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NEWS
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20170622
* The command line can now contain \257 (Macron) or UTF characters
containing \257.
* Vote for GNU Parallel's community ads on
http://meta.unix.stackexchange.com/a/4356/2972
http://meta.askubuntu.com/a/16750/22307
http://meta.serverfault.com/a/9040/45704
* Graph for overhead for 1000 jobs has been updated. It remains
steadily at 3.5 ms per job on a 1.7 GHz machine
https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf
* GNU Parallel was cited in: The topology of the directed clique
complex as a network invariant
https://springerplus.springeropen.com/articles/10.1186/s40064-016-2022-y
* GNU Parallel was cited in: Improving Optical Character Recognition
of Finnish Historical Newspapers with a Combination of Fraktur &
Antiqua Models and Image
http://www.ep.liu.se/ecp/131/038/ecp17131038.pdf
* GNU Parallel was cited in: Parallel Execution of Structural Mechanic
Tasks with Use of Small Supercomputers
http://www.sciencedirect.com/science/article/pii/S1877705817324815
* GNU Parallel was cited in: Integration of a Multilingual Preordering
Component into a Commercial SMT Platform
https://www.degruyter.com/downloadpdf/j/pralin.2017.108.issue-1/pralin-2017-0009/pralin-2017-0009.pdf
* Tips For Running Jobs On Your VM
https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel
* Speed up ML model development with GNU Parallel
https://pzelasko.github.io/posts/speed-up-ml-model-development-with-gnu-parallel
* Parallelizing a Python Function for the Extremely Lazy
http://tdhopper.com/blog/2017/Jun/07/parallelizing-a-python-function-for-the-extremely-lazy/
* 使用GNU parallel
http://www.android5.online/Android/androidjc/androidkf/gykf/201603/8741.html
* Bug fixes and man page updates.
20170522
* --timeout can now use s=second,m=minute,h=hour,d=day.
* --dr is now an alias for --dry-run.
* Vote for GNU Parallel's community ads on
http://meta.unix.stackexchange.com/a/4356/2972
http://meta.askubuntu.com/a/16750/22307
http://meta.serverfault.com/a/9040/45704
* GNU Parallel was cited in: Feature Detection in Visual Cortex during
Different Functional States
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5397493/
* GNU Parallel was cited in: From genotype to phenotype: inferring
relationships between microbial traits and genomic components
https://docserv.uni-duesseldorf.de/servlets/DerivateServlet/Derivate-44622/main.pdf
* GNU Parallel was cited in: Designing fecal microbiota transplant
trials that account for differences in donor stool efficacy
http://biorxiv.org/content/biorxiv/early/2016/07/25/065383.full.pdf
* GNU Parallel was cited in: Assessing the predictability of
anharmonic vibrational modes at the example of hydroxyl groups - ad
hoc construction of localised modes and the influence of structural
solute–solvent motifs
http://pubs.rsc.org/-/content/articlelanding/2017/cp/c7cp01662j#!divAbstract
* GNU Parallel was cited in: Mapping Environmental Influences on
Utility Fire Threat
ftp://frapftp.fire.ca.gov/outgoing/transfer/PUC_Map1/Utility%20Fire%20map%201%20final%20review%20and%20development%20report21616.pdf
* GNU Parallel was cited in: Weak vs. Strong Disorder Superfluid-Bose
Glass Transition in One Dimension
https://arxiv.org/pdf/1704.02257.pdf
* GNU Parallel was cited in: Online Automatic Post-editing for MT in a
Multi-Domain Translation Environment
https://www.aclweb.org/anthology/E/E17/E17-1050.pdf
* GNU Parallel was cited in: Cross-calibration of S-NPP VIIRS
moderate-resolution reflective solar bands against MODIS Aqua over
dark water scenes
http://www.atmos-meas-tech.net/10/1425/2017/amt-10-1425-2017.pdf
* GNU Parallel was cited in: Scattering Networks: Efficient 2D
Implementation And Application To Melanoma Classification
http://amslaurea.unibo.it/12261/1/nurrito_eugenio_tesi_fisica_magistrale.pdf
* GNU Parallel was cited in: Genome-scale detection of positive
selection in 9 primates predicts human-virus evolutionary conflicts
http://biorxiv.org/content/biorxiv/early/2017/04/27/131680.full.pdf
* GNU Parallel is used in: Creates a speech dataset for deep learning
https://github.com/jupiter126/Create_Speech_Dataset
* GNU Parallel is used in: Parse and process the demixing secrets
dataset (DSD100) https://github.com/faroit/dsdtools
* First glance at the gnu parallel utility
https://ibiscybernetics.com/blog/2017-04-05.html
* Installing parallel from source
https://bitsanddragons.wordpress.com/2017/05/03/installing-parallel-from-source/
* How to run command or code in parallel in bash shell under Linux or
Unix
https://www.cyberciti.biz/faq/how-to-run-command-or-code-in-parallel-in-bash-shell-under-linux-or-unix/
* Parallel Serial Jobs Using GNU Parallel
http://www.hpc.lsu.edu/training/weekly-materials/2017-Spring/gnuparallel-Feb2017.pdf
* GNU Parallel or How to list millions of S3 objects
https://joeray.me/gnu-parallel-how-to-list-millions-objects.html
* Which Is the Best Tool for Copying a Large Directory Tree Locally?
http://arjon.es/2017/05/11/which-is-the-best-tool-for-copying-a-large-directory-tree-locally/
* Bug fixes and man page updates.
