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dramv_distill_custom_distillate
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#!/bin/bash
#SBATCH --nodes=1 # Number of requested nodes
#SBATCH --ntasks=5 # Cores per node requested
#SBATCH --time=7-50:00:00 # Timelimit
#SBATCH --mem=10gb # Job memory (1024gb=1tb)
#SBATCH --mail-type=BEGIN,END,FAIL
#SBATCH [email protected]
#SBATCH --partition=wrighton-hi
source /opt/Miniconda2/miniconda2/bin/activate DRAM
DRAM-v.py distill \
--custom_distillate /home/projects/Sporulation_AMG/_sporulation_distillate_module.tsv \
-i /home/projects/Sporulation_AMG/hmp/vMAG/annotations_DRAMv.tsv \
-o /home/projects/Sporulation_AMG/hmp/vMAG/distillate_spor_5 \
--max_auxiliary_score 5
# THIS WILL WORK
# source ~/miniconda3/bin/activate DRAM-new
# DRAM.py distill \
# --custom_distillate /home/projects/Sporulation_AMG/_sporulation_distillate_module.tsv \
# -i /home/projects/Sporulation_AMG/Gregory_2020/output_nouniref_gregory/annotations.tsv \
# -o /home/projects/Sporulation_AMG/Gregory_2020/output_nouniref_gregory/distillate_spor_test_2
########Distillate module provided by daniel:
gene_id gene_description module sheet header subheader potential_amg
K02313 dnaA;chromosomal replication initiator protein DnaA MISC Genetics DNA replication True
K02338 dnaN;DNA polymerase III subunit beta MISC Genetics DNA replication True
K06215 pdxS;pyridoxal biosynthesis lyase PdxS Biosynthesis of pyridoxal phosphate MISC Additional metabolic pathways Biosynthesis of cofactors True
K06306 yaaH;spore germination protein YaaH Spore coat proteins MISC Sporulation Sporulation proteins True
K06317 bofA;sigma-K factor-processing regulator BofA Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06284 abrB;transition state regulatory protein AbrB MISC Regulation of gene expression Transition state regulators True
K02528 ksgA;ribosomal RNA small subunit methyltransferase A rRNA modification and maturation MISC Protein synthesis, modification and degradation Translation True
K06436 yabG;sporulation-specific protease YabG Spore coat proteins MISC Sporulation Sporulation proteins True
K06423 sspF;small acid-soluble spore protein SspF Small acid-soluble spore proteins MISC Sporulation Sporulation proteins True
K00919 ispE;4-diphosphocytidyl-2-c-methyl-d-erythritol kinase Biosynthesis of isoprenoids MISC Lipid metabolism Biosynthesis of lipids True
K09685 purR;Pur operon repressor Biosynthesis/ acquisition of purine nucleotides MISC Nucleotide metabolism Biosynthesis/ acquisition of nucleotides True
K09022 yabJ;enamine/imine deaminase Biosynthesis/ acquisition of branched-chain amino acids MISC Amino acid/ nitrogen metabolism Biosynthesis/ acquisition of amino acids True
K06412 spoVG;septation protein SpoVG MISC Sporulation Sporulation/ other True
K01056 spoVC;peptidyl-tRNA hydrolase MISC Coping with stress General stress proteins (controlled by SigB) True
K03723 mfd;transcription-repair-coupling factor MISC Genetics DNA repair/ recombination True
K04769 spoVT;stage V sporulation protein T Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K13052 divIC;cell division protein DivIC Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K07571 yabR;hypothetical protein Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06382 spoIIE;stage II sporulation protein E Control of sigma factors MISC Regulation of gene expression Sigma factors and their control True
K07114 yabS;hypothetical protein Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K08884 yabT;serine/threonine protein kinase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K19411 mcsA;hypothetical protein Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K19405 mcsB;ATP:guanido phosphotransferase YacI Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K03696 clpC;negative regulator of genetic competence ClpC/MecB Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K07067 disA;DNA integrity scanning protein DisA MISC Sporulation Sporulation/ other True
K03091 sigH;RNA polymerase sigma-H factor Sigma factors MISC RNA synthesis and degradation Transcription True
K01448 cwlD;germination-specific N-acetylmuramoyl-L-alanine amidase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06294 gerD;spore germination protein GerD Additional germination proteins MISC Sporulation Germination True
K06349 kbaA;kinB-signaling pathway activation protein Proteins controlling the activity of the kinases MISC Sporulation phosphorelay True
K01207 nagZ;lipoprotein Utilization of cell wall components MISC Cell envelope and cell division Cell wall degradation/ turnover True
K21469 amiE;hypothetical protein Utilization of cell wall components MISC Cell envelope and cell division Cell wall degradation/ turnover True
K02810 murP;PTS system transporter subunit EIIBC Utilization of cell wall components MISC Cell envelope and cell division Cell wall degradation/ turnover True
K01247 alkA;DNA-3-methyladenine glycosylase MISC Genetics DNA repair/ recombination True
K01449 cwlJ;cell wall hydrolase CwlJ Spore coat proteins MISC Sporulation Sporulation proteins True
K06368 rapJ;response regulator aspartate phosphatase J Protein phosphatases MISC Protein synthesis, modification and degradation Protein modification True
K01182 ycdG;oligo-1,6-glucosidase 2 MISC Coping with stress General stress proteins (controlled by SigB) True
K09190 ycgG;hypothetical protein Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K03293 ycgH;transporter Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K09967 ycgI;hypothetical protein Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K07074 ycgL;hypothetical protein Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K03305 dtpT;transporter Peptide transporter MISC Transporters Transporters/ other True
K06295 gerKA;spore germination protein KA Germinant receptors MISC Sporulation Germination True
K06297 gerKC;spore germination protein KC Germinant receptors MISC Sporulation Germination True
K06296 gerKB;spore germination protein KB Germinant receptors MISC Sporulation Germination True
K06361 rapC;response regulator aspartate phosphatase C MISC Genetics Genetic competence True
K06353 phrC;phosphatase RapC inhibitor MISC Genetics Genetic competence True
K05340 glcU;glucose uptake protein GlcU Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K00034 gdh;glucose 1-dehydrogenase Additional germination proteins MISC Sporulation Germination True
K06351 pxpB;kinase A inhibitor Proteins controlling the activity of the kinases MISC Sporulation phosphorelay True
K06350 pxpC;kipi antagonist Proteins controlling the activity of the kinases MISC Sporulation phosphorelay True
K01929 murF;UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase Biosynthesis of peptidoglycan MISC Cell envelope and cell division Cell wall synthesis True
K06367 rapI;response regulator aspartate phosphatase I Protein phosphatases MISC Protein synthesis, modification and degradation Protein modification True
K03719 lrpA;AsnC family transcriptional regulator MISC Sporulation phosphorelay True
