From cb6c7ce7221b9c13efc41171b5cb5ca8682450b4 Mon Sep 17 00:00:00 2001 From: junioreif Date: Tue, 6 Aug 2024 09:33:41 -0500 Subject: [PATCH] change tags for the update 1.0.9 --- OpenMiChroM/ChromDynamics.py | 5 ++++- OpenMiChroM/CndbTools.py | 2 +- OpenMiChroM/Integrators.py | 2 +- OpenMiChroM/Optimization.py | 2 +- OpenMiChroM/__init__.py | 2 +- setup.py | 2 +- 6 files changed, 9 insertions(+), 6 deletions(-) diff --git a/OpenMiChroM/ChromDynamics.py b/OpenMiChroM/ChromDynamics.py index 8ca0fca..1978705 100644 --- a/OpenMiChroM/ChromDynamics.py +++ b/OpenMiChroM/ChromDynamics.py @@ -2276,7 +2276,7 @@ def printForces(self): def printHeader(self): print('{:^96s}'.format("***************************************************************************************")) - print('{:^96s}'.format("**** **** *** *** *** *** *** *** OpenMiChroM-1.0.8 *** *** *** *** *** *** **** ****")) + print('{:^96s}'.format("**** **** *** *** *** *** *** *** OpenMiChroM-1.0.9 *** *** *** *** *** *** **** ****")) print('') print('{:^96s}'.format("OpenMiChroM is a Python library for performing chromatin dynamics simulations.")) print('{:^96s}'.format("OpenMiChroM uses the OpenMM Python API,")) @@ -2294,6 +2294,9 @@ def printHeader(self): print('{:^96s}'.format("Oliveira Junior, A. B. et al.")) print('{:^96s}'.format("Chromosome Modeling on Downsampled Hi-C Maps Enhances the Compartmentalization Signal.")) print('{:^96s}'.format("J. Phys. Chem. B, doi:10.1021/acs.jpcb.1c04174.")) + print('{:^96s}'.format("We also thank the polychrom ")) + print('{:^96s}'.format("where part of this code was inspired.")) + print('{:^96s}'.format("10.5281/zenodo.3579472.")) print('') print('{:^96s}'.format("Copyright (c) 2024, The OpenMiChroM development team at")) print('{:^96s}'.format("Rice University")) diff --git a/OpenMiChroM/CndbTools.py b/OpenMiChroM/CndbTools.py index fb06de7..75f07f5 100644 --- a/OpenMiChroM/CndbTools.py +++ b/OpenMiChroM/CndbTools.py @@ -1,4 +1,4 @@ -# Copyright (c) 2020-2023 The Center for Theoretical Biological Physics (CTBP) - Rice University +# Copyright (c) 2020-2024 The Center for Theoretical Biological Physics (CTBP) - Rice University # This file is from the Open-MiChroM project, released under the MIT License. R""" diff --git a/OpenMiChroM/Integrators.py b/OpenMiChroM/Integrators.py index c8811c8..0d1ea94 100644 --- a/OpenMiChroM/Integrators.py +++ b/OpenMiChroM/Integrators.py @@ -1,4 +1,4 @@ -# Copyright (c) 2020-2023 The Center for Theoretical Biological Physics (CTBP) - Rice University +# Copyright (c) 2020-2024 The Center for Theoretical Biological Physics (CTBP) - Rice University # This file is from the Open-MiChroM project, released under the MIT License. R""" diff --git a/OpenMiChroM/Optimization.py b/OpenMiChroM/Optimization.py index ba33fb8..5831f85 100644 --- a/OpenMiChroM/Optimization.py +++ b/OpenMiChroM/Optimization.py @@ -1,4 +1,4 @@ -# Copyright (c) 2020-2023 The Center for Theoretical Biological Physics (CTBP) - Rice University +# Copyright (c) 2020-2024 The Center for Theoretical Biological Physics (CTBP) - Rice University # This file is from the Open-MiChroM project, released under the MIT License. R""" diff --git a/OpenMiChroM/__init__.py b/OpenMiChroM/__init__.py index 166130d..b031571 100644 --- a/OpenMiChroM/__init__.py +++ b/OpenMiChroM/__init__.py @@ -1,4 +1,4 @@ -__version__ = '1.0.8' +__version__ = '1.0.9' from .ChromDynamics import MiChroM from .Optimization import FullTraining, CustomMiChroMTraining diff --git a/setup.py b/setup.py index c696992..98a0250 100644 --- a/setup.py +++ b/setup.py @@ -5,7 +5,7 @@ with open(path.join(this_dir, "README.rst")) as f: long_description = f.read() -__version__ = "1.0.8" +__version__ = "1.0.9" for line in open(path.join("OpenMiChroM", "__init__.py")): if line.startswith("__version__"): exec(line.strip())