From 9f351add7d44d57bf35bd698459d150e768d6f11 Mon Sep 17 00:00:00 2001
From: jorainer <johannes.rainer@gmail.com>
Date: Fri, 17 May 2024 15:31:12 +0200
Subject: [PATCH] Install only release packages

---
 DESCRIPTION | 4 ++--
 Dockerfile  | 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index b983c52..b10424d 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -43,9 +43,9 @@ Suggests:
     RMariaDB,
     pheatmap,
     MsBackendMgf (>= 1.12.0),
-    MsBackendMassbank (>= 0.3.3),
+    MsBackendMassbank (>= 1.10.0),
     pander,
-    CompoundDb (>= 0.99.6),
+    CompoundDb (>= 1.7.0),
     xcms,
     msdata,
     MetaboAnnotation (>= 1.8.1),
diff --git a/Dockerfile b/Dockerfile
index 2806f5b..f929a60 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -30,7 +30,7 @@ RUN scripts/install-massbank.sh
 RUN scripts/mysql-init.sh
 
 ## Install the SpectraTutorials package and additional required packages
-RUN Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); BiocManager::install(ask = FALSE); BiocManager::install('RforMassSpectrometry/MsBackendMassbank'); BiocManager::install('RforMassSpectrometry/MsBackendSql')"
+RUN Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); BiocManager::install(ask = FALSE); BiocManager::install('MsBackendMassbank'); BiocManager::install('MsBackendSql')"
 
 RUN service mariadb start && \
     Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); devtools::install('.', dependencies = TRUE, build_vignettes = TRUE, repos = BiocManager::repositories())"