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Makefile_common
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Makefile_common
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#
# common (architecture-independent) Makefile for FMRI software
#
# Copyright (c) 1996 Pittsburgh Supercomputing Center
# Written by Greg Hood, PSC, Sept. 1996
#
# The following sets several defaults, and then overrides them from
# the values set in config.mk
FFTW_INCLUDE =
FFTW_LIB = -lfftw
FFTW_CFLAGS = ""
AFS_FLAG=
SPLUSDIRS=
SPLUSEXE= : # no-op
PNG_CFLAGS = ""
PNG_LIBS = ""
TIFF_CFLAGS = ""
TIFF_LIBS = ""
SWIG = $(FMRI)/src/fiat_scripts/dummy_swig.csh
include config.mk
CFLAGS = $(ARCH_CFLAGS) -D$(ARCH) -I$(FMRI)/include/$(ARCH) \
$(PAR_CFLAGS) $(FFTW_CFLAGS) $(FIFF_CFLAGS) $(NFFT_CFLAGS) \
$(PNG_CFLAGS) $(TIFF_CFLAGS) $(FITSIO_CFLAGS)
LFLAGS = $(ARCH_LFLAGS) $(PAR_LFLAGS)
LIBS = $(ARCH_LIBS) $(PAR_LIBS) $(NFFT_LIBS) $(PNG_LIBS) $(TIFF_LIBS) \
$(FITSIO_LIBS)
ARFLAGS = $(ARCH_ARFLAGS)
SHELL = /bin/sh
DEFINES = ARCH=$(ARCH) FMRI="$(FMRI)" CC="$(CC)" \
FMRI_CFLAGS="$(CFLAGS) $(AFS_FLAG) $(FFTW_INCLUDE)" LD="$(LD)" \
FMRI_LFLAGS="$(LFLAGS)" \
FMRI_LIBS="$(LIBS) $(FFTW_LIB) -lm" AR="$(AR)" ARFLAGS="$(ARFLAGS)" \
RANLIB="$(RANLIB)" \
UNIX_STAT_HOME="$(UNIX_STAT_HOME)" \
AFS_FLAG="$(AFS_FLAG)" SPLUSEXE="$(SPLUSEXE)" \
LAPACK_LIBS="$(LAPACK_LIBS)" NEWER="$(NEWER)" \
SWIG="$(SWIG)" \
SHR_EXT="$(SHR_EXT)" SHR_LD="$(SHR_LD)" PYTHON_INCLUDE="$(PYTHON_INCLUDE)"
PREREQ_SRCDIRS = util libcrg libmri libdcdf fmri
FIAT_SRCDIRS = reader mri_util mri_anova \
misc image_proc meanc baseline deghost recon smregpar ireg \
outlier detrend intsplit stats displace summary phadj \
spiral estireg gift baseline2 brain partialk physio \
ireg3d estireg3d smregpar3d displace3d par_util morphology \
fiat_scripts $(ARCH_SRCDIRS)
SRCDIRS = $(FIAT_SRCDIRS) scripthelp mripipes csh
HFILES =
CSOURCE =
FIAT_MAKEFILES = Makefile Makefile_common Makefile.ALPHA Makefile.CRAY \
Makefile.HPPA Makefile.HPPA20 Makefile.SGI5 Makefile.SGI64 \
Makefile.SUN4SOL2 Makefile.T3D Makefile.T3E src/Makefile_pkg \
Makefile.SGIMP64 Makefile.LINUX Makefile.SGI6 Makefile.DARWIN \
Makefile.LINUXI386 Makefile.LINUXX86_64 Makefile.CYGWIN \
config.mk.sample
ALL_MAKEFILES = $(FIAT_MAKEFILES) splus/Makefile_splus
DOCFILES = docs/fiasco_executables.html docs/fiasco_install.html \
docs/fiasco_instruct.html \
docs/fiasco_parallel.html docs/mri_pgh.html \
README README.COPYRIGHT README.CITATIONS
DATADIRS = epidata spiraldata tsdata atlases
SCRIPTFILES =
FIAT_MISCFILES = bin/placeholder include/placeholder lib/placeholder \
obj/placeholder docs/generated/placeholder configure
MISCFILES = $(FIAT_MISCFILES) splus/formula \
splus/dlo/placeholder splus/S/placeholder
include Makefile.$(ARCH)