K01077 phoB;alkaline phosphatase 3 Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06324 cotA;spore coat protein A Spore coat proteins MISC Sporulation Sporulation proteins True
K06366 rapH;response regulator aspartate phosphatase H Phosphatases controlling the phosphorelay MISC Sporulation phosphorelay True
K20389 phrH;inhibitor of regulatory cascade MISC Sporulation phosphorelay True
K06332 cotJA;spore coat associated protein CotJA Spore coat proteins MISC Sporulation Sporulation proteins True
K06333 cotJB;spore coat protein CotJB Spore coat proteins MISC Sporulation Sporulation proteins True
K06334 cotJC;spore coat peptide assembly protein CotJC Spore coat proteins MISC Sporulation Sporulation proteins True
K18197 yesW;rhamnogalacturonan endolyase YesW Utilization of pectin MISC Carbon metabolism Utilization of specific carbon sources True
K22933 lplD;alpha-galacturonidase Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K14338 yetO;bifunctional P-450/NADPH-P450 reductase 1 Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K00978 yfnH;glucose-1-phosphate cytidylyltransferase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K11639 citM;Mg(2+)/citrate complex secondary transporter Transporter for organic acids MISC Transporters Transporters/ other True
K06309 yfkT;spore germination protein YfkT MISC Sporulation Germination/ based on similarity True
K06308 yfkR;spore germination protein YfkR MISC Sporulation Germination/ based on similarity True
K06307 yfkQ;hypothetical protein MISC Sporulation Germination/ based on similarity True
K07300 chaA;cation exchanger YfkE Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K01567 pdaA;polysaccharide deacetylase PdaA Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K00627 acoC;dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system Utilization of acetoin MISC Carbon metabolism Utilization of specific carbon sources True
K06425 sspH;small acid-soluble spore protein H Small acid-soluble spore proteins MISC Sporulation Sporulation proteins True
K06428 sspK;small acid-soluble spore protein K Small acid-soluble spore proteins MISC Sporulation Sporulation proteins True
K07038 yfhP;hypothetical protein MISC Membrane proteins True
K10780 fabL;enoyl-[acyl-carrier-protein] reductase [NADPH] FabL Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06422 sspE;small acid-soluble spore protein gamma-type Small acid-soluble spore proteins MISC Sporulation Sporulation proteins True
K06377 spo0M;sporulation-control protein spo0M MISC Sporulation Sporulation/ other True
K03781 katA;vegetative catalase MISC Coping with stress Resistance against oxidative and electrophile stress True
K18979 queG;epoxyqueuosine reductase tRNA modification and maturation MISC Protein synthesis, modification and degradation Translation True
K03216 cspR;tRNA (cytidine(34)-2'-O)-methyltransferase tRNA modification and maturation MISC Protein synthesis, modification and degradation Translation True
K07180 prkA;serine protein kinase PrkA Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K09786 yhbH;stress response UPF0229 protein YhbH Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06180 yhcT;RNA pseudouridine synthase YhcT Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K00864 glpK;glycerol kinase Utilization of glycerol/ glycerol-3-phosphate MISC Carbon metabolism Utilization of specific carbon sources True
K01835 pgcA;phosphoglucomutase Biosynthesis of peptidoglycan MISC Cell envelope and cell division Cell wall synthesis True
K02480 yhcY;sensor histidine kinase Protein kinases MISC Protein synthesis, modification and degradation Protein modification True
K02479 yhcZ;transcriptional regulator Two-component system response regulators MISC Regulation of gene expression Transcription factors and their control True
K06415 spoVR;stage V sporulation protein R Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06419 sspB;small acid-soluble spore protein B Small acid-soluble spore proteins MISC Sporulation Sporulation proteins True
K02495 hemZ;oxygen-independent coproporphyrinogen-III oxidase Biosynthesis of heme/ siroheme MISC Additional metabolic pathways Biosynthesis of cofactors True
K07228 khtT;K(+)/H(+) antiporter subunit KhtT Metal ion transporter MISC Transporters Transporters/ other True
K03698 yhaM;3'-5' exoribonuclease YhaM Exoribonucleases MISC RNA synthesis and degradation RNases True
K09682 scoC;MarR family transcriptional regulator Transcription factors/ other MISC Regulation of gene expression Transcription factors and their control True
K12555 pbpF;penicillin-binding protein 1F Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K18653 ntdA;NTD biosynthesis operon protein NtdA Biosynthesis of antibacterial compounds MISC Additional metabolic pathways Miscellaneous metabolic pathways True
K06304 gerPF;spore germination protein Additional germination proteins MISC Sporulation Germination True
K06303 gerPE;spore germination protein GerPE Additional germination proteins MISC Sporulation Germination True
K06302 gerPD;spore germination protein GerPD Additional germination proteins MISC Sporulation Germination True
K06301 gerPC;spore germination protein GerPC Additional germination proteins MISC Sporulation Germination True
K06300 gerPB;spore germination protein Additional germination proteins MISC Sporulation Germination True
K06299 gerPA;spore germination protein GerPA Additional germination proteins MISC Sporulation Germination True
K01953 asnO;asparagine synthetase 3 Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K02291 yisP;squalene/phytoene synthase MISC Sporulation phosphorelay True
K00860 yisZ;adenylyl-sulfate kinase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K00958 yitA;sulfate adenylyltransferase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K00390 yitB;phosphoadenosine phosphosulfate reductase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K05979 yitC;2-phosphosulfolactate phosphatase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K08097 yitD;phosphosulfolactate synthase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K08221 yitG;MFS transporter Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K15580 oppA;oligopeptide ABC transporter binding lipoprotein MISC Sporulation phosphorelay True
K15581 oppB;oligopeptide transport system permease protein OppB MISC Sporulation phosphorelay True
K15582 oppC;oligopeptide transport system permease protein OppC MISC Sporulation phosphorelay True
K15583 oppD;oligopeptide transport ATP-binding protein OppD MISC Sporulation phosphorelay True
K10823 oppF;oligopeptide transport ATP-binding protein OppF MISC Sporulation phosphorelay True
K08602 pepF;oligoendopeptidase F MISC Sporulation phosphorelay True
K06344 cotZ;spore coat protein Z Spore coat proteins MISC Sporulation Sporulation proteins True
K06343 cotY;spore coat protein Y Spore coat proteins MISC Sporulation Sporulation proteins True
K06342 cotX;spore coat protein X Spore coat proteins MISC Sporulation Sporulation proteins True
