/jmf-vienna/jmf-r, https://jmf.univie.ac.at/},
   url = {https://jmf-vienna.github.io/jmf-r/},
 }</pre>
diff --git a/dev/index.html b/dev/index.html
index 53ebefc..147a05c 100644
--- a/dev/index.html
+++ b/dev/index.html
@@ -30,7 +30,7 @@
 
     <a class="navbar-brand me-2" href="index.html">jmf</a>
 
-    <small class="nav-text text-danger me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="In-development version">0.2.1.9003</small>
+    <small class="nav-text text-danger me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="In-development version">0.3.0.9000</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/dev/news/index.html b/dev/news/index.html
index dfba7d6..681237a 100644
--- a/dev/news/index.html
+++ b/dev/news/index.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">jmf</a>
 
-    <small class="nav-text text-danger me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="In-development version">0.2.1.9003</small>
+    <small class="nav-text text-danger me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="In-development version">0.3.0.9000</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -41,14 +41,18 @@
 <h2 class="pkg-version" data-toc-text="development version" id="jmf-development-version">jmf (development version)<a class="anchor" aria-label="anchor" href="#jmf-development-version"></a></h2>
 </div>
     <div class="section level2">
+<h2 class="pkg-version" data-toc-text="0.3.0" id="jmf-030">jmf 0.3.0<a class="anchor" aria-label="anchor" href="#jmf-030"></a></h2>
+<ul><li>Added <code><a href="../reference/validate-jmf-ids.html">is_jmf_project_id()</a></code> and <code><a href="../reference/validate-jmf-ids.html">jmf_project_id_regex()</a></code>.</li>
+</ul></div>
+    <div class="section level2">
 <h2 class="pkg-version" data-toc-text="0.2.1" id="jmf-021">jmf 0.2.1<a class="anchor" aria-label="anchor" href="#jmf-021"></a></h2>
 <ul><li>
-<code><a href="../reference/uniques.html">uniques()</a></code> now keeps <code>NA</code>s and always uses <code>LC_COLLATE=C</code>.</li>
+<code><a href="../reference/uniques.html">uniques()</a></code> keeps <code>NA</code>s and sorts using <code>LC_COLLATE=C</code>.</li>
 </ul></div>
     <div class="section level2">
 <h2 class="pkg-version" data-toc-text="0.2.0" id="jmf-020">jmf 0.2.0<a class="anchor" aria-label="anchor" href="#jmf-020"></a></h2>
-<ul><li>Added <code><a href="../reference/quiet.html">quiet()</a></code>.</li>
-<li>Added <code><a href="../reference/uniques.html">uniques()</a></code>.</li>
+<ul><li>Added <code><a href="../reference/uniques.html">uniques()</a></code>.</li>
+<li>Added <code><a href="../reference/quiet.html">quiet()</a></code>.</li>
 </ul></div>
     <div class="section level2">
 <h2 class="pkg-version" data-toc-text="0.1.0" id="jmf-010">jmf 0.1.0<a class="anchor" aria-label="anchor" href="#jmf-010"></a></h2>
diff --git a/dev/pkgdown.yml b/dev/pkgdown.yml
index 893e975..e583b14 100644
--- a/dev/pkgdown.yml
+++ b/dev/pkgdown.yml
@@ -2,7 +2,7 @@ pandoc: 3.1.11
 pkgdown: 2.1.0
 pkgdown_sha: ~
 articles: {}
-last_built: 2024-08-06T09:53Z
+last_built: 2024-08-06T11:05Z
 urls:
   reference: https://jmf-vienna.github.io/jmf-r/reference
   article: https://jmf-vienna.github.io/jmf-r/articles
diff --git a/dev/reference/index.html b/dev/reference/index.html
index 49b78e2..aa88912 100644
--- a/dev/reference/index.html
+++ b/dev/reference/index.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">jmf</a>
 
-    <small class="nav-text text-danger me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="In-development version">0.2.1.9003</small>
+    <small class="nav-text text-danger me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="In-development version">0.3.0.9000</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/dev/reference/jmf-package.html b/dev/reference/jmf-package.html
index 34d5040..9b4f839 100644
--- a/dev/reference/jmf-package.html
+++ b/dev/reference/jmf-package.html
@@ -11,7 +11,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">jmf</a>
 
-    <small class="nav-text text-danger me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="In-development version">0.2.1.9003</small>
+    <small class="nav-text text-danger me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="In-development version">0.3.0.9000</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/dev/reference/na.html b/dev/reference/na.html