20170422
* --halt supports done in addition to success and fail.
* parset will set variables in parallel in Bash.
* Perl 5.6 on Irix is no longer supported.
* Vote for GNU Parallel's community ads on
http://meta.unix.stackexchange.com/a/4356/2972
http://meta.askubuntu.com/a/16750/22307
http://meta.serverfault.com/a/9040/45704
* GNU Parallel was cited in: Halvade-RNA: Parallel variant calling
from transcriptomic data using MapReduce
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0174575
* GNU Parallel was cited in: StrAuto: automation and parallelization
of STRUCTURE analysis
http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1593-0
* GNU Parallel was cited in: Trespassing the Boundaries: Labeling
Temporal Bounds for Object Interactions in Egocentric Video
https://128.84.21.199/pdf/1703.09026.pdf
* GNU Parallel is used in: https://github.com/lucascbeyeler/zmbackup
* Using GNU Parallel
https://wiki.ncsa.illinois.edu/display/ROGER/Using+GNU+Parallel
* Find and xargs and parallel
http://helpful.knobs-dials.com/index.php/Find_and_xargs_and_parallel#Parallel
* Quick Introduction to GNU Parallel
https://github.com/mlangill/microbiome_helper/wiki/Quick-Introduction-to-GNU-Parallel
* Data science at the command line https://www.slideshare.net/sharatsc/data-science-at-the-command-line
* Bedtools笔记 http://www.jianshu.com/p/67b0665490ac
* Bug fixes and man page updates.
20170322
* --rpl can now take arguments by adding '(regexp)' in the replacement
string.
* Vote for GNU Parallel's community ads on
http://meta.unix.stackexchange.com/a/4356/2972
http://meta.askubuntu.com/a/16750/22307
http://meta.serverfault.com/a/9040/45704
* GNU Parallel was cited in: shmlast: An improved implementation of
Conditional Reciprocal Best Hits with LAST and Python
https://joss.theoj.org/papers/3cde54de7dfbcada7c0fc04f569b36c7
* GNU Parallel was cited in: Prediction of relativistic electron flux
in the Earth’s outer radiation belt at geostationary orbit by
adaptive methods
https://link.springer.com/article/10.1134/S0016793217010108
* GNU Parallel was cited in: Higher likelihood of multiple bit-flips
due to neutron-induced strikes on logic gates
https://arxiv.org/pdf/1612.08239.pdf
* GNU Parallel was cited in: A Monte Carlo Resampling Approach for the
Calculation of Hybrid Classical and Quantum Free Energies
http://pubs.acs.org/doi/pdfplus/10.1021/acs.jctc.6b00506
* GNU Parallel was cited in: Learning string distance with smoothing
for OCR spelling correction
https://link.springer.com/article/10.1007/s11042-016-4185-5
* GNU Parallel was cited in: The Breakdown of String Perturbation
Theory for Many External Particles
https://arxiv.org/pdf/1611.08003.pdf
* GNU Parallel was cited in: Operations Research Applications in
Nuclear Energy
https://dspace.library.colostate.edu/bitstream/handle/11124/170687/Johnson_mines_0052E_11207.pdf?sequence=1&isAllowed=y
* GNU Parallel was cited in: Parallel Computing: GNU Parallel
http://www.blopig.com/blog/2017/02/parallel-computing-gnu-parallel/
* Stig Sandbeck Mathisen: Change All The Passwords (Again)
http://garf.us/2017/02/stig-sandbeck-mathisen-change-all-the-passwords-again/
* Trabalhando como Paralelismo no Bash usando o GNU Parallel
http://www.beyeler.com.br/2017/03/trabalhando-como-paralelismo-no-bash-usando-o-gnu-parallel/
* GNU parallel と SQL*Loader 組み合わせ実行例
https://blogs.oracle.com/LetTheSunShineIn/entry/gnu_parallel_%E3%81%A8_sql_loader
* Bug fixes and man page updates.
20170222
* env_parallel now supports /bin/sh, ash, dash.