K06341 cotW;spore coat protein W Spore coat proteins MISC Sporulation Sporulation proteins True
K06340 cotV;spore coat protein V Spore coat proteins MISC Sporulation Sporulation proteins True
K06339 cotT;spore coat protein Spore coat proteins MISC Sporulation Sporulation proteins True
K01686 uxuA;mannonate dehydratase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K08191 exuT;hexuronate transporter Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K00041 uxaB;altronate oxidoreductase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K01685 uxaA;altronate dehydratase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K07090 yjnA;hypothetical protein Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K06359 rapA;response regulator aspartate phosphatase A Phosphatases controlling the phosphorelay MISC Sporulation phosphorelay True
K06352 phrA;phosphatase RapA inhibitor Other protein controlling the activity of the phosphorelay MISC Sporulation phosphorelay True
K07217 yjqC;hypothetical protein Spore coat proteins MISC Sporulation Sporulation proteins True
K06389 spoIISB;stage II sporulation protein SB MISC Sporulation Sporulation/ other True
K06388 spoIISA;stage II sporulation protein SA Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K05916 hmp;flavohemoprotein MISC Electron transport and ATP synthesis Electron transport/ other True
K24620 thiU;HMP/thiamine-binding protein YkoF Class I ECF transporter MISC Transporters ECF transporter True
K20534 ykoT;glycosyltransferase YkoT Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K01971 ligD;ATP-dependent DNA ligase YkoU Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K10979 ykoV;DNA repair protein YkoV Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06421 sspD;small acid-soluble spore protein D Small acid-soluble spore proteins MISC Sporulation Sporulation proteins True
K03799 htpX;protease HtpX Additional proteins involved in proteolysis MISC Protein synthesis, modification and degradation Proteolysis True
K13533 kinE;sporulation kinase E The kinases MISC Sporulation phosphorelay True
K06376 spo0E;aspartyl-phosphate phosphatase Spo0E Phosphatases controlling the phosphorelay MISC Sporulation phosphorelay True
K13532 kinD;sporulation kinase D The kinases MISC Sporulation phosphorelay True
K06315 splA;transcriptional regulator SplA Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K03716 splB;spore photoproduct lyase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K02491 kinA;sporulation kinase A The kinases MISC Sporulation phosphorelay True
K00841 patA;N-acetyl-LL-diaminopimelate aminotransferase Biosynthesis of peptidoglycan MISC Cell envelope and cell division Cell wall synthesis True
K06437 yknT;sporulation protein cse15 Spore coat proteins MISC Sporulation Sporulation proteins True
K18889 yknU;ABC transporter ATP-binding protein Exporters MISC Transporters ABC transporters True
K18890 yknV;ABC transporter ATP-binding protein Exporters MISC Transporters ABC transporters True
K07698 kinC;sporulation kinase C The kinases MISC Sporulation phosphorelay True
K01462 defB;peptide deformylase Conversion of S-methyl cysteine to cysteine MISC Additional metabolic pathways Sulfur metabolism True
K07175 ylaK;hypothetical protein Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K01425 ylaM;glutaminase Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K02259 ctaA;heme A synthase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K07001 ylbK;NTE family protein YlbK MISC Poorly characterized/ putative enzymes True
K08384 spoVD;stage V sporulation protein D Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K03588 spoVE;stage V sporulation protein E Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K02563 murG;UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K00075 murB;UDP-N-acetylenolpyruvoylglucosamine reductase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K03589 divIB;cell division protein DivIB Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K03590 ftsA;cell division protein FtsA Other genes MISC Cell envelope and cell division Cell division True
K03531 ftsZ;cell division protein FtsZ Other genes MISC Cell envelope and cell division Cell division True
K06383 spoIIGA;sporulation sigma-E factor-processing peptidase MISC Sporulation Sporulation/ other True
K04074 divIVA;septum site-determining protein DivIVA The Min system MISC Cell envelope and cell division Cell division True
K01537 yloB;calcium-transporting ATPase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K09777 remA;hypothetical protein Transcription factors/ other MISC Regulation of gene expression Transcription factors and their control True
K12132 prkC;serine/threonine protein kinase Additional germination proteins MISC Sporulation Germination True
K00949 yloS;thiamine pyrophosphokinase Biosynthesis/ acquisition of thiamine MISC Additional metabolic pathways Biosynthesis of cofactors True
K06414 spoVM;stage V sporulation protein M Spore coat proteins MISC Sporulation Sporulation proteins True
K00059 fabG;3-oxoacyl-[acyl-carrier-protein] reductase FabG Biosynthesis of fatty acids MISC Lipid metabolism Biosynthesis of lipids True
K03529 smc;chromosome partition protein Smc MISC Genetics DNA condensation/ segregation True
K03110 ftsY;signal recognition particle receptor FtsY Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K03706 codY;GTP-sensing transcriptional pleiotropic repressor CodY Transcription factors/ other MISC Regulation of gene expression Transcription factors and their control True
K11749 rasP;zinc metalloprotease RasP Other genes MISC Cell envelope and cell division Cell division True
K06410 spoVFA;dipicolinate synthase subunit A Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06411 spoVFB;dipicolinate synthase subunit B Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K00133 asd;aspartate-semialdehyde dehydrogenase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K00928 dapG;aspartokinase 1 Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K01714 dapA;4-hydroxy-tetrahydrodipicolinate synthase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K03466 spoIIIE;spore DNA translocase MISC Sporulation Sporulation/ other True
K09769 ymdB;hypothetical protein MISC Exponential and early post-exponential lifestyles Biofilm formation True
K06416 spoVS;stage V sporulation protein S MISC Sporulation Sporulation/ other True
K06328 cotE;spore coat protein E Spore coat proteins MISC Sporulation Sporulation proteins True
K00791 miaA;tRNA dimethylallyltransferase tRNA modification and maturation MISC Protein synthesis, modification and degradation Translation True
K06413 spoVK;stage V sporulation protein K Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K01775 yncD;alanine racemase 2 Spore coat proteins MISC Sporulation Sporulation proteins True
K06326 cotC;spore coat protein C Spore coat proteins MISC Sporulation Sporulation proteins True
K06310 yndD;hypothetical protein MISC Sporulation Germination/ based on similarity True