index 845d4be..cfaa7a8 100644
--- a/dev/reference/na.html
+++ b/dev/reference/na.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">jmf</a>
 
-    <small class="nav-text text-danger me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="In-development version">0.2.1.9003</small>
+    <small class="nav-text text-danger me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="In-development version">0.3.0.9000</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/dev/reference/quiet.html b/dev/reference/quiet.html
index c4eb7c2..a20f67e 100644
--- a/dev/reference/quiet.html
+++ b/dev/reference/quiet.html
@@ -15,7 +15,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">jmf</a>
 
-    <small class="nav-text text-danger me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="In-development version">0.2.1.9003</small>
+    <small class="nav-text text-danger me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="In-development version">0.3.0.9000</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/dev/reference/uniques.html b/dev/reference/uniques.html
index b2137d5..7952959 100644
--- a/dev/reference/uniques.html
+++ b/dev/reference/uniques.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">jmf</a>
 
-    <small class="nav-text text-danger me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="In-development version">0.2.1.9003</small>
+    <small class="nav-text text-danger me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="In-development version">0.3.0.9000</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/dev/reference/validate-jmf-ids.html b/dev/reference/validate-jmf-ids.html
index 58e118b..f5182cc 100644
--- a/dev/reference/validate-jmf-ids.html
+++ b/dev/reference/validate-jmf-ids.html
@@ -17,7 +17,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">jmf</a>
 
-    <small class="nav-text text-danger me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="In-development version">0.2.1.9003</small>
+    <small class="nav-text text-danger me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="In-development version">0.3.0.9000</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/dev/search.json b/dev/search.json
index 2e628e0..81bc326 100644
--- a/dev/search.json
+++ b/dev/search.json
@@ -1 +1 @@
-[{"path":"https://jmf-vienna.github.io/jmf-r/dev/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"MIT License","title":"MIT License","text":"Copyright (c) 2024 jmf authors Permission hereby granted, free charge, person obtaining copy software associated documentation files (“Software”), deal Software without restriction, including without limitation rights use, copy, modify, merge, publish, distribute, sublicense, /sell copies Software, permit persons Software furnished , subject following conditions: copyright notice permission notice shall included copies substantial portions Software. SOFTWARE PROVIDED “”, WITHOUT WARRANTY KIND, EXPRESS IMPLIED, INCLUDING LIMITED WARRANTIES MERCHANTABILITY, FITNESS PARTICULAR PURPOSE NONINFRINGEMENT. EVENT SHALL AUTHORS COPYRIGHT HOLDERS LIABLE CLAIM, DAMAGES LIABILITY, WHETHER ACTION CONTRACT, TORT OTHERWISE, ARISING , CONNECTION SOFTWARE USE DEALINGS SOFTWARE.","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Bela Hausmann. Author. Joint Microbiome Facility (JMF) Medical University Vienna University Vienna. Maintainer, funder.","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Hausmann B (2024). jmf: JMF Utility Functions. R package version 0.2.1.9003, https://github.com/jmf-vienna/jmf-r, https://jmf.univie.ac./, https://jmf-vienna.github.io/jmf-r/.","code":"@Manual{,   title = {jmf: JMF Utility Functions},   author = {Bela Hausmann},   year = {2024},   note = {R package version 0.2.1.9003,     https://github.com/jmf-vienna/jmf-r, https://jmf.univie.ac.at/},   url = {https://jmf-vienna.github.io/jmf-r/}, }"},{"path":[]},{"path":"https://jmf-vienna.github.io/jmf-r/dev/index.html","id":"installation","dir":"","previous_headings":"","what":"Installation","title":"JMF Utility Functions","text":"Install latest release GitHub using pak: install development version:","code":"pak::pak(\"jmf-vienna/jmf-r@*release\") pak::pak(\"jmf-vienna/jmf-r\")"},{"path":[]},{"path":"https://jmf-vienna.github.io/jmf-r/dev/index.html","id":"reduce-verbosity","dir":"","previous_headings":"Usage","what":"Reduce verbosity","title":"JMF Utility