include config.mk
# Thanks to stack overflow user Eldar Abusalimov
# see https://stackoverflow.com/questions/10858261/abort-makefile-if-variable-not-set
# Check that given variables are set and all have non-empty values,
# die with an error otherwise.
#
# Params:
# 1. Variable name(s) to test.
# 2. (optional) Error message to print.
check_defined = \
$(strip $(foreach 1,$1, \
$(call __check_defined,$1,$(strip $(value 2)))))
__check_defined = \
$(if $(value $1),, \
$(error Undefined $1$(if $2, ($2))))
MKALL_DIRS = $(PREREQ_SRCDIRS:%=mkall-%) $(SRCDIRS:%=mkall-%)
MKINSTALL_DIRS = $(PREREQ_SRCDIRS:%=mkinstall-%) $(SRCDIRS:%=mkinstall-%)
MKRELEASEPREP_DIRS = $(PREREQ_SRCDIRS:%=mkreleaseprep-%) $(SRCDIRS:%=mkreleaseprep-%)
MKFIATTARFILE_DIRS = $(PREREQ_SRCDIRS:%=mkfiattarfile-%) $(SRCDIRS:%=mkfiattarfile-%)
MKTARFILE_DIRS = $(PREREQ_SRCDIRS:%=mktarfile-%) $(SRCDIRS:%=mktarfile-%)
MKDEPEND_DIRS = $(PREREQ_SRCDIRS:%=mkdepend-%) $(SRCDIRS:%=mkdepend-%)
MKCLEAN_DIRS = $(PREREQ_SRCDIRS:%=mkclean-%) $(SRCDIRS:%=mkclean-%)
MKPREP_DIRS = $(PREREQ_SRCDIRS:%=mkprep-%) $(SRCDIRS:%=mkprep-%)
MKALL_SPLUSDIRS = $(SPLUSDIRS:%=mkall-%)
MKINSTALL_SPLUSDIRS = $(SPLUSDIRS:%=mkinstall-%)
MKRELEASEPREP_SPLUSDIRS = $(SPLUSDIRS:%=mkreleaseprep-%)
MKTARFILE_SPLUSDIRS = $(SPLUSDIRS:%=mktarfile-%)
MKDEPEND_SPLUSDIRS = $(SPLUSDIRS:%=mkdepend-%)
MKCLEAN_SPLUSDIRS = $(SPLUSDIRS:%=mkclean-%)
MKPREP_SPLUSDIRS = $(SPLUSDIRS:%=mkprep-%)
.PHONY: make-all $(MKALL_DIRS) make-clean $(MKCLEAN_DIRS) make-install $(MKINSTALL_DIRS) \
make-releaseprep $(MKRELEASE_DIRS) make-fiattarfile $(MKFIATTARFILE_DIRS) \
make-fiattarfile-create make-tarfile $(MKTARFILE_DIRS) make-tarfile-create \
make-depend $(MKDEPEND_DIRS) make-clean-splus $(MKCLEAN_SPLUSDIRS) \
make-all-splus $(MKALL_SPLUSDIRS) make-install-splus $(MKINSTALL_SPLUSDIRS) \
make-releaseprep-splus $(MKRELEASEPREP_SPLUSDIRS) \
make-tarfile-splus $(MKTARFILE_SPLUSDIRS) make-depend-splus $(MKDEPEND_SPLUSDIRS) \
make-prep $(MKPREP_DIRS) $(MKPREP_SPLUSDIRS)
all: depend make-all make-all-splus
install: make-install make-install-splus
@:$(call check_defined, PREFIX)
mkdir -p $(PREFIX)/docs
cp docs/*.html $(PREFIX)/docs
releaseprep: make-releaseprep make-releaseprep-splus
chmod +x configure
fiattarfile: $(HFILES) $(CSOURCE) $(FIAT_MAKEFILES) $(DOCFILES) $(DATADIRS) \
$(SCRIPTFILES) $(MISCFILES) make-fiattarfile-create make-fiattarfile
tarfile: $(HFILES) $(CSOURCE) $(ALL_MAKEFILES) $(DOCFILES) $(DATADIRS) \
$(SCRIPTFILES) $(MISCFILES) make-tarfile-create make-tarfile make-tarfile-splus
depend: prep make-depend make-depend-splus
prep: make-prep make-prep-splus
clean: make-clean make-clean-splus
rm -rf include/$(ARCH)
make-all: $(MKALL_DIRS)
make-all-splus: $(MKALL_SPLUSDIRS)
$(MKALL_DIRS):
