diff --git a/poetry.lock b/poetry.lock index 45ff56a..35b09b1 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,248 +1,237 @@ [[package]] -category = "dev" -description = "Disable App Nap on macOS >= 10.9" -marker = "sys_platform == \"darwin\"" name = "appnope" +version = "0.1.2" +description = "Disable App Nap on macOS >= 10.9" +category = "dev" optional = false python-versions = "*" -version = "0.1.2" [[package]] -category = "dev" -description = "Atomic file writes." -marker = "sys_platform == \"win32\"" name = "atomicwrites" +version = "1.4.0" +description = "Atomic file writes." +category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "1.4.0" [[package]] -category = "dev" -description = "Classes Without Boilerplate" name = "attrs" +version = "20.3.0" +description = "Classes Without Boilerplate" +category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "20.3.0" [package.extras] -dev = ["coverage (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface", "furo", "sphinx", "pre-commit"] +dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface", "furo", "sphinx", "pre-commit"] docs = ["furo", "sphinx", "zope.interface"] -tests = ["coverage (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface"] -tests_no_zope = ["coverage (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six"] +tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface"] +tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six"] [[package]] -category = "dev" -description = "Specifications for callback functions passed in to an API" name = "backcall" +version = "0.2.0" +description = "Specifications for callback functions passed in to an API" +category = "dev" optional = false python-versions = "*" -version = "0.2.0" [[package]] -category = "dev" -description = "Security oriented static analyser for python code." name = "bandit" +version = "1.6.2" +description = "Security oriented static analyser for python code." +category = "dev" optional = false python-versions = "*" -version = "1.6.2" [package.dependencies] +colorama = {version = ">=0.3.9", markers = "platform_system == \"Windows\""} GitPython = ">=1.0.1" PyYAML = ">=3.13" -colorama = ">=0.3.9" six = ">=1.10.0" stevedore = ">=1.20.0" [[package]] -category = "main" -description = "Screen-scraping library" name = "beautifulsoup4" +version = "4.9.1" +description = "Screen-scraping library" +category = "main" optional = false python-versions = "*" -version = "4.9.1" [package.dependencies] -soupsieve = [">1.2", "<2.0"] +soupsieve = [ + ">1.2", + "<2.0", +] [package.extras] html5lib = ["html5lib"] lxml = ["lxml"] [[package]] -category = "main" -description = "Freely available tools for computational molecular biology." name = "biopython" +version = "1.77" +description = "Freely available tools for computational molecular biology." +category = "main" optional = false python-versions = "*" -version = "1.77" [package.dependencies] numpy = "*" [[package]] -category = "main" -description = "Python package for providing Mozilla's CA Bundle." name = "certifi" +version = "2020.12.5" +description = "Python package for providing Mozilla's CA Bundle." +category = "main" optional = false python-versions = "*" -version = "2020.12.5" [[package]] -category = "main" -description = "Universal encoding detector for Python 2 and 3" name = "chardet" +version = "3.0.4" +description = "Universal encoding detector for Python 2 and 3" +category = "main" optional = false python-versions = "*" -version = "3.0.4" [[package]] -category = "dev" -description = "Cross-platform colored terminal text." -marker = "platform_system == \"Windows\" or sys_platform == \"win32\"" name = "colorama" +version = "0.4.4" +description = "Cross-platform colored terminal text." +category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "0.4.4" [[package]] -category = "main" -description = "Confluent's Python client for Apache Kafka" name = "confluent-kafka" +version = "1.5.0" +description = "Confluent's Python client for