K06311 yndE;spore germination protein YndE MISC Sporulation Germination/ based on similarity True
K06312 yndF;spore germination protein YndF MISC Sporulation Germination/ based on similarity True
K01356 lexA;lexa repressor MISC Genetics DNA repair/ recombination True
K06335 cotM;spore coat protein M Spore coat proteins MISC Sporulation Sporulation proteins True
K06433 sspP;small acid-soluble spore protein P Small acid-soluble spore proteins MISC Sporulation Sporulation proteins True
K06432 sspO;small acid-soluble spore protein O Small acid-soluble spore proteins MISC Sporulation Sporulation proteins True
K06431 sspN;small acid-soluble spore protein N Small acid-soluble spore proteins MISC Sporulation Sporulation proteins True
K06434 tlp;small acid-soluble spore protein Tlp Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K07097 nrnB;oligoribonuclease NrnB Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K01640 yngG;hydroxymethylglutaryl-CoA lyase YngG Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K01961 yngH;biotin carboxylase 2 Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K00666 yngI;acyl-CoA synthetase YngI Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K23598 iseA;hypothetical protein Autolysis MISC Cell envelope and cell division Cell wall degradation/ turnover True
K00931 proJ;glutamate 5-kinase Biosynthesis/ acquisition of proline MISC Amino acid/ nitrogen metabolism Biosynthesis/ acquisition of amino acids True
K00286 proH;pyrroline-5-carboxylate reductase 1 Biosynthesis/ acquisition of proline MISC Amino acid/ nitrogen metabolism Biosynthesis/ acquisition of amino acids True
K00483 yoaI;4-hydroxyphenylacetate 3-monooxygenase Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K01569 oxdD;oxalate decarboxylase OxdD Spore coat proteins MISC Sporulation Sporulation proteins True
K06369 rapK;response regulator aspartate phosphatase K MISC Genetics Genetic competence True
K18115 sqhC;sporulenol synthase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K04564 sodF;superoxide dismutase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K18672 cdaS;hypothetical protein Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K03299 yojA;permease YojA MISC Membrane proteins True
K03797 ctpA;carboxy-terminal processing protease CtpA Additional proteins involved in proteolysis MISC Protein synthesis, modification and degradation Proteolysis True
K01843 kamA;L-lysine 2,3-aminomutase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K21935 yodP;N-acetyltransferase YodP Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K01438 yodQ;metallohydrolase YodQ Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06323 cgeE;N-acetyltransferase CgeE Spore coat proteins MISC Sporulation Sporulation proteins True
K06322 cgeD;spore maturation protein CgeD Spore coat proteins MISC Sporulation Sporulation proteins True
K06321 cgeC;spore maturation protein CgeC Spore coat proteins MISC Sporulation Sporulation proteins True
K06319 cgeA;spore maturation protein CgeA Spore coat proteins MISC Sporulation Sporulation proteins True
K06320 cgeB;spore maturation protein CgeB Spore coat proteins MISC Sporulation Sporulation proteins True
K06420 sspC;small acid-soluble spore protein C Small acid-soluble spore proteins MISC Sporulation Sporulation proteins True
K03469 ypeP;hypothetical protein Spore coat proteins MISC Sporulation Sporulation proteins True
K06429 sspL;small acid-soluble spore protein L Small acid-soluble spore proteins MISC Sporulation Sporulation proteins True
K23786 exoR;5'-3' exonuclease MISC Genetics DNA replication True
K16168 bpsB;hypothetical protein Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K16167 bpsA;chalcone synthase Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K06327 cotD;spore coat protein D Spore coat proteins MISC Sporulation Sporulation proteins True
K06430 sspM;small acid-soluble spore protein M Small acid-soluble spore proteins MISC Sporulation Sporulation proteins True
K03524 birA;bifunctional protein BirA Biosynthesis of fatty acids MISC Lipid metabolism Biosynthesis of lipids True
K00974 cca;CCA-adding enzyme tRNA modification and maturation MISC Protein synthesis, modification and degradation Translation True
K00754 bshA;glycosyltransferase YpjH Biosynthesis of bacillithiol MISC Additional metabolic pathways Miscellaneous metabolic pathways True
K01463 bshB1;deacetylase YpjG Biosynthesis of bacillithiol MISC Additional metabolic pathways Miscellaneous metabolic pathways True
K01734 mgsA;methylglyoxal synthase Glycolysis MISC Carbon metabolism Carbon core metabolism True
K00215 dapB;4-hydroxy-tetrahydrodipicolinate reductase Biosynthesis of peptidoglycan MISC Cell envelope and cell division Cell wall synthesis True
K00940 ndk;nucleoside diphosphate kinase MISC Nucleotide metabolism Nucleotide metabolism/ other True
K03183 menH;demethylmenaquinone methyltransferase Biosynthesis of menaquinone MISC Additional metabolic pathways Biosynthesis of cofactors True
K06398 spoIVA;stage IV sporulation protein A Spore coat proteins MISC Sporulation Sporulation proteins True
K05739 seaA;hypothetical protein Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06313 ypeB;sporulation protein YpeB Additional germination proteins MISC Sporulation Germination True
K16511 ypbH;adapter protein MecA 2 Additional proteins involved in proteolysis MISC Protein synthesis, modification and degradation Proteolysis True
K06374 spmB;spore maturation protein B Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06373 spmA;spore maturation protein A Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K07258 dacB;D-alanyl-D-alanine carboxypeptidase DacB Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K00794 ribH;6,7-dimethyl-8-ribityllumazine synthase Biosynthesis/ acquisition of riboflavin/ FAD MISC Additional metabolic pathways Biosynthesis of cofactors True
K03100 sipS;signal peptidase I S MISC Protein synthesis, modification and degradation Protein secretion True
K01586 lysA;diaminopimelate decarboxylase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06408 spoVAF;stage V sporulation protein AF Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06407 spoVAEA;stage V sporulation protein AE Additional germination proteins MISC Sporulation Germination True
K06406 spoVAD;stage V sporulation protein AD Additional germination proteins MISC Sporulation Germination True
K06405 spoVAC;stage V sporulation protein AC Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06404 spoVAB;stage V sporulation protein AB Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06403 spoVAA;stage V sporulation protein AA Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06379 spoIIAB;anti-sigma F factor Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06378 spoIIAA;anti-sigma F factor antagonist Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K04763 ripX;tyrosine recombinase XerD MISC Genetics DNA condensation/ segregation True