* --tee will pipe all data to all jobs. Used with --pipe/--pipepart
and :::. Small example: seq 3333 | parallel --pipe --tee --tag 'grep
{} | wc -l' ::: {0..9}
* If --results {replstr} ends in /: save in dir. Otherwise save as
file. Example: parallel --results {} echo {} ::: a b c
* Vote for GNU Parallel's community ads on
http://meta.unix.stackexchange.com/a/4356/2972
http://meta.askubuntu.com/a/16750/22307
http://meta.serverfault.com/a/9040/45704
* GNU Parallel was cited in: Low-delay forwarding with multiple
candidates for VANETs using multi-criteria decision making
http://ieeexplore.ieee.org/document/7835961/
* GNU Parallel was cited in: An Integrated Simulator and Dataset that
Combines Grasping and Vision for Deep Learning
https://arxiv.org/pdf/1702.02103.pdf
* GNU Parallel was cited in: A Bayesian model selection approach for
identifying differentially expressed transcripts from RNA sequencing
data http://onlinelibrary.wiley.com/doi/10.1111/rssc.12213/full
* GNU Parallel was cited in: The impact of copy number variation on
gout, and the apple genome
https://ourarchive.otago.ac.nz/bitstream/handle/10523/7060/BoocockJames2016MSc.pdf?sequence=3
* GNU Parallel was cited in: Reaction rates for reaction-diffusion
kinetics on unstructured meshes
http://aip.scitation.org/doi/10.1063/1.4975167
* GNU Parallel was cited in: Modeling prediction error improves power
of transcriptome-wide association studies
http://biorxiv.org/content/biorxiv/early/2017/02/14/108316.full.pdf
* GNU Parallel was cited in: Proper experimental design requires
randomization/balancing of molecular ecology experiments
http://biorxiv.org/content/biorxiv/early/2017/02/17/109280.full.pdf
* GNU Parallel was cited in: Experiment-based thermal micromagnetic
simulations of the magnetization reversal for ns-range clocked
nanomagnetic logic
http://aip.scitation.org/doi/full/10.1063/1.4974021
* GNU Parallel was cited in: The University of Edinburgh’s systems
submission to the MT task at IWSLT
http://workshop2016.iwslt.org/downloads/IWSLT_2016_paper_27.pdf
* Fast-GBS uses GNU Parallel: https://bitbucket.org/jerlar73/fast-gbs
* Job: DevOps Engineer/Senior Systems Administrator in New York, New
York
http://rockefeller.jobs/new-york-ny/devops-engineersenior-systems-administrator/2DB3408EAC9E4617AD238550F31C7641/job/
* Training in GNU Parallel:
https://www.carc.unm.edu/education-outreach/workshops--training/
* Training in GNU Parallel:
http://www.hpc.lsu.edu/training/registration.php?topic=Parallel%20Serial%20Jobs%20Using%20GNU%20Parallel&date=February%2022,%202017&time=9:00%20AM%20-%2011:00%20AM&place=307%20Frey&deadline=2017-02-21%2016:30:00
* Batch Convert Images from PNG to JPEG
http://coreygoldberg.blogspot.dk/2017/02/batch-convert-images-from-png-to-jpeg.html
* Accelerating Oxford Nanopore Basecalling
http://fowlerlab.org/2017/01/26/accelerating-oxford-nanopore-basecalling/
* parallel и imagemagick в loop на bash
https://www.linux.org.ru/forum/development/13190247
* Bug fixes and man page updates.
20170206alpha
* --tee introduced.
20170122
* sql now uses a temporary credentials file for MySQL to avoid
warning.
* --sqlmaster and --sqlworker have been reworked.
* --sqlworker only reads from the DBURL: any command and any arguments
are ignored.
* --sqlmaster +DBURL will append different commands to the DBURL and
not erase the table.
* If --results contain a replacement string, no tree structure with
args will be generated.
* --fg --tmux or --fg --tmuxpane will connect to the tmux.
* GNU Parallel was cited in: Fast, Automated Indoor Light Detection,
Classification, and Measurement
https://www2.eecs.berkeley.edu/Pubs/TechRpts/2016/EECS-2016-212.pdf
* GNU Parallel was cited in: Unbiased RNA Shotgun Metagenomics in
Social and Solitary Wild Bees Detects Associations with Eukaryote
Parasites and New Viruses
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0168456
* GNU Parallel was cited in: Almost Event-Rate Independent Monitoring
of Metric Temporal Logic
http://people.inf.ethz.ch/trayteld/papers/tacas17-aerial/aerial.pdf
* 使用GNU parallel命令并行预处理数据: https://blog.razrlele.com/p/1843
* GNU Parallel as a queuing system:
http://puntoblogspot.blogspot.com/2017/01/gnu-parallel-as-queuing-system.html
* AWS re:Invent 2016: Deep Dive on Amazon Elastic File System (STG202)
slide 45
http://www.slideshare.net/AmazonWebServices/aws-reinvent-2016-deep-dive-on-amazon-elastic-file-system-stg202
and https://youtu.be/PlTuJx4VnGw?t=30m16s
* Bug fixes and man page updates.
20161222
* --results foo.csv will save output as a CSV-file. Can be directly
imported into R or LibreCalc.
* When using --pipepart a negative --block-size is not interpreted as
a block size but as the number of blocks each jobslot should have.
* --sqlmaster/--sqlandworker will append jobs to the DBURL if the
DBURL is prepended with +.