Apache Kafka" +category = "main" optional = false python-versions = "*" -version = "1.5.0" [package.extras] -avro = ["fastavro (>=0.23.0)", "requests", "avro (1.10.0)", "avro-python3 (1.10.0)"] -dev = ["pytest-timeout", "flake8", "fastavro (>=0.23.0)", "requests", "pytest (4.6.4)", "avro (1.10.0)", "avro-python3 (1.10.0)", "pytest"] -doc = ["sphinx", "sphinx-rtd-theme", "fastavro (>=0.23.0)", "requests", "avro (1.10.0)", "avro-python3 (1.10.0)"] +avro = ["fastavro (>=0.23.0)", "requests", "avro (==1.10.0)", "avro-python3 (==1.10.0)"] +dev = ["pytest-timeout", "flake8", "fastavro (>=0.23.0)", "requests", "pytest (==4.6.4)", "avro (==1.10.0)", "avro-python3 (==1.10.0)", "pytest"] +doc = ["sphinx", "sphinx-rtd-theme", "fastavro (>=0.23.0)", "requests", "avro (==1.10.0)", "avro-python3 (==1.10.0)"] json = ["jsonschema", "requests"] protobuf = ["protobuf", "requests"] schema-registry = ["requests"] [[package]] -category = "dev" -description = "Decorators for Humans" name = "decorator" +version = "4.4.2" +description = "Decorators for Humans" +category = "dev" optional = false python-versions = ">=2.6, !=3.0.*, !=3.1.*" -version = "4.4.2" [[package]] -category = "main" -description = "A Python library for the Docker Engine API." name = "docker" +version = "4.2.2" +description = "A Python library for the Docker Engine API." +category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "4.2.2" [package.dependencies] +pypiwin32 = {version = "223", markers = "sys_platform == \"win32\" and python_version >= \"3.6\""} requests = ">=2.14.2,<2.18.0 || >2.18.0" six = ">=1.4.0" websocket-client = ">=0.32.0" -[package.dependencies.pypiwin32] -python = ">=3.6" -version = "223" - [package.extras] ssh = ["paramiko (>=2.4.2)"] tls = ["pyOpenSSL (>=17.5.0)", "cryptography (>=1.3.4)", "idna (>=2.0.0)"] [[package]] -category = "dev" -description = "the modular source code checker: pep8 pyflakes and co" name = "flake8" +version = "3.8.3" +description = "the modular source code checker: pep8 pyflakes and co" +category = "dev" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7" -version = "3.8.3" [package.dependencies] +importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} mccabe = ">=0.6.0,<0.7.0" pycodestyle = ">=2.6.0a1,<2.7.0" pyflakes = ">=2.2.0,<2.3.0" -[package.dependencies.importlib-metadata] -python = "<3.8" -version = "*" - [[package]] -category = "dev" -description = "Git Object Database" name = "gitdb" +version = "4.0.5" +description = "Git Object Database" +category = "dev" optional = false python-versions = ">=3.4" -version = "4.0.5" [package.dependencies] smmap = ">=3.0.1,<4" [[package]] -category = "dev" -description = "Python Git Library" name = "gitpython" +version = "3.1.12" +description = "Python Git Library" +category = "dev" optional = false python-versions = ">=3.4" -version = "3.1.12" [package.dependencies] gitdb = ">=4.0.1,<5" [[package]] -category = "main" -description = "Internationalized Domain Names in Applications (IDNA)" name = "idna" +version = "2.10" +description = "Internationalized Domain Names in Applications (IDNA)" +category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "2.10" [[package]] -category = "dev" -description = "Read metadata from Python packages" -marker = "python_version < \"3.8\"" name = "importlib-metadata" +version = "3.3.0" +description = "Read metadata from Python packages" +category = "dev" optional = false python-versions = ">=3.6" -version = "3.3.0" [package.dependencies] +typing-extensions = {version = ">=3.6.4", markers = "python_version < \"3.8\""} zipp = ">=0.5" -[package.dependencies.typing-extensions] -python = "<3.8" -version = ">=3.6.4" - [package.extras] docs = ["sphinx", "jaraco.packaging (>=3.2)", "rst.linker (>=1.9)"] -testing = ["pytest (>=3.5,<3.7.3 || >3.7.3)", "pytest-checkdocs (>=1.2.3)", "pytest-flake8", "pytest-cov", "jaraco.test (>=3.2.0)", "packaging", "pep517", "pyfakefs", "flufl.flake8", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"] +testing = ["pytest (>=3.5,!