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Use Bioconductor RELEASE_3_19 docker image
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FROM bioconductor/bioconductor_docker:devel | ||
FROM bioconductor/bioconductor_docker:RELEASE_3_19 | ||
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LABEL name="jorainer/xcms_tutorials" \ | ||
url="https://github.com/jorainer/xcmsTutorials" \ | ||
maintainer="[email protected]" \ | ||
description="Docker container to run xcms tutorials." \ | ||
description="Docker container to run xcms tutorials. This version bases on the Bioconductor release 3.19 docker image." \ | ||
license="Artistic-2.0" | ||
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WORKDIR /home/rstudio | ||
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COPY --chown=rstudio:rstudio . /home/rstudio/ | ||
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## Install the xcmsTutorials package and additional required packages | ||
RUN Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); BiocManager::install(ask = FALSE, type = 'source'); BiocManager::install(c('RCurl', 'xcms'), ask = FALSE, dependencies = TRUE, type = 'source'); BiocManager::install('sneumann/xcms')" | ||
RUN Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); BiocManager::install(ask = FALSE, type = 'source'); BiocManager::install(c('RCurl', 'xcms'), ask = FALSE, dependencies = TRUE, type = 'source')" | ||
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RUN Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); devtools::install('.', dependencies = TRUE, type = 'source', build_vignettes = TRUE, repos = BiocManager::repositories())" |
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