* GNU Parallel was cited in: A cloud-based workflow to quantify
transcript-expression levels in public cancer compendia
http://www.nature.com/articles/srep39259
* GNU Parallel was cited in: Determination of crystal structures of
proteins of unknown identity using a marathon molecular replacement
procedure: Structure of Stenotrophomonas maltophilia
phosphate-binding protein
https://www.researchgate.net/publication/308186413_Determination_of_crystal_structures_of_proteins_of_unknown_identity_using_a_marathon_molecular_replacement_procedure_Structure_of_Stenotrophomonas_maltophilia_phosphate-binding_protein
* GNU Parallel was cited in: Large-scale benchmarking reveals false
discoveries and count transformation sensitivity in 16S rRNA gene
amplicon data analysis methods used in microbiome studies
http://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-016-0208-8
* GNU Parallel was cited in: Decomposing Images into Layers via
RGB-space Geometry
https://cs.gmu.edu/~ygingold/singleimage/Decomposing%20Images%20into%20Layers%20via%20RGB-space%20Geometry%20(Tan%20et%20al%202016%20TOG)%20small.pdf
* Transient compute clustering with GNU Parallel and sshfs
https://gist.github.com/Brainiarc7/24c966c8a001061ee86cc4bc05826bf4
* 4 Ways to Batch Convert Your PNG to JPG and Vice-Versa
http://www.tecmint.com/linux-image-conversion-tools/
* All's Fair in Love and Distributed Storage
http://cohesity.com/blog/alls-fair-love-distributed-storage/
* How can I use GNU Parallel to run a lot of commands in parallel
https://www.msi.umn.edu/support/faq/how-can-i-use-gnu-parallel-run-lot-commands-parallel
* 정해영의 블로그 - JEONG Haeyoung's blog
http://blog.genoglobe.com/2016/11/gnu-parallel.html
* 在Linux下将PNG和JPG批量互转的四种方法
http://os.51cto.com/art/201612/524182.htm
* Running in parallel http://tomkimpson.com/howto/gnuparallel/
* Taco Bell Parallel Programming
https://giorgos.sealabs.net/taco-bell-parallel-programming.html
* Bug fixes and man page updates.
20161122
* --record-env can now be used with env_parallel for bash, ksh, pdksh,
and zsh.
* GNU Parallel was cited in: An improved implementation of Conditional
Reciprocal Best Hits with LAST and Python
https://pypi.python.org/pypi/shmlast/1.0.3
* GNU Parallel was cited in: miRPathDB: a new dictionary on microRNAs
and target pathways
http://nar.oxfordjournals.org/content/early/2016/10/13/nar.gkw926.full
* GNU/Parallel – Run multiple commands simultaneously
https://vinusumi.wordpress.com/2016/11/08/gnuparallel-run-multiple-commands-simultaneously/
* Tutorial: Parallel web scraping with CasperJS and GNU Parallel
http://g-liu.com/blog/2016/10/tutorial-parallel-web-scraping-with-casperjs-and-gnu-parallel/
* Bug fixes and man page updates.
20161022
* First command no longer gets stdin as it causes unpredictable issues.
* GNU Parallel was cited in: Efficiently parallelized modeling of
tightly focused, large bandwidth laser pulses
https://arxiv.org/pdf/1609.08146v1.pdf
* How to crunch lots of geodata in parallel
http://blog.faraday.io/how-to-crunch-lots-of-geodata-in-parallel/
* GNU parallel is my new toaster
http://amedee.me/gnu-parallel-is-my-new-toaster/index.html
* Bug fixes and man page updates.
20160922
* parcat - cat files or fifos in parallel
* GNU Parallel was cited in: Velocity: A Netflow Based Optimized
Geo-IP Lookup Tool
https://mospace.umsystem.edu/xmlui/bitstream/handle/10355/50842/Thesis_2016_Pakhare.pdf?sequence=1&isAllowed=y
* GNU Parallel was cited in: Viral deep sequencing needs an adaptive
approach: IRMA, the iterative refinement meta-assembler
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5011931/
* Using GNU Parallel and ImageMagick for Conversions
https://blog.fractalcomic.com/tutorials/using-gnu-parallel-and-imagemagick-for-conversions/
* Training in GNU Parallel
http://www.cism.ucl.ac.be/Services/Formations/parcomp.pdf
* Chown Ceph OSD data directory using GNU Parallel
http://blog.widodh.nl/2016/08/chown-ceph-osd-data-directory-using-gnu-parallel/
* FastGBS uses GNU Parallel https://bitbucket.org/jerlar73/fastgbs
* dDocent: A guide to ddRAD sequencing
https://ddocent.wordpress.com/ddocent-pipeline-user-guide/
* SOFTWARE GNU Parallel
http://msi-riss.readthedocs.io/en/latest/software/gnu-parallel.html
* Bug fixes and man page updates.
20160822
* --tmuxpane opens jobs in panes in tmux. Useful if you want to
monitor progress of less than 100 simultaneous jobs.
* --linebuffer now treats \r as line ending, too.
* Perl changes forces use of floats to be given with leading zero, so
0.1 and not .1
* --xapply renamed to --link.
* Support for pdksh will fade until someone packages it for Ubuntu 16.