=3.7.3)", "pytest-checkdocs (>=1.2.3)", "pytest-flake8", "pytest-cov", "jaraco.test (>=3.2.0)", "packaging", "pep517", "pyfakefs", "flufl.flake8", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"] [[package]] -category = "dev" -description = "iniconfig: brain-dead simple config-ini parsing" name = "iniconfig" +version = "1.1.1" +description = "iniconfig: brain-dead simple config-ini parsing" +category = "dev" optional = false python-versions = "*" -version = "1.1.1" [[package]] -category = "dev" -description = "IPython: Productive Interactive Computing" name = "ipython" +version = "7.19.0" +description = "IPython: Productive Interactive Computing" +category = "dev" optional = false python-versions = ">=3.7" -version = "7.19.0" [package.dependencies] -appnope = "*" +appnope = {version = "*", markers = "sys_platform == \"darwin\""} backcall = "*" -colorama = "*" +colorama = {version = "*", markers = "sys_platform == \"win32\""} decorator = "*" jedi = ">=0.10" -pexpect = ">4.3" +pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""} pickleshare = "*" prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0" pygments = "*" -setuptools = ">=18.5" traitlets = ">=4.2" [package.extras] @@ -257,85 +246,81 @@ qtconsole = ["qtconsole"] test = ["nose (>=0.10.1)", "requests", "testpath", "pygments", "nbformat", "ipykernel", "numpy (>=1.14)"] [[package]] -category = "dev" -description = "Vestigial utilities from IPython" name = "ipython-genutils" +version = "0.2.0" +description = "Vestigial utilities from IPython" +category = "dev" optional = false python-versions = "*" -version = "0.2.0" [[package]] -category = "dev" -description = "An autocompletion tool for Python that can be used for text editors." name = "jedi" +version = "0.18.0" +description = "An autocompletion tool for Python that can be used for text editors." +category = "dev" optional = false python-versions = ">=3.6" -version = "0.18.0" [package.dependencies] parso = ">=0.8.0,<0.9.0" [package.extras] -qa = ["flake8 (3.8.3)", "mypy (0.782)"] +qa = ["flake8 (==3.8.3)", "mypy (==0.782)"] testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<6.0.0)"] [[package]] -category = "dev" -description = "An implementation of JSON Schema validation for Python" name = "jsonschema" +version = "3.2.0" +description = "An implementation of JSON Schema validation for Python" +category = "dev" optional = false python-versions = "*" -version = "3.2.0" [package.dependencies] attrs = ">=17.4.0" +importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} pyrsistent = ">=0.14.0" -setuptools = "*" six = ">=1.11.0" -[package.dependencies.importlib-metadata] -python = "<3.8" -version = "*" - [package.extras] format = ["idna", "jsonpointer (>1.13)", "rfc3987", "strict-rfc3339", "webcolors"] format_nongpl = ["idna", "jsonpointer (>1.13)", "webcolors", "rfc3986-validator (>0.1.0)", "rfc3339-validator"] [[package]] -category = "main" -description = "KBase Workspace Client and Utilities" name = "kbase-workspace-client" +version = "0.2.1" +description = "KBase Workspace Client and Utilities" +category = "main" optional = false python-versions = ">=3.6,<4.0" -version = "0.2.1" [package.dependencies] biopython = ">=1.76,<2.0" requests = ">=2" [[package]] -category = "main" -description = "A fast and complete Python implementation of Markdown" name = "markdown2" +version = "2.3.9" +description = "A fast and complete Python implementation of Markdown" +category = "main" optional = false python-versions = "*" -version = "2.3.9" [[package]] -category = "dev" -description = "McCabe checker, plugin for flake8" name = "mccabe" +version = "0.6.1" +description = "McCabe checker, plugin for flake8" +category = "dev" optional = false python-versions = "*" -version = "0.6.1" [[package]] -category = "dev" -description = "Optional static typing for Python" name = "mypy" +version = "0.782" +description = "Optional static typing for Python" +category = "dev" optional = false python-versions = ">=3.5" -version = "0.782" [package.dependencies] mypy-extensions = ">=0.4.3,<0.5.0" @@ -346,217 +331,208 @@ typing-extensions = ">=3.7.4" dmypy = ["psutil (>=4.0)"] [[package]] -category = "dev" -description = "Experimental type system extensions for programs checked with the mypy typechecker." name = "mypy-extensions" +version = "0.4.3" +description = "Experimental type system extensions for programs checked with the mypy typechecker." +category = "dev" optional = false python-versions = "*" -version = "0.4.3" [[package]] -category = "main" -description = "NumPy is the fundamental package for array computing with Python." name = "numpy" +version = "1.19.5" +description = "NumPy is the fundamental package for array computing with Python." +category = "main" optional = false python-versions = ">=3.6" -version = "1.19.5" [[package]] -category = "dev" -description = "Core utilities for Python packages" name = "packaging" +version = "20.8" +description = "Core utilities for Python packages" +category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "20.8" [package.dependencies] pyparsing = ">=2.0.2" [[package]] -category = "dev" -description = "A Python Parser" name = "parso" +version = "0.8.1" +description = "A Python Parser" +category = "dev" optional = false python-versions = ">=3.6" -version = "0.8.1" [package.extras] -qa = ["flake8 (3.8.3)", "mypy (0.782)"] +qa = ["flake8 (==3.8.3)", "mypy (==0.782)"] testing = ["docopt", "pytest (<6.0.0)"] [[package]] -category = "dev" -description = "Python Build Reasonableness" name = "pbr" +version = "5.5.1" +description = "Python Build Reasonableness" +category = "dev" optional = false python-versions = ">=2.6" -version = "5.5.1" [[package]] -category = "dev" -description = "Pexpect allows easy control of interactive console applications." -marker = "sys_platform != \"win32\"" name = "pexpect" +version = "4.8.0" +description = "Pexpect allows easy control of interactive console applications." +category = "dev" optional = false python-versions = "*" -version = "4.8.0" [package.dependencies] ptyprocess = ">=0.5" [[package]] -category = "dev" -description = "Tiny 'shelve'-like database with concurrency support" name = "pickleshare" +version = "0.7.5" +description = "Tiny 'shelve'-like database with concurrency support" +category = "dev" optional = false python-versions = "*" -version = "0.7.5" [[package]] -category = "dev" -description = "plugin and hook calling mechanisms for python" name = "pluggy" +version = "0.13.1" +description = "plugin and hook calling mechanisms for python" +category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "0.13.1" [package.dependencies] -[package.dependencies.importlib-metadata] -python = "<3.8" -version = ">=0.12" +importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""} [package.extras] dev = ["pre-commit", "tox"] [[package]] -category = "dev" -description = "Library for building powerful interactive command lines in Python" name = "prompt-toolkit" +version = "3.0.9" +description = "Library for building powerful interactive command lines in Python" +category = "dev" optional = false python-versions = ">=3.6.1" -version = "3.0.9" [package.dependencies] wcwidth = "*" [[package]] -category = "dev" -description = "Run a subprocess in a pseudo terminal" -marker = "sys_platform != \"win32\"" name = "ptyprocess" +version = "0.7.0" +description = "Run a subprocess in a pseudo terminal" +category = "dev" optional = false python-versions = "*" -version = "0.7.0" [[package]] -category = "dev" -description = "library with cross-python path, ini-parsing, io, code, log facilities" name = "py" +version = "1.10.0" +description = "library with cross-python path, ini-parsing, io, code, log facilities" +category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "1.10.0" [[package]] -category = "dev" -description = "Python style guide checker" name = "pycodestyle" +version = "2.6.0" +description = "Python style guide