Functions","text":"","code":"library(jmf) quiet() library(tidyverse)"},{"path":"https://jmf-vienna.github.io/jmf-r/dev/index.html","id":"utils","dir":"","previous_headings":"Usage","what":"Utils","title":"JMF Utility Functions","text":"Stable combined unique() sort():","code":"x <- c(   \"a\", \"vector\", \"of\", \"strings\",   \"and\", \"some\", \"letters\", \":\", NA,   \"a\", \"b\", \"c\", \"and\", \"A\", \"B\", \"C\" )  x |> uniques() #>  [1] \":\"       \"A\"       \"B\"       \"C\"       \"a\"       \"and\"     \"b\"       #>  [8] \"c\"       \"letters\" \"of\"      \"some\"    \"strings\" \"vector\"  NA"},{"path":"https://jmf-vienna.github.io/jmf-r/dev/index.html","id":"shortcuts","dir":"","previous_headings":"Usage","what":"Shortcuts","title":"JMF Utility Functions","text":"available (.e., NA): () available (.e., NA): na()","code":"starwars |>   select(name, birth_year, hair_color) |>   filter(a(birth_year), na(hair_color)) #> # A tibble: 4 × 3 #>   name                  birth_year hair_color #>   <chr>                      <dbl> <chr>      #> 1 C-3PO                        112 <NA>       #> 2 R2-D2                         33 <NA>       #> 3 Greedo                        44 <NA>       #> 4 Jabba Desilijic Tiure        600 <NA>"},{"path":"https://jmf-vienna.github.io/jmf-r/dev/index.html","id":"validation-of-jmf-ids","dir":"","previous_headings":"Usage","what":"Validation of JMF IDs","title":"JMF Utility Functions","text":"","code":"# valid JMF project ID: is_jmf_project_id(\"JMF-2401-42\") #> [1] TRUE  # this is a JMF sample ID: is_jmf_project_id(\"JMF-2401-42-0001\") #> [1] FALSE jmf_project_id_regex(internal = \"allow\") #> JMF-(?:(?:19(?:01|02|03|04|05|06|07|08|09|10|11|12|DM)-[1-9A-Z])|(?:20(?:01|02|03|04|05|06|07|08|09|10|11|12)-[1-9A-Z])|(?:(?:(?:2[1-9])|(?:[3-9][0-9]))(?:01|02|03|04|05|06|07|08|09|10|11|12)-(?:(?:0[1-9])|(?:[1-9][0-9])))|(?:(?:19NC|19PC|CTRL)-[1-9A-Z]))"},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/jmf-package.html","id":null,"dir":"Reference","previous_headings":"","what":"jmf: JMF Utility Functions — jmf-package","title":"jmf: JMF Utility Functions — jmf-package","text":"assortment utilities, helpers, common functions used Joint Microbiome Facility (JMF).","code":""},{"path":[]},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/jmf-package.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"jmf: JMF Utility Functions — jmf-package","text":"Maintainer: Joint Microbiome Facility (JMF) Medical University Vienna University Vienna info.jmf@univie.ac.[funder] Authors: Bela Hausmann (ORCID)","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/na.html","id":null,"dir":"Reference","previous_headings":"","what":"Shortcuts for is.na() — a","title":"Shortcuts for is.na() — a","text":"(x) !.na(x) na() alias .na().","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/na.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Shortcuts for is.na() — a","text":"","code":"a(x)  na(x)"},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/na.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Shortcuts for is.na() — a","text":"x vector tested.","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/na.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Shortcuts for is.na() — a","text":"logical vector.","code":""},{"path":[]},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/na.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Shortcuts for is.na() — a","text":"","code":"a(c(1, NA, 3)) #> [1]  TRUE FALSE  TRUE na(c(1, NA, 3)) #> [1] FALSE  TRUE FALSE"},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/quiet.html","id":null,"dir":"Reference","previous_headings":"","what":"Decreases tidyverse verbosity — quiet","title":"Decreases tidyverse verbosity — quiet","text":"Disables: tidyverse startup messages readr column specification messages","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/quiet.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Decreases tidyverse verbosity — quiet","text":"","code":"quiet()"},{"path":[]},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/quiet.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Decreases tidyverse verbosity — quiet","text":"","code":"quiet() library(tidyverse) # so quiet :) x <- read_csv(readr_example(\"mtcars.csv\")) # so quiet :)"},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/uniques.html","id":null,"dir":"Reference","previous_headings":"","what":"Unique and sorted vectors — uniques","title":"Unique and sorted vectors — uniques","text":"Like unique(), also sorted.","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/uniques.