* GNU Parallel was cited in: Exome sequencing of geographically
diverse barley landraces and wild relatives gives insights into
environmental adaptation
http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3612.html?WT.feed_name=subjects_genetics#references
* GNU Parallel was cited in: Vision-Enhanced Lidar Odometry and
Mapping https://www.ri.cmu.edu/pub_files/2016/8/DLL-thesis.pdf
* Easy parallelization with GNU parallel
http://mpharrigan.com/2016/08/02/parallel.html
* Facebook V: Predicting Check Ins, Winner's Interview: 2nd Place,
Markus Kliegl
http://blog.kaggle.com/2016/08/02/facebook-v-predicting-check-ins-winners-interview-2nd-place-markus-kliegl/
* Parallel import
http://www.manitou-mail.org/blog/2016/07/parallel-import/
* Large file batch processing using NodeJs and GNU Parallel
http://www.zacorndorff.com/2016/07/27/large-file-batch-processing-using-nodejs-and-gnu-parallel/
* Bug fixes and man page updates.
20160722
* env_parallel is now ready for wider testing. It is still beta
quality.
* env_parallel is heavily modified for all shells and testing has been
increased.
* Selectively choosing what to export using --env now works for
env_parallel (bash, csh, fish, ksh, pdksh, tcsh, zsh).
* --round-robin now gives more work to a job that processes faster
instead of same amount to all jobs.
* --pipepart works on block devices on GNU/Linux.
* GNU Parallel was cited in: HybPiper: Extracting Coding Sequence and
Introns for Phylogenetics from High-Throughput Sequencing Reads
Using Target Enrichment
http://www.bioone.org/doi/full/10.3732/apps.1600016
* GNU Parallel was cited in: StrAuto - Automation and Parallelization
of STRUCTURE Analysis
http://www.crypticlineage.net/download/strauto/strauto_doc.pdf
* GNU Parallel was cited in: Tools and techniques for computational
reproducibility
http://gigascience.biomedcentral.com/articles/10.1186/s13742-016-0135-4
* GNU Parallel was cited in: FlashPCA: fast sparse canonical
correlation analysis of genomic data
http://biorxiv.org/content/biorxiv/suppl/2016/04/06/047217.DC1/047217-1.pdf
* GNU Parallel was cited in: Math Indexer and Searcher under the Hood:
Fine-tuning Query Expansion and Unification Strategies
http://research.nii.ac.jp/ntcir/workshop/OnlineProceedings12/pdf/ntcir/MathIR/05-NTCIR12-MathIR-RuzickaM.pdf
* GNU Parallel was cited in: The Evolution and Fate of
Super-Chandrasekhar Mass White Dwarf Merger Remnants
http://arxiv.org/pdf/1606.02300.pdf
* GNU Parallel was cited in: Evaluation of Coastal Scatterometer
Products
https://mdc.coaps.fsu.edu/scatterometry/meeting/docs/2016/Thu_AM/coastal-poster.pdf
* GNU Parallel was used in: https://github.com/splitice/bulkdnsblcheck
* The iconv slurp misfeature
http://www.openfusion.net/linux/iconv_slurp_misfeature
* แบบว่า CPU เหลือ https://veer66.wordpress.com/2016/06/15/gnu-parallel/
* Bug fixes and man page updates.
20160622
* $PATH can now be exported using --env PATH. Useful if GNU Parallel
is not in your path on remote machines.
* If --block is left out, --pipepart will use a block size that will
result in 10 jobs per jobslot.
* The cookie from 2016-01-04 was won by Morgan Rodgers on the
2016-06-06 after 5 months.
* Vote for GNU Parallel's community ad on
https://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
* GNU Parallel was cited in: Genotypic Resistance Tests Sequences
Reveal the Role of Marginalized Populations in HIV-1 Transmission in
Switzerland http://www.nature.com/articles/srep27580
* GNU Parallel was cited in: A Deep-Learning Approach for Operation of
an Automated Realtime Flare Forecast
https://arxiv.org/pdf/1606.01587.pdf
* Unix parallel: Populating all the USB sticks
http://www.markhneedham.com/blog/2016/06/01/unix-parallel-populating-all-the-usb-sticks/
* GNU Parallel is a fantastic utility https://www.dray.be/parallel/
* Combining a large number of VCF files
https://gtamazian.com/2016/06/16/combining-a-large-number-of-vcf-files/
* Useful Scraping Techniques
http://blog.apps.npr.org/2016/06/17/scraping-tips.html
* Tools of the trade
http://onox.com.br/2015/05/tools-of-the-trade/#more-198
* Armslist scraper https://github.com/nprapps/armslist-scraper/
* Bug fixes and man page updates.
20160522
* niceload --net pauses the program if the internet connection is
overloaded.
