3_observations.yml

target_default: 3_observations

packages:
  - sf
  - yaml
  - nhdplusTools
  - dplyr
  - scipiper

sources:
  - 3_observations/src/crosswalk_functions.R
  - 3_observations/src/combine_obs.R

targets:
  3_observations:
    depends:
      - 3_observations/out/nwis_nhdhr_flowline_crosswalk.rds.ind
      - 3_observations/out/obs_subset.rds.ind

  3_observations/out/nwis_nhdhr_flowline_crosswalk.rds.ind:
    command: nwis_to_nhdhr_flowline(
      ind_file = target_name,
      nwis_uv_sites_file = '3_observations/in/nwis_uv_inventory.feather',
      nwis_dv_sites_file = '3_observations/in/nwis_dv_inventory.feather')
  3_observations/out/nwis_nhdhr_flowline_crosswalk.rds:
    command: gd_get('3_observations/out/nwis_nhdhr_flowline_crosswalk.rds.ind')

  3_observations/out/obs_subset.rds.ind:
    command: subset_obs(
      ind_file = target_name,
      site_ids = '2_1_model_fabric/out/site_ids.rds',
      obs = '3_observations/in/daily_temperatures.rds')
  3_observations/out/obs_subset.rds:
    command: gd_get('3_observations/out/obs_subset.rds.ind')

  3_observations/out/obs_temp_flow.rds.ind:
    command: combine_obs(
      ind_file = target_name,
      temp_obs_file = '3_observations/in/obs_temp_full.rds',
      flow_obs_file = '3_observations/in/obs_flow_full.rds')