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Unique and sorted vectors — uniques","text":"","code":"uniques(x)"},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/uniques.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Unique and sorted vectors — uniques","text":"x vector.","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/uniques.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Unique and sorted vectors — uniques","text":"sorted vector without duplicates.","code":""},{"path":[]},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/uniques.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Unique and sorted vectors — uniques","text":"","code":"base::unique(c(3, 1, 2, 3)) #> [1] 3 1 2 uniques(c(3, 1, 2, 3)) #> [1] 1 2 3"},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/validate-jmf-ids.html","id":null,"dir":"Reference","previous_headings":"","what":"Check for valid JMF IDs — is_jmf_project_id","title":"Check for valid JMF IDs — is_jmf_project_id","text":"is_jmf_project_id(): checks valid JMF project IDs. jmf_project_id_regex(): returns underlying regular expression.","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/validate-jmf-ids.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Check for valid JMF IDs — is_jmf_project_id","text":"","code":"is_jmf_project_id(string, internal = \"deny\")  jmf_project_id_regex(internal = \"deny\")"},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/validate-jmf-ids.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Check for valid JMF IDs — is_jmf_project_id","text":"string Input vector passed str_detect(). internal \"allow\" \"deny\" internal IDs.","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/validate-jmf-ids.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Check for valid JMF IDs — is_jmf_project_id","text":"is_jmf_project_id(): logical vector length string. jmf_project_id_regex(): rex() regular expression.","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/validate-jmf-ids.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Check for valid JMF IDs — is_jmf_project_id","text":"","code":"# valid JMF project ID: is_jmf_project_id(\"JMF-2401-42\") #> [1] TRUE  # this is a JMF sample ID: is_jmf_project_id(\"JMF-2401-42-0001\") #> [1] FALSE  # extract JMF project ID from text: stringr::str_extract(   \"my sample id is JMF-2401-42-0001\",   jmf_project_id_regex() ) #> [1] \"JMF-2401-42\""},{"path":[]},{"path":"https://jmf-vienna.github.io/jmf-r/dev/news/index.html","id":"jmf-021","dir":"Changelog","previous_headings":"","what":"jmf 0.2.1","title":"jmf 0.2.1","text":"uniques() now keeps NAs always uses LC_COLLATE=C.","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/news/index.html","id":"jmf-020","dir":"Changelog","previous_headings":"","what":"jmf 0.2.0","title":"jmf 0.2.0","text":"Added quiet(). Added uniques().","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/news/index.html","id":"jmf-010","dir":"Changelog","previous_headings":"","what":"jmf 0.1.0","title":"jmf 0.1.0","text":"Added () na().","code":""}]
+[{"path":"https://jmf-vienna.github.io/jmf-r/dev/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"MIT License","title":"MIT License","text":"Copyright (c) 2024 jmf authors Permission hereby granted, free charge, person obtaining copy software associated documentation files (“Software”), deal Software without restriction, including without limitation rights use, copy, modify, merge, publish, distribute, sublicense, /sell copies Software, permit persons Software furnished , subject following conditions: copyright notice permission notice shall included copies substantial portions Software. SOFTWARE PROVIDED “”, WITHOUT WARRANTY KIND, EXPRESS IMPLIED, INCLUDING LIMITED WARRANTIES MERCHANTABILITY, FITNESS PARTICULAR PURPOSE NONINFRINGEMENT. EVENT SHALL AUTHORS COPYRIGHT HOLDERS LIABLE CLAIM, DAMAGES LIABILITY, WHETHER ACTION CONTRACT, TORT OTHERWISE, ARISING , CONNECTION SOFTWARE USE DEALINGS SOFTWARE.","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Bela Hausmann. Author. Joint Microbiome Facility (JMF) Medical University Vienna University Vienna. Maintainer, funder.","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Hausmann B (2024). jmf: JMF Utility Functions. R