K06384 spoIIM;stage II sporulation protein M Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K05606 yqjC;hypothetical protein Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K03417 mmgF;methylisocitrate lyase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K01720 mmgE;2-methylcitrate dehydratase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K01647 mmgD;2-methylcitrate synthase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K18244 mmgC;acyl-CoA dehydrogenase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K00074 mmgB;3-hydroxybutyryl-CoA dehydrogenase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K00626 mmgA;acetyl-CoA acetyltransferase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K07699 spo0A;stage 0 sporulation protein A MISC Sporulation phosphorelay True
K06399 spoIVB;peptidase S55 Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06397 spoIIIAH;stage III sporulation protein AH Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06396 spoIIIAG;stage III sporulation protein AG Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06395 spoIIIAF;stage III sporulation protein AF Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06394 spoIIIAE;stage III sporulation protein AE Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06393 spoIIIAD;stage III sporulation protein AD Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06392 spoIIIAC;stage III sporulation protein AC Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06391 spoIIIAB;stage III sporulation protein AB Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06390 spoIIIAA;stage III sporulation protein AA Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K01262 papA;peptidase YqhT Utilization of peptides MISC Amino acid/ nitrogen metabolism Utilization of nitrogen sources other than amino acids True
K00283 gcvPB;glycine dehydrogenase subunit 2 Utilization of threonine/ glycine MISC Amino acid/ nitrogen metabolism Utilization of amino acids True
K00282 gcvPA;glycine dehydrogenase subunit 1 Utilization of threonine/ glycine MISC Amino acid/ nitrogen metabolism Utilization of amino acids True
K00605 gcvT;aminomethyltransferase Utilization of threonine/ glycine MISC Amino acid/ nitrogen metabolism Utilization of amino acids True
K06372 sinI;SinR antagonist SinI Control of transcription factor (other than two-component system) MISC Regulation of gene expression Transcription factors and their control True
K19449 sinR;XRE family transcriptional regulator Transcription factors/ other MISC Regulation of gene expression Transcription factors and their control True
K06336 tasA;spore coat protein N MISC Exponential and early post-exponential lifestyles Biofilm formation True
K19433 tapA;hypothetical protein MISC Exponential and early post-exponential lifestyles Biofilm formation True
K01308 yqgT;hypothetical protein Endopeptidases MISC Cell envelope and cell division Cell wall degradation/ turnover True
K08222 yqgE;hypothetical protein Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K03526 ispG;4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K01151 nfo;endonuclease IV MISC Genetics DNA repair/ recombination True
K03086 sigA;RNA polymerase sigma factor RpoD Sigma factors MISC RNA synthesis and degradation Transcription True
K06438 yqfD;hypothetical protein Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K03324 yqeW;hypothetical protein Uptake of other small ions MISC Transporters Transporters/ other True
K06385 spoIIP;stage II sporulation protein P Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06012 gpr;germination protease Additional germination proteins MISC Sporulation Germination True
K02239 comER;ComE operon protein 4 Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K06371 sda;sporulation inhibitor sda Proteins controlling the activity of the kinases MISC Sporulation phosphorelay True
K01447 cwlH;N-acetylmuramoyl-L-alanine amidase CwlH Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K00033 yqeC;6-phosphogluconate dehydrogenase YqeC Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K06400 spoIVCA;DNA recombinase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K03741 arsC;arsenate reductase ArsC MISC Coping with stress Resistance against toxic metals True
K03325 arsB;arsenite resistance protein ArsB Metal ion transporter MISC Transporters Transporters/ other True
K03892 arsR;arsenical resistance operon repressor Transcription factors/ other MISC Regulation of gene expression Transcription factors and their control True
K06363 rapE;response regulator aspartate phosphatase E Phosphatases controlling the phosphorelay MISC Sporulation phosphorelay True
K06354 phrE;phosphatase RapE inhibitor Other protein controlling the activity of the phosphorelay MISC Sporulation phosphorelay True
K06440 yraG;spore coat protein F Spore coat protein/ based on similarity MISC Sporulation Sporulation proteins True
K00121 adhB;zinc-type alcohol dehydrogenase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06439 yraD;spore coat protein F Spore coat protein/ based on similarity MISC Sporulation Sporulation proteins True
K17217 mccB;cystathionine gamma-lyase Biosynthesis/ acquisition of cysteine MISC Amino acid/ nitrogen metabolism Biosynthesis/ acquisition of amino acids True
K17216 mccA;O-acetylserine dependent cystathionine beta-synthase Biosynthesis/ acquisition of cysteine MISC Amino acid/ nitrogen metabolism Biosynthesis/ acquisition of amino acids True
K21468 pbpI;penicillin-binding protein 4B Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K10041 glnQ;glutamine transport ATP-binding protein GlnQ Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K10039 glnH;ABC transporter substrate-binding protein GlnH Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K10040 glnM;glutamine ABC transporter permease protein GlnM Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06409 spoVB;stage V sporulation protein B Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06318 bofC;general stress protein BofC Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K03310 yrbD;sodium/proton-dependent alanine carrier protein YrbD Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K06345 coxA;sporulation cortex protein CoxA Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06370 safA;spoivd-associated factor A Spore coat proteins MISC Sporulation Sporulation proteins True
K03517 nadA;quinolinate synthase A Biosynthesis of NAD(P) MISC Additional metabolic pathways Biosynthesis of cofactors True
K03979 obg;GTPase ObgE MISC Sporulation phosphorelay True
K06375 spo0B;sporulation initiation phosphotransferase B The phosphotransferases MISC Sporulation phosphorelay True
K06402 spoIVFB;stage IV sporulation protein FB Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06401 spoIVFA;stage IV sporulation protein FA Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K03609 minD;septum site-determining protein MinD The Min system MISC Cell envelope and cell division Cell division True
K03610 minC;septum site-determining protein MinC The Min system MISC Cell envelope and cell division Cell division True