checker" +category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "2.6.0" [[package]] -category = "dev" -description = "passive checker of Python programs" name = "pyflakes" +version = "2.2.0" +description = "passive checker of Python programs" +category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "2.2.0" [[package]] -category = "dev" -description = "Pygments is a syntax highlighting package written in Python." name = "pygments" +version = "2.7.3" +description = "Pygments is a syntax highlighting package written in Python." +category = "dev" optional = false python-versions = ">=3.5" -version = "2.7.3" [[package]] -category = "dev" -description = "Python parsing module" name = "pyparsing" +version = "2.4.7" +description = "Python parsing module" +category = "dev" optional = false python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" -version = "2.4.7" [[package]] -category = "main" -description = "" -marker = "sys_platform == \"win32\" and python_version >= \"3.6\"" name = "pypiwin32" +version = "223" +description = "" +category = "main" optional = false python-versions = "*" -version = "223" [package.dependencies] pywin32 = ">=223" [[package]] -category = "dev" -description = "Persistent/Functional/Immutable data structures" name = "pyrsistent" +version = "0.17.3" +description = "Persistent/Functional/Immutable data structures" +category = "dev" optional = false python-versions = ">=3.5" -version = "0.17.3" [[package]] -category = "dev" -description = "pytest: simple powerful testing with Python" name = "pytest" +version = "6.2.1" +description = "pytest: simple powerful testing with Python" +category = "dev" optional = false python-versions = ">=3.6" -version = "6.2.1" [package.dependencies] -atomicwrites = ">=1.0" +atomicwrites = {version = ">=1.0", markers = "sys_platform == \"win32\""} attrs = ">=19.2.0" -colorama = "*" +colorama = {version = "*", markers = "sys_platform == \"win32\""} +importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""} iniconfig = "*" packaging = "*" pluggy = ">=0.12,<1.0.0a1" py = ">=1.8.2" toml = "*" -[package.dependencies.importlib-metadata] -python = "<3.8" -version = ">=0.12" - [package.extras] testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "requests", "xmlschema"] [[package]] -category = "main" -description = "Python for Window Extensions" -marker = "sys_platform == \"win32\" and python_version >= \"3.6\"" name = "pywin32" +version = "300" +description = "Python for Window Extensions" +category = "main" optional = false python-versions = "*" -version = "300" [[package]] -category = "main" -description = "YAML parser and emitter for Python" name = "pyyaml" +version = "5.4" +description = "YAML parser and emitter for Python" +category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "5.3.1" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" [[package]] -category = "main" -description = "Python HTTP for Humans." name = "requests" +version = "2.24.0" +description = "Python HTTP for Humans." +category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "2.24.0" [package.dependencies] certifi = ">=2017.4.17" @@ -566,15 +542,15 @@ urllib3 = ">=1.21.1,<1.25.0 || >1.25.0,<1.25.1 || >1.25.1,<1.26" [package.extras] security = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)"] -socks = ["PySocks (>=1.5.6,<1.5.7 || >1.5.7)", "win-inet-pton"] +socks = ["PySocks (>=1.5.6,!=1.5.7)", "win-inet-pton"] [[package]] -category = "dev" -description = "A utility library for mocking out the `requests` Python library." name = "responses" +version = "0.11.0" +description = "A utility library for mocking out the `requests` Python library." +category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "0.11.0" [package.dependencies] requests = ">=2.0" @@ -585,59 +561,56 @@ urllib3 = ">=1.25.10" tests = ["coverage (>=3.7.1,<6.0.0)", "pytest-cov", "pytest-localserver", "flake8", "pytest (>=4.6,<5.0)", "pytest (>=4.6)"] [[package]] -category = "main" 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