package version 0.3.0.9000, https://github.com/jmf-vienna/jmf-r, https://jmf.univie.ac./, https://jmf-vienna.github.io/jmf-r/.","code":"@Manual{,   title = {jmf: JMF Utility Functions},   author = {Bela Hausmann},   year = {2024},   note = {R package version 0.3.0.9000,     https://github.com/jmf-vienna/jmf-r, https://jmf.univie.ac.at/},   url = {https://jmf-vienna.github.io/jmf-r/}, }"},{"path":[]},{"path":"https://jmf-vienna.github.io/jmf-r/dev/index.html","id":"installation","dir":"","previous_headings":"","what":"Installation","title":"JMF Utility Functions","text":"Install latest release GitHub using pak: install development version:","code":"pak::pak(\"jmf-vienna/jmf-r@*release\") pak::pak(\"jmf-vienna/jmf-r\")"},{"path":[]},{"path":"https://jmf-vienna.github.io/jmf-r/dev/index.html","id":"reduce-verbosity","dir":"","previous_headings":"Usage","what":"Reduce verbosity","title":"JMF Utility Functions","text":"","code":"library(jmf) quiet() library(tidyverse)"},{"path":"https://jmf-vienna.github.io/jmf-r/dev/index.html","id":"utils","dir":"","previous_headings":"Usage","what":"Utils","title":"JMF Utility Functions","text":"Stable combined unique() sort():","code":"x <- c(   \"a\", \"vector\", \"of\", \"strings\",   \"and\", \"some\", \"letters\", \":\", NA,   \"a\", \"b\", \"c\", \"and\", \"A\", \"B\", \"C\" )  x |> uniques() #>  [1] \":\"       \"A\"       \"B\"       \"C\"       \"a\"       \"and\"     \"b\"       #>  [8] \"c\"       \"letters\" \"of\"      \"some\"    \"strings\" \"vector\"  NA"},{"path":"https://jmf-vienna.github.io/jmf-r/dev/index.html","id":"shortcuts","dir":"","previous_headings":"Usage","what":"Shortcuts","title":"JMF Utility Functions","text":"available (.e., NA): () available (.e., NA): na()","code":"starwars |>   select(name, birth_year, hair_color) |>   filter(a(birth_year), na(hair_color)) #> # A tibble: 4 × 3 #>   name                  birth_year hair_color #>   <chr>                      <dbl> <chr>      #> 1 C-3PO                        112 <NA>       #> 2 R2-D2                         33 <NA>       #> 3 Greedo                        44 <NA>       #> 4 Jabba Desilijic Tiure        600 <NA>"},{"path":"https://jmf-vienna.github.io/jmf-r/dev/index.html","id":"validation-of-jmf-ids","dir":"","previous_headings":"Usage","what":"Validation of JMF IDs","title":"JMF Utility Functions","text":"","code":"# valid JMF project ID: is_jmf_project_id(\"JMF-2401-42\") #> [1] TRUE  # this is a JMF sample ID: is_jmf_project_id(\"JMF-2401-42-0001\") #> [1] FALSE jmf_project_id_regex(internal = \"allow\") #> JMF-(?:(?:19(?:01|02|03|04|05|06|07|08|09|10|11|12|DM)-[1-9A-Z])|(?:20(?:01|02|03|04|05|06|07|08|09|10|11|12)-[1-9A-Z])|(?:(?:(?:2[1-9])|(?:[3-9][0-9]))(?:01|02|03|04|05|06|07|08|09|10|11|12)-(?:(?:0[1-9])|(?:[1-9][0-9])))|(?:(?:19NC|19PC|CTRL)-[1-9A-Z]))"},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/jmf-package.html","id":null,"dir":"Reference","previous_headings":"","what":"jmf: JMF Utility Functions — jmf-package","title":"jmf: JMF Utility Functions — jmf-package","text":"assortment utilities, helpers, common functions used Joint Microbiome Facility (JMF).","code":""},{"path":[]},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/jmf-package.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"jmf: JMF Utility Functions — jmf-package","text":"Maintainer: Joint Microbiome Facility (JMF) Medical University Vienna University Vienna info.jmf@univie.ac.[funder] Authors: Bela Hausmann (ORCID)","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/na.html","id":null,"dir":"Reference","previous_headings":"","what":"Shortcuts for is.na() — a","title":"Shortcuts for is.na() — a","text":"(x) !.na(x) na() alias .na().","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/na.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Shortcuts for is.na() — a","text":"","code":"a(x)  na(x)"},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/na.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Shortcuts for is.na() — a","text":"x vector tested.","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/na.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Shortcuts for is.na() — a","text":"logical vector.","code":""},{"path":[]},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/na.