* Vote for GNU Parallel's community ad on
https://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
* Updated speed comparison between versions
https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf
* GNU Parallel was cited in: Improving computation efficiency by
parallel programming
http://www.irbis-nbuv.gov.ua/cgi-bin/irbis_nbuv/cgiirbis_64.exe?C21COM=2&I21DBN=UJRN&P21DBN=UJRN&IMAGE_FILE_DOWNLOAD=1&Image_file_name=PDF/ape_2013_3_44.pdf
* GNU Parallel was cited in: A supernova feedback implementation for
the astrophysical simulation software Arepo
https://arxiv.org/abs/1604.06071
* GNU Parallel was cited in: Lorenz-Mie theory for 2D scattering and
resonance calculations https://arxiv.org/pdf/1505.07691v2.pdf
* GNU Parallel was cited in: Host-pathogen co-evolution and the
emergence of broadly neutralizing antibodies in chronic infections
https://arxiv.org/abs/1512.06296
* GNU Parallel was cited in: Pacific People, Metabolic Disease and
Evolutionary Processes: a mitochondrial DNA study
https://otago.ourarchive.ac.nz/handle/10523/6340
* GNU Parallel was cited in: The effect of domain modeling on
efficiency of planning: Lessons from the Nomystery domain
http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=7407131
* GNU Parallel was cited in: Oops, my tests broke the build: An
analysis of Travis CI builds with GitHub
https://peerj.com/preprints/1984/
* GNU Parallel was cited in: Drosophila Muller F Elements Maintain a
Distinct Set of Genomic Properties Over 40 Million Years of
Evolution http://www.g3journal.org/content/5/5/719.full.pdf+html
* GNU Parallel was cited in: An Empirical Comparison of Neural
Architectures for Reinforcement Learning in Partially Observable
Environments
http://biorxiv.org/content/biorxiv/early/2016/03/24/022707.full.pdf
* GNU Parallel was cited in: PleaseTM: Enabling Transaction Conflict
Management in Requester-wins Hardware Transactional Memory
http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7446072
* GNU Parallel was cited in: EASE-MM: Sequence-Based Prediction of
Mutation-Induced Stability Changes with Feature-Based Multiple
Models
http://www.sciencedirect.com/science/article/pii/S0022283616000310
* GNU Parallel was cited in: A new orthology assessment method for
phylogenomic data: Unrooted Phylogenetic Orthology
http://mbe.oxfordjournals.org/content/early/2016/04/06/molbev.msw069.short
https://github.com/ballesterus/UPhO
* GNU Parallel was cited in: Distinctive Interest Point Selection for
Efficient Near-duplicate Image Retrieval
http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7459172
* GNU Parallel was cited in: The Evolution of C Programming Practices:
A Study of the Unix Operating System 1973–2015
https://dl.acm.org/citation.cfm?id=2884799 (It has the cutest
thumbnail graphs I have ever seen scattered all over the text)
* GNU Parallel was cited in: Data processing pipeline for serial
femtosecond crystallography at SACLA
http://journals.iucr.org/j/issues/2016/03/00/zw5001/index.html
* GNU Parallel was cited in: Reconstruction of Fine-Scale Auroral
Dynamics http://arxiv.org/pdf/1512.01460.pdf
* GNU Parallel was cited in: Genomic legacy of the African cheetah,
Acinonyx jubatus
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4676127/pdf/13059_2015_Article_837.pdf
* GNU Parallel was cited in: Don’t Forget to Lock the Back Door! A
Characterization of IPv6 Network Security Policy
http://benign-research-probe2.eecs.umich.edu/ndss16_ipv6_final.pdf
* GNU Parallel was cited in: Comprehensive Annotation of the
Parastagonospora nodorum Reference Genome Using Next-Generation
Genomics, Transcriptomics and Proteogenomics
http://journals.plos.org/plosone/article/asset?id=10.1371%2Fjournal.pone.0147221.PDF
* GNU Parallel was cited in: How attention influences perceptual
decision making: Single-trial EEG correlates of drift-diffusion
model parameters http://www.cidlab.com/prints/nunez2016attention.pdf
* GNU Parallel was cited in: Telomere And Proximal Sequence Analysis
Using High-Throughput Sequencing Reads
http://repository.upenn.edu/edissertations/1460/
* GNU Parallel was cited in: AT-GIS: Highly Parallel Spatial Query
Processing with Associative Transducers
http://lsds.doc.ic.ac.uk/sites/default/files/ATGIS-SIGMOD16.pdf
* GNU Parallel was cited in: PVAIR: Partial Variable Assignment
InterpolatoR http://verify.inf.usi.ch/sites/default/files/main-2.pdf
* GNU Parallel was cited in: Comparative Cladistics: Fossils,
Morphological Data Partitions and Lost Branches in the Fossil Tree
of Life http://opus.bath.ac.uk/43955/
* GNU Parallel was cited in: Shannon: An Information-Optimal de
NovoRNA-Seq Assembler
http://biorxiv.org/content/biorxiv/early/2016/02/09/039230.full.pdf
* GNU Parallel was cited in: Adaptive Measure-Theoretic Parameter
Estimation for Coastal Ocean Modeling
https://repositories.lib.utexas.edu/handle/2152/32435
* GNU Parallel was cited in: Computational Design of DNA-Binding
Proteins
http://link.springer.com/protocol/10.1007/978-1-4939-3569-7_16
* GNU Parallel was cited in: Reference genotype and exome data from an
Australian Aboriginal population for health-based research
http://www.nature.com/articles/sdata201623
* GNU Parallel was cited in: Do aye-ayes echolocate?