K03569 mreB;rod shape-determining protein MreB MISC Cell envelope and cell division Cell shape True
K06380 spoIIB;stage II sporulation protein B MISC Sporulation Sporulation/ other True
K06417 spoVID;stage VI sporulation protein D Spore coat proteins MISC Sporulation Sporulation proteins True
K04076 lonB;Lon protease 2 Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K03829 ysnE;N-acetyltransferase YsnE MISC Poorly characterized/ putative enzymes True
K07095 ysnB;metallophosphoesterase MISC Proteins of unknown function True
K02428 ysnA;non-canonical purine NTP pyrophosphatase MISC Poorly characterized/ putative enzymes True
K00989 rph;ribonuclease PH Exoribonucleases MISC RNA synthesis and degradation RNases True
K06298 gerM;spore germination protein GerM Additional germination proteins MISC Sporulation Germination True
K01776 racE;glutamate racemase Biosynthesis of peptidoglycan MISC Cell envelope and cell division Cell wall synthesis True
K01994 gerE;spore germination protein GerE Additional germination proteins MISC Sporulation Germination True
K06426 sspI;small acid-soluble spore protein I Small acid-soluble spore proteins MISC Sporulation Sporulation proteins True
K02647 ysfB;hypothetical protein Transcription factor/ other/ based on similarity MISC Regulation of gene expression Transcription factors and their control True
K03346 dnaB;replication initiation and membrane attachment protein MISC Genetics DNA replication True
K00134 gapB;glyceraldehyde-3-phosphate dehydrogenase 2 Gluconeogenesis MISC Carbon metabolism Carbon core metabolism True
K07636 phoR;alkaline phosphatase synthesis sensor protein PhoR Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K07658 phoP;alkaline phosphatase synthesis transcriptional regulatory protein PhoP Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06881 nrnA;bifunctional oligoribonuclease/PAP phosphatase NrnA Exoribonucleases MISC RNA synthesis and degradation RNases True
K06418 sspA;small acid-soluble spore protein A Small acid-soluble spore proteins MISC Sporulation Sporulation proteins True
K05020 opuD;glycine betaine transporter OpuD Uptake of compatible solutes MISC Transporters Transporters/ other True
K16188 ytpB;tetraprenyl-beta-curcumene synthase MISC Coping with stress Cell envelope stress proteins (controlled by SigM, V, W, X, Y) True
K01048 ytpA;phospholipase YtpA MISC Coping with stress Cell envelope stress proteins (controlled by SigM, V, W, X, Y) True
K02051 ytlA;ABC transporter substrate-binding protein YtlA Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K02049 ytlC;ABC transporter ATP-binding protein Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K02050 ytlD;ABC transporter permease Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K03574 rppH;8-oxo-dGTP diphosphatase YtkD Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K00425 ythA;cytochrome bd menaquinol oxidase subunit I Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K00426 ythB;cytochrome bd menaquinol oxidase subunit II Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K00963 ytdA;UTP--glucose-1-phosphate uridylyltransferase Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K00012 ytcA;UDP-glucose 6-dehydrogenase YtcA Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K06337 cotS;spore coat protein S Spore coat proteins MISC Sporulation Sporulation proteins True
K06338 cotSA;spore coat protein SA Spore coat proteins MISC Sporulation Sporulation proteins True
K06331 cotI;spore coat protein I Spore coat proteins MISC Sporulation Sporulation proteins True
K00688 glgP;glycogen phosphorylase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K00703 glgA;glycogen synthase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K00975 glgD;glycogen biosynthesis protein GlgD Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K00700 glgB;1,4-alpha-glucan branching enzyme GlgB Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K07192 floT;hypothetical protein MISC Sporulation Sporulation/ other True
K00456 yubC;cysteine dioxygenase Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K00686 tgl;protein-glutamine gamma-glutamyltransferase Spore coat proteins MISC Sporulation Sporulation proteins True
K01187 yugT;oligo-1,6-glucosidase 3 Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K03699 yugS;hypothetical protein Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K06973 yugP;membrane protease YugP Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K10716 yugO;potassium channel protein YugO Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K09779 yuzA;hypothetical protein Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K14155 patB;cystathionine beta-lyase Biosynthesis/ acquisition of methionine/ S-adenosylmethionine MISC Amino acid/ nitrogen metabolism Biosynthesis/ acquisition of amino acids True
K07697 kinB;sporulation kinase B The kinases MISC Sporulation phosphorelay True
K06347 kapB;kinase-associated lipoprotein B Proteins controlling the activity of the kinases MISC Sporulation phosphorelay True
K06348 kapD;3'-5' exonuclease KapD MISC Sporulation phosphorelay True
K00259 ald;alanine dehydrogenase Utilization of alanine/ serine MISC Amino acid/ nitrogen metabolism Utilization of amino acids True
K01255 yuiE;cytosol aminopeptidase MISC Poorly characterized/ putative enzymes True
K03885 yumB;NADH dehydrogenase-like protein YumB Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K07734 paiB;protease synthase and sporulation protein PAI 2 Transcription factors/ other MISC Regulation of gene expression Transcription factors and their control True
K22441 paiA;protease synthase and sporulation negative regulatory protein PAI 1 Metabolism of polyamines MISC Additional metabolic pathways Miscellaneous metabolic pathways True
K21472 lytH;L-Ala--D-Glu endopeptidase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K01466 pucH;allantoinase MISC Nucleotide metabolism Utilization of nucleotides True
K16838 pucL;urate oxidase with peroxide reductase N-terminal domain MISC Nucleotide metabolism Utilization of nucleotides True
K06424 sspG;small acid-soluble spore protein G Small acid-soluble spore proteins MISC Sporulation Sporulation proteins True
K00318 fadM;proline dehydrogenase 1 Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K06288 gerAA;spore germination protein A1 Germinant receptors MISC Sporulation Germination True
K06289 gerAB;spore germination protein A2 Germinant receptors MISC Sporulation Germination True
K06290 gerAC;spore germination protein A3 Germinant receptors MISC Sporulation Germination True
K06427 sspJ;small acid-soluble spore protein J Small acid-soluble spore proteins MISC Sporulation Sporulation proteins True
K01118 azoR2;FMN-dependent NADH-azoreductase 2 Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K03664 smpB;SsrA-binding protein Translation/ other MISC Protein synthesis, modification and degradation Translation True
K22299 rghR;HTH-type transcriptional repressor RghR MISC Sporulation phosphorelay True