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Shortcuts for is.na() — a","text":"","code":"a(c(1, NA, 3)) #> [1]  TRUE FALSE  TRUE na(c(1, NA, 3)) #> [1] FALSE  TRUE FALSE"},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/quiet.html","id":null,"dir":"Reference","previous_headings":"","what":"Decreases tidyverse verbosity — quiet","title":"Decreases tidyverse verbosity — quiet","text":"Disables: tidyverse startup messages readr column specification messages","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/quiet.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Decreases tidyverse verbosity — quiet","text":"","code":"quiet()"},{"path":[]},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/quiet.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Decreases tidyverse verbosity — quiet","text":"","code":"quiet() library(tidyverse) # so quiet :) x <- read_csv(readr_example(\"mtcars.csv\")) # so quiet :)"},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/uniques.html","id":null,"dir":"Reference","previous_headings":"","what":"Unique and sorted vectors — uniques","title":"Unique and sorted vectors — uniques","text":"Like unique(), also sorted.","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/uniques.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Unique and sorted vectors — uniques","text":"","code":"uniques(x)"},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/uniques.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Unique and sorted vectors — uniques","text":"x vector.","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/uniques.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Unique and sorted vectors — uniques","text":"sorted vector without duplicates.","code":""},{"path":[]},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/uniques.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Unique and sorted vectors — uniques","text":"","code":"base::unique(c(3, 1, 2, 3)) #> [1] 3 1 2 uniques(c(3, 1, 2, 3)) #> [1] 1 2 3"},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/validate-jmf-ids.html","id":null,"dir":"Reference","previous_headings":"","what":"Check for valid JMF IDs — is_jmf_project_id","title":"Check for valid JMF IDs — is_jmf_project_id","text":"is_jmf_project_id(): checks valid JMF project IDs. jmf_project_id_regex(): returns underlying regular expression.","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/validate-jmf-ids.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Check for valid JMF IDs — is_jmf_project_id","text":"","code":"is_jmf_project_id(string, internal = \"deny\")  jmf_project_id_regex(internal = \"deny\")"},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/validate-jmf-ids.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Check for valid JMF IDs — is_jmf_project_id","text":"string Input vector passed str_detect(). internal \"allow\" \"deny\" internal IDs.","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/validate-jmf-ids.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Check for valid JMF IDs — is_jmf_project_id","text":"is_jmf_project_id(): logical vector length string. jmf_project_id_regex(): rex() regular expression.","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/reference/validate-jmf-ids.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Check for valid JMF IDs — is_jmf_project_id","text":"","code":"# valid JMF project ID: is_jmf_project_id(\"JMF-2401-42\") #> [1] TRUE  # this is a JMF sample ID: is_jmf_project_id(\"JMF-2401-42-0001\") #> [1] FALSE  # extract JMF project ID from text: stringr::str_extract(   \"my sample id is JMF-2401-42-0001\",   jmf_project_id_regex() ) #> [1] \"JMF-2401-42\""},{"path":[]},{"path":"https://jmf-vienna.github.io/jmf-r/dev/news/index.html","id":"jmf-030","dir":"Changelog","previous_headings":"","what":"jmf 0.3.0","title":"jmf 0.3.0","text":"Added is_jmf_project_id() jmf_project_id_regex().","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/news/index.html","id":"jmf-021","dir":"Changelog","previous_headings":"","what":"jmf 0.2.1","title":"jmf 0.2.1","text":"uniques() keeps NAs sorts using LC_COLLATE=C.","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/news/index.html","id":"jmf-020","dir":"Changelog","previous_headings":"","what":"jmf 0.2.0","title":"jmf 0.2.0","text":"Added uniques(). Added quiet().","code":""},{"path":"https://jmf-vienna.github.io/jmf-r/dev/news/index.html","id":"jmf-010","dir":"Changelog","previous_headings":"","what":"jmf 0.1.0","title":"jmf 0.1.0","text":"Added () na().","code":""}]