http://biorxiv.org/content/biorxiv/early/2016/04/11/048165.full.pdf
* GNU Parallel was cited in: Functional enrichments of disease
variants across thousands of independent loci in eight diseases
http://biorxiv.org/content/biorxiv/early/2016/04/11/048066.full.pdf
* GNU Parallel was cited in: From genomes to phenotypes: Traitar, the
microbial trait analyzer
http://biorxiv.org/content/biorxiv/early/2016/03/12/043315.full.pdf
* GNU Parallel was mentioned in: Fast Playback Framework for Analysis
of Ground-Based Doppler Radar Observations Using MapReduce
Technology
http://journals.ametsoc.org/doi/pdf/10.1175/JTECH-D-15-0118.1
* NCBI blast tutorial
https://github.com/enormandeau/ncbi_blast_tutorial
* Distributed Preservation Made Simple
https://blog.archive.org/2016/02/26/distributed-preservation-made-simple/
* Parallel Jobs in Luigi http://rjbaxley.com/posts/2016/03/13/parallel_jobs_in_luigi.html
* Bug fixes and man page updates.
20160422
* :::+ and ::::+ work like ::: and :::: but links this input source to
the previous input source in a --xapply fashion. Contrary to
--xapply values do not wrap: The shortest input source determines
the length.
* --line-buffer --keep-order now outputs continously from the oldest
job still running. This is more what you would expect than the
earlier behaviour where --keep-order had no effect with
--line-buffer.
* env_parallel supports tcsh, csh, pdksh. In fish it now supports
arrays. In csh/tcsh it now supports variables, aliases, and arrays
with no special chars. In pdksh it supports aliases, functions,
variables, and arrays.
* Function exporting on Mac OS X works around old Bash version.
* Better CPU detection on OpenIndiana.
* GNU Parallel was cited in: Automatic Methods for Assisted
Recruitment
https://www.researchgate.net/publication/297738658_Automatic_Methods_for_Assisted_Recruitment
* GNU Parallel was cited in: Reinterpretation of ATLAS 8 TeV searches
for Natural SUSY with a R-Sneutrino LSP
http://arxiv.org/pdf/1603.06130.pdf
* GNU Parallel was cited in: An Operational Radiometric Landsat
Preprocessing Framework for Large-Area Time Series Applications
https://www.uni-trier.de/fileadmin/fb6/prof/FER/Publikationen/frantz_et_al_ieee-tgrs-2016-post-print.pdf
* A basic demo of how GNU Parallel can speed up execution of commands
https://www.youtube.com/watch?v=kl8LO2jcvMc
* qbatch uses GNU Parallel: https://pypi.python.org/pypi/qbatch/1.0rc2
* FaceCrop uses GNU Parallel: https://github.com/EderSantana/FaceCrop
* Parallel Processing with Catmandu
https://librecatproject.wordpress.com/2016/04/20/parallel-processing-with-catmandu/
* GNU parallel 應用範例
http://staypython.blogspot.dk/2016/04/gnu-parallel.html
* Bug fixes and man page updates.
20160322
* env_parallel is a function that exports the environment (functions,
aliases, variables, and arrays) to GNU Parallel. Run 'man
env_parallel' for details.
* niceload --prg now searches for substrings if no process with the
name is found.
* GNU Parallel was cited in: Random Forest DBSCAN for USPTO Inventor
Name Disambiguation http://arxiv.org/pdf/1602.01792.pdf
* GNU Parallel was mentioned (with wrong citation) in: Dual Level
Parallel Computations for LargeScale High-Fidelity Database to
Design Aerospace Vehicles
http://www.nas.nasa.gov/assets/pdf/papers/Guruswamy_2013_DualLevelParallelComputations.pdf
* Using ‘Parallel’ in Unix
https://shearnrylan.wordpress.com/2016/02/22/using-parallel-in-unix/
* JPEG Squish uses (and co-distributes) GNU Parallel:
http://dantidswell.co.uk/jpeg-squish/
* Bug fixes and man page updates.
20160222
* Vote for new community on Superuser, Ask Ubuntu, Unix&Linux
http://meta.superuser.com/questions/11127/community-promotion-ads-2016/11225#11225
http://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
http://meta.unix.stackexchange.com/questions/3854/community-promotion-ads-2016/3893#3893
* Daily Quick Tip: parallel
https://medium.com/@jacaetevha/daily-quick-tip-parallel-8772435f6582
* Downloading a list of URLs
http://blog.gypsydave5.com/2016/02/04/xargs-and-curl/
* Using GNU Parallel and ImageMagick for Conversions
http://blog.fractalcomic.com/tutorials/using-gnu-parallel-and-imagemagick-for-conversions/
* Running bash commands in parallel
http://linuxcommando.blogspot.dk/2016/01/running-bash-commands-in-parallel.html
* parallel processing in PDAL
https://smathermather.wordpress.com/2016/01/28/parallel-processing-in-pdal/
* A Million Text Files And A Single Laptop
http://randyzwitch.com/gnu-parallel-medium-data/
* 「今日から使い切る」ための GNU Parallelによる並列処理入門
http://www.slideshare.net/koji_matsuda/gnu-parallel
* Bug fixes and man page updates.