K15633 pgm;2,3-bisphosphoglycerate-independent phosphoglycerate mutase Glycolysis MISC Carbon metabolism Carbon core metabolism True
K01803 tpi;triosephosphate isomerase Glycolysis MISC Carbon metabolism Carbon core metabolism True
K00927 pgk;phosphoglycerate kinase Substrate-level phosphorylation MISC Electron transport and ATP synthesis ATP synthesis True
K02103 araR;transcriptional repressor Utilization of arabinan/ arabinose/ arabitol MISC Carbon metabolism Utilization of specific carbon sources True
K15771 mdxF;maltodextrin transport system permease protein MdxF Importers MISC Transporters ABC transporters True
K13292 lgt;prolipoprotein diacylglyceryl transferase Additional germination proteins MISC Sporulation Germination True
K09811 ftsX;cell division protein FtsX MISC Sporulation phosphorelay True
K09812 ftsE;cell division ATP-binding protein FtsE MISC Sporulation phosphorelay True
K16699 tuaH;teichuronic acid biosynthesis glycosyltransferase TuaH Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K16698 tuaG;teichuronic acid biosynthesis glycosyltransferase TuaG Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K16706 tuaF;teichuronic acid biosynthesis protein TuaF Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K23989 lytD;beta-N-acetylglucosaminidase Autolysis MISC Cell envelope and cell division Cell wall degradation/ turnover True
K06291 gerBA;spore germination protein B1 Germinant receptors MISC Sporulation Germination True
K06292 gerBB;spore germination protein B2 Germinant receptors MISC Sporulation Germination True
K06293 gerBC;spore germination protein B3 Germinant receptors MISC Sporulation Germination True
K03893 ywrK;arsenical pump membrane protein Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K06325 cotB;spore coat protein B Spore coat proteins MISC Sporulation Sporulation proteins True
K06330 cotH;inner spore coat protein H Spore coat proteins MISC Sporulation Sporulation proteins True
K07240 ywrA;transporter MISC Sporulation Sporulation/ other True
K05982 ywqL;endonuclease V Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K06362 rapD;response regulator aspartate phosphatase D MISC Genetics Genetic competence True
K06283 spoIIID;stage III sporulation protein D Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06435 usd;protein usd Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06386 spoIIQ;stage II sporulation protein Q Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06131 clsA;cardiolipin synthase Biosynthesis of phospholipids MISC Lipid metabolism Biosynthesis of lipids True
K06360 rapB;response regulator aspartate phosphatase B Phosphatases controlling the phosphorelay MISC Sporulation phosphorelay True
K06381 spoIID;stage II sporulation protein D Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K07566 tsaC;tRNA threonylcarbamoyladenosine biosynthesis protein YwlC MISC Genetics Newly identified competence genes True
K06387 spoIIR;stage II sporulation protein R Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K11686 racA;chromosome-anchoring protein RacA Other genes MISC Cell envelope and cell division Cell division True
K02490 spo0F;sporulation initiation phosphotransferase F The phosphotransferases MISC Sporulation phosphorelay True
K13281 ywjD;UV DNA damage endonuclease Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06364 rapF;response regulator aspartate phosphatase F MISC Genetics Genetic competence True
K00797 speE;spermidine synthase Metabolism of polyamines MISC Additional metabolic pathways Miscellaneous metabolic pathways True
K21464 pbpG;penicillin-binding protein 2D Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06314 rsfA;prespore-specific transcriptional regulator RsfA Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K01790 spsL;spore coat polysaccharide biosynthesis protein SpsL Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K00067 spsK;spore coat polysaccharide biosynthesis protein SpsK Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K01710 spsJ;dTDP-glucose 4,6-dehydratase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K00973 spsI;dTDP-glucose pyrophosphorylase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K07257 spsF;spore coat polysaccharide biosynthesis protein SpsF Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K06305 gerQ;spore coat protein GerQ Spore coat proteins MISC Sporulation Sporulation proteins True
K00128 ywdH;aldehyde dehydrogenase YwdH MISC Poorly characterized/ putative enzymes True
K14393 ywcA;symporter Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K02761 ywbA;permease IIC component YwbA Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K16012 cydD;ATP-binding/permease protein CydD Regulatory ABC transporters MISC Transporters ABC transporters True
K00019 yxjF;oxidoreductase Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K01029 scoB;succinyl-CoA:3-ketoacid coenzyme A transferase subunit B Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K01028 scoA;succinyl-CoA:3-ketoacid coenzyme A transferase subunit A Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K03300 citH;citrate transporter Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K06902 yxiO;MFS transporter MISC Membrane proteins True
K05592 deaD;ATP-dependent RNA helicase DbpA MISC RNA synthesis and degradation DEAD-box RNA helicases True
K00756 pdp;pyrimidine-nucleoside phosphorylase MISC Nucleotide metabolism Utilization of nucleotides True
K06608 iolR;HTH-type transcriptional regulator IolR Utilization of inositol MISC Carbon metabolism Utilization of specific carbon sources True
K06365 rapG;response regulator aspartate phosphatase G Protein phosphatases MISC Protein synthesis, modification and degradation Protein modification True
K06329 cotF;spore coat protein F Spore coat proteins MISC Sporulation Sporulation proteins True
K06888 yyaL;hypothetical protein Newly identified sporulation proteins (based on transcription profiling) MISC Sporulation Sporulation proteins True
K01142 exoA;exodeoxyribonuclease Sporulation proteins/ other MISC Sporulation Sporulation proteins True
K03497 parB;stage 0 sporulation protein J MISC Sporulation Sporulation/ other True
K03496 parA;sporulation initiation inhibitor protein Soj MISC Sporulation Sporulation/ other True
K03495 gidA;tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG tRNA modification and maturation MISC Protein synthesis, modification and degradation Translation True
K03650 thdF;tRNA modification GTPase MnmE tRNA modification and maturation MISC Protein synthesis, modification and degradation Translation True
K06346 jag;protein jag MISC Sporulation Sporulation/ other True
K03217 yidC1;membrane protein insertase MisCA MISC Sporulation Sporulation/ other True
K02343 DNA polymerase III subunits gamma and tau sporulation MISC sporulation sporulation True
K09747 DNA binding protein sporulation MISC sporulation sporulation True
K00991 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase sporulation MISC sporulation sporulation True