@($(MAKE) $(DEFINES) -C src/$(@:mkall-%=%) REL_DIR=src/$(@:mkall-%=%) DEP_NM=$(ARCH) all)
$(MKALL_SPLUSDIRS):
@($(MAKE) $(DEFINES) -C splus/$(@:mkall-%=%) REL_DIR=splus/$(@:mkall-%=%) DEP_NM=$(ARCH) all)
# Impose some order on the make process
mkall-fmri: mkall-libdcdf
mkall-libdcdf: mkall-libmri
mkall-libmri: mkall-libcrg
mkall-libcrg: mkall-util
$(SRCDIRS:%=mkall-%) : $(PREREQ_SRCDIRS:%=mkall-%)
mkdepend-fmri: mkdepend-libdcdf
mkdepend-libdcdf: mkdepend-libmri
mkdepend-libmri: mkdepend-libcrg
mkdepend-libcrg: mkdepend-util
$(SRCDIRS:%=mkdepend-%) : $(PREREQ_SRCDIRS:%=mkdepend-%)
make-install: $(MKINSTALL_DIRS)
make-install-splus: $(MKINSTALL_SPLUSDIRS)
$(MKINSTALL_DIRS):
$(MAKE) $(DEFINES) -C src/$(@:mkinstall-%=%) REL_DIR=src/$(@:mkinstall-%=%) install
$(MKINSTALL_SPLUSDIRS):
$(MAKE) $(DEFINES) -C splus/$(@:mkinstall-%=%) REL_DIR=splus/$(@:mkinstall-%=%) install
make-releaseprep: $(MKRELEASEPREP_DIRS)
make-releaseprep-splus: $(MKRELEASEPREP_SPLUSDIRS)
$(MKRELEASEPREP_DIRS):
@($(MAKE) $(DEFINES) -C src/$(@:mkreleaseprep-%=%) REL_DIR=src/$(@:mkreleaseprep-%=%) releaseprep)
$(MKRELEASEPREP_SPLUSDIRS):
@($(MAKE) $(DEFINES) -C splus/$(@:mkreleaseprep-%=%) REL_DIR=splus/$(@:mkreleaseprep-%=%) releaseprep)
make-fiattarfile-create:
tar cvf /tmp/fiat.tar $(HFILES) $(CSOURCE) \
$(FIAT_MAKEFILES) $(DOCFILES) $(SCRIPTFILES) \
$(MISCFILES)
make-fiattarfile: $(MKFIATTARFILE_DIRS)
$(MKFIATTARFILE_DIRS):
@($(MAKE) $(DEFINES) -C src/$(@:mkfiattarfile-%=%) REL_DIR=src/$(@:mkfiattarfile-%=%) fiattarfile)
make-tarfile-create:
tar cvf /tmp/fiasco.tar $(HFILES) $(CSOURCE) \
$(ALL_MAKEFILES) $(DOCFILES) $(SCRIPTFILES) $(DATADIRS) \
$(MISCFILES)
make-tarfile: $(MKTARFILE_DIRS)
make-tarfile-splus: $(MKTARFILE_SPLUSDIRS)
$(MKTARFILE_DIRS):
@($(MAKE) $(DEFINES) -C src/$(@:mktarfile-%=%) REL_DIR=src/$(@:mktarfile-%=%) tarfile)
$(MKTARFILE_SPLUSDIRS):
@($(MAKE) $(DEFINES) -C splus/$(@:mktarfile-%=%) REL_DIR=splus/$(@:mktarfile-%=%) tarfile)
make-depend: $(MKDEPEND_DIRS)
make-depend-splus: $(MKDEPEND_SPLUSDIRS)
$(MKDEPEND_DIRS):
@($(MAKE) $(DEFINES) -C src/$(@:mkdepend-%=%) REL_DIR=src/$(@:mkdepend-%=%) depend)
$(MKDEPEND_SPLUSDIRS):
@($(MAKE) $(DEFINES) -C splus/$(@:mkdepend-%=%) REL_DIR=splus/$(@:mkdepend-%=%) depend)
make-prep: $(MKPREP_DIRS)
make-prep-splus: $(MKPREP_SPLUSDIRS)
$(MKPREP_DIRS):
@($(MAKE) $(DEFINES) -C src/$(@:mkprep-%=%) REL_DIR=src/$(@:mkprep-%=%) prep)
$(MKPREP_SPLUSDIRS):
@($(MAKE) $(DEFINES) -C splus/$(@:mkprep-%=%) REL_DIR=splus/$(@:mkprep-%=%) prep)
make-clean: $(MKCLEAN_DIRS)
make-clean-splus: $(MKCLEAN_SPLUSDIRS)
$(MKCLEAN_DIRS):
@($(MAKE) $(DEFINES) -C src/$(@:mkclean-%=%) REL_DIR=src/$(@:mkclean-%=%) clean)
$(MKCLEAN_SPLUSDIRS):
@($(MAKE) $(DEFINES) -C splus/$(@:mkclean-%=%) REL_DIR=splus/$(@:mkclean-%=%) clean)