20160122
* --sql DBURL uses DBURL as storage for jobs and output. It does not
run any jobs so it requires at least one --sqlworker. DBURL must
point to a table.
* --sqlworker DBURL gets jobs from DBURL and stores the result back to
DBURL.
* --sqlandworker is a shorthand for --sql and --sqlworker.
* --sqlworker requires the output of a single job to fit in memory.
* --results now also saves a file called 'seq' containing the sequence
number.
* If $PARALLEL_ENV is a file, then that file will be read into
$PARALLEL_ENV.
* man parallel_tutorial has been given an overhaul.
* --workdir now accepts replacementstrings.
* GNU Parallel was cited in: Possum - A Framework for
Three-Dimensional Reconstruction of Brain Images from Serial
Sections http://link.springer.com/article/10.1007/s12021-015-9286-1
* GNU Parallel was cited in: A Genetic Algorithm for the selection of
structural MRI features for classification of Mild Cognitive
Impairment and Alzheimer's Disease
http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=7359909&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7359909
* GNU Parallel was cited in: The Effect of Domain Modeling on
Performance of Planning Algorithms
http://isaim2016.cs.virginia.edu/papers/ISAIM2016_Bartak_Vodrazka.pdf
* Plotting time tables for jobs run by GNU Parallel
https://github.com/ziotom78/plot_joblog
* GNU Parallel was used in: Mission Impossible: you have 1 minute to
analyze the Ebola Genome https://www.biostars.org/p/119397
* GNU Parallel is used in LAST: http://last.cbrc.jp/
* Distributed Log Search Using GNU Parallel
http://codehate.com/blog/2015/12/01/distributed-log-search-using-gnu-parallel/
* Bug fixes and man page updates.
20151222
* --transfer is now an alias for --transferfile {}.
* --transferfile works like --transfer, but takes an argument like
--return. This makes it possible to combine transferring files
with multiple input sources: parallel -S server --tf {1} wc {2}
{1} ::: * ::: -l -w -c
* total_jobs() can now be used in {= =}: parallel echo job {#} of '{=
$_=total_jobs() =}' ::: {1..50}
* GNU Parallel was cited in: Evolution and Learning in Heterogeneous
Environments
http://research.gold.ac.uk/15078/1/COM_thesis_JonesD_2015.pdf
* GNU Parallel was cited in: Achieving Consistent Doppler Measurements
from SDO/HMI Vector Field Inversions
http://arxiv.org/pdf/1511.06500.pdf
* Flo uses GNU Parallel: https://github.com/wurmlab/flo
* 使用 GNU parallel 來平行運算
http://mutolisp.logdown.com/posts/316959-using-gnu-parallel-to-parallel-computing
* Bug fixes and man page updates.
20151122
* GNU Parallel packaged for CERN CentOS:
http://linuxsoft.cern.ch/cern/centos/7/cern/x86_64/repoview/parallel.html
* GNU Parallel was cited in: The Outer Solar System Origins Survey:
I. Design and First-Quarter Discoveries
http://arxiv.org/pdf/1511.02895.pdf
* GNU Parallel was cited in: Contrasting genetic architectures of
schizophrenia and other complex diseases using fast
variance-components analysis
http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3431.html
* GNU Parallel was cited in: Named-Entity Chunking for Norwegian Text
using Support Vector Machines
http://ojs.bibsys.no/index.php/NIK/article/viewFile/248/211
* GNU Parallel was cited in: Multiscale Estimation of Binding Kinetics
Using Brownian Dynamics, Molecular Dynamics and Milestoning
http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004381#pcbi.1004381.ref072
* GNU Parallel was cited in: A Detailed Characterization of Errors in
Logic Circuits due to Single-Event Transients
http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=7302348&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7302348
* GNU Parallel was cited in: Arabic Speaker Emotion Classification
Using Rhythm Metrics and Neural Networks
http://www.eurasip.org/Proceedings/Eusipco/Eusipco2015/papers/1570104855.pdf
* GNU Parallel was cited in: Stride Search: a general algorithm for
storm detection in high resolution climate data
http://www.geosci-model-dev-discuss.net/8/7727/2015/gmdd-8-7727-2015.pdf
* GNU Parallel was cited in: Decomposing Digital Paintings into Layers
via RGB-space Geometry http://arxiv.org/pdf/1509.03335.pdf
* GNU Parallel was cited in: Structure and evolutionary history of a
large family of NLR proteins in the zebrafish
http://www.biorxiv.org/content/biorxiv/early/2015/09/18/027151.full.pdf
* GNU Parallel was cited in: Evolution of movement strategies under
competitive interactions
http://digital.csic.es/bitstream/10261/115973/1/evolution_movement_strategies_Kiziridis.pdf
* Automating large numbers of tasks
https://rcc.uchicago.edu/docs/tutorials/kicp-tutorials/running-jobs.html
* Max out your IOPs with GNU Parallel
http://blog.bitratchet.com/2015/11/11/max-out-your-iops-with-gnu-parallel/
* Bug fixes and man page updates.