K01770 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase sporulation MISC sporulation sporulation True
K03431 Phosphoglucosamine mutase sporulation MISC sporulation sporulation True
K00820 Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] sporulation MISC sporulation sporulation True
K02412 ATP synthase subunit beta FliI sporulation MISC sporulation sporulation True
K00876 putative uridine kinase sporulation MISC sporulation sporulation True
K00131 Glyceraldehyde-3-phosphate dehydrogenase (NADP(+)) (GADPH) sporulation MISC sporulation sporulation True
K01420 Transcriptional regulator, Crp family sporulation MISC sporulation sporulation True
K03798 putative ATP-dependent peptidase, M41 family sporulation MISC sporulation sporulation True
K03657 putative DNA helicase, UvrD/REP type sporulation MISC sporulation sporulation True
K07301 putative Ca2+/Na+ antiporter sporulation MISC sporulation sporulation True
K02335 DNA polymerase I (POLI) sporulation MISC sporulation sporulation True
K00859 Dephospho-CoA kinase (Dephosphocoenzyme A kinase) sporulation MISC sporulation sporulation True
K08309 putative lytic transglycosylase-like protein sporulation MISC sporulation sporulation True
K05515 putative peptidoglycan glycosyltransferase sporulation MISC sporulation sporulation True
K03311 Branched chain amino acid transport system carrier protein sporulation MISC sporulation sporulation True
K07447 putative Holliday junction resolvase sporulation MISC sporulation sporulation True
K03537 putative small acid-soluble spore protein SASP sporulation MISC sporulation sporulation True
K00965 putative galactose-1-phosphate uridylyltransferase sporulation MISC sporulation sporulation True
K16203 putative amino acid amidase sporulation MISC sporulation sporulation True
K01297 putative muramoyltetrapeptide carboxypeptidase,S66 family sporulation MISC sporulation sporulation True
K01126 Glycerophosphoryl diester phosphodiesterase sporulation MISC sporulation sporulation True
K01921 D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) sporulation MISC sporulation sporulation True
K09936 putative membrane protein sporulation MISC sporulation sporulation True
K04759 Ferrous iron transport protein B sporulation MISC sporulation sporulation True
K04758 Ferrous iron transport protein sporulation MISC sporulation sporulation True
K00640 Serine acetyltransferase (SAT) sporulation MISC sporulation sporulation True
K01304 Pyrrolidone-carboxylate peptidase sporulation MISC sporulation sporulation True
K21583 Glycine/sarcosine/betaine reductase complex,protein B, alpha and beta subunits sporulation MISC sporulation sporulation True
K03312 Sodium/glutamate symporter sporulation MISC sporulation sporulation True
K09861 conserved hypothetical protein, UPF0246 family sporulation MISC sporulation sporulation True
K01736 Chorismate synthase (5-enolpyruvylshikimate-3-phosphate phospholyase) sporulation MISC sporulation sporulation True
K14170 Bifunctional P-protein, chorismate mutase/prephenate dehydratase sporulation MISC sporulation sporulation True
K03790 putative Acyl-CoA N-acyltransferase sporulation MISC sporulation sporulation True
K13275 Intracellular serine protease sporulation MISC sporulation sporulation True
K11105 putative Na(+)/H(+) antiporter sporulation MISC sporulation sporulation True
K06901 Xanthine/uracil/thiamine/ascorbate permease family protein sporulation MISC sporulation sporulation True
K00806 Undecaprenyl pyrophosphate synthetase sporulation MISC sporulation sporulation True
K01893 Asparaginyl-tRNA synthetase (Asparagine--tRNA ligase) (AsnRS) sporulation MISC sporulation sporulation True
K02770 PTS system, fructose-specific IIABC component sporulation MISC sporulation sporulation True
K00882 Fructose 1-phosphate kinase sporulation MISC sporulation sporulation True
K00177 putative flavodoxin/ferredoxin oxidoreductase gamma subunit sporulation MISC sporulation sporulation True
K00366 putative nitrite/sulphite reductase sporulation MISC sporulation sporulation True
K03595 GTP-binding protein Era sporulation MISC sporulation sporulation True
K01489 Cytidine deaminase (Cytidine aminohydrolase) (CDA) sporulation MISC sporulation sporulation True
K00901 putative diacylglycerol kinase sporulation MISC sporulation sporulation True
K07042 putative metal-dependent hydrolase sporulation MISC sporulation sporulation True
K06217 PhoH-like protein sporulation MISC sporulation sporulation True
K05770 putative transmembrane signaling protein,TspO/MBR family sporulation MISC sporulation sporulation True
K25026 putative glucokinase, ROK family sporulation MISC sporulation sporulation True
K03294 putative amino acid/polyamine transporter sporulation MISC sporulation sporulation True
K11751 putative membrane-associated 5'-nucleotidase/phosphoesterase sporulation MISC sporulation sporulation True
K22278 putative oligosaccharide deacetylase sporulation MISC sporulation sporulation True
K05810 conserved hypothetical protein sporulation MISC sporulation sporulation True
K07738 Transcriptional regulator, repressor NrdR family sporulation MISC sporulation sporulation True
K01928 UDP-N-acetylmuramyl-tripeptide synthetase sporulation MISC sporulation sporulation True
K20118 PTS system, glucose-specific IIBC component sporulation MISC sporulation sporulation True
K03980 Transmembrane virulence factor, MviN family protein sporulation MISC sporulation sporulation True
K03594 putative bacterioferritin sporulation MISC sporulation sporulation True
K01464 D-hydantoinase (Dihydropyrimidinase) sporulation MISC sporulation sporulation True
K24206 putative purine permease sporulation MISC sporulation sporulation True
K06015 putative D-aminoacylase sporulation MISC sporulation sporulation True
K01751 Diaminopropionate ammonia-lyase sporulation MISC sporulation sporulation True
K07507 putative magnesium transport ATPase, MgtC/SapB family sporulation MISC sporulation sporulation True
K06949 putative EngC-like GTPase sporulation MISC sporulation sporulation True
K09762 putative sporulation transcription regulator whiA sporulation MISC sporulation sporulation True
K01934 5-formyltetrahydrofolate cyclo-ligase sporulation MISC sporulation sporulation True
K07171 Endoribonuclease toxin sporulation MISC sporulation sporulation True
K07723 putative antitoxin EndoAI sporulation MISC sporulation sporulation True
K00997 Holo-[acyl-carrier-protein] synthase sporulation MISC sporulation sporulation True
K02112 ATP synthase subunit beta (ATPase subunit beta) (ATP synthase F1 sector subunit beta) sporulation MISC sporulation sporulation True
K07238 putative zinc/iron permease sporulation MISC sporulation sporulation True
K01258 putative peptidase T, M20B family sporulation MISC sporulation sporulation True
K01585 putative arginine decarboxylase sporulation MISC sporulation sporulation True
K19689 Aminopeptidase sporulation MISC sporulation sporulation True
K01759 putative glyoxalase sporulation MISC sporulation sporulation True