unit_test.yml

name: CI unit testing

on:
  workflow_call:
    secrets:
      GHCR_USERNAME:
        required: true
      GHCR_TOKEN:
        required: true
      CODECOV_TOKEN:
        required: true

jobs:
  run_unit_tests:
    runs-on: ubuntu-latest
    steps:
    -
      name: Log in to the Container registry
      uses: docker/login-action@master
      with:
        registry: ghcr.io
        username: ${{ secrets.GHCR_USERNAME }}
        password: ${{ secrets.GHCR_TOKEN }}
    -
      name: Repo checkout
      uses: actions/checkout@master
    -
      name: Set up environment
      run: |
        if [ ${{ github.base_ref }} == 'main' ]; then
            branch=''
        else
            branch=`echo "-""${{ github.base_ref }}" | awk '{print tolower($0)}'`
        fi
        narrative_version=`grep '\"version\":' src/config.json.templ | awk '{print $2}' | sed 's/"//g'`
        narrative_git_hash=`grep '\"git_commit_hash\":' src/config.json.templ | awk '{print $2}' | sed 's/"//g' | sed 's/,//'`
        echo "APP_IMAGE_TAG=ghcr.io/${{ github.repository }}${branch}:pr-${{ github.event.pull_request.number }}" >> $GITHUB_ENV
        echo "APP_VERSION_IMAGE_TAG=ghcr.io/${{ github.repository }}${branch}_version:pr-${{ github.event.pull_request.number }}" >> $GITHUB_ENV
        echo "BRANCH=${branch}" >> $GITHUB_ENV
        echo "BUILD_DATE=$(date -u +"%Y-%m-%dT%H:%M:%SZ")" >> $GITHUB_ENV
        echo "NARRATIVE_GIT_HASH=${narrative_git_hash}" >> $GITHUB_ENV
        echo "NARRATIVE_VERSION=${narrative_version}" >> $GITHUB_ENV
        echo "PR=pr-${{ github.event.pull_request.number }}" >> $GITHUB_ENV
        echo "VCS_REF=$(echo "${{ github.event.pull_request.head.sha }}" | cut -c -7)" >> $GITHUB_ENV
    -
      name: Pull docker image
      shell: bash -l {0}
      run: docker pull ${{ env.APP_IMAGE_TAG }}
    -
      name: Run backend tests
      id: test_backend
      shell: bash -l {0}
      run: |
        mkdir -p ${{ github.workspace }}/output
        sudo chown nobody ${{ github.workspace }}/output
        sudo chmod -R 0777 ${{ github.workspace }}/output
        docker run -v "${{ github.workspace }}/output:/tmp/output" --user nobody ${{ env.APP_IMAGE_TAG }} /bin/bash scripts/run_backend_tests.sh
      continue-on-error: true
    -
      name: Use Node JS 20
      uses: actions/setup-node@main
      with:
        node-version: 20
    -
      name: Install JS dependencies
      run: |
        npm ci
        npm run install-npm
        cp src/config.json kbase-extension/static/kbase/config/
    -
      name: Run Narrative Frontend Unit Tests
      id: test_frontend
      shell: bash -l {0}
      run: bash scripts/run_tests.sh -u -c ${{ env.APP_IMAGE_TAG }}
      continue-on-error: true
    -
      name: Send to Codecov
      id: send_to_codecov
      uses: codecov/codecov-action@main
      continue-on-error: true
      with:
        token: ${{ secrets.CODECOV_TOKEN }}
        files: ./output/coverage.xml,./js-coverage/lcov/lcov.info
        fail_ci_if_error: true
    -
      name: outcome
      if: steps.test_backend.outcome != 'success' || steps.test_frontend.outcome != 'success' || steps.send_to_codecov.outcome != 'success'
      run: |
        echo "backend tests: ${{ steps.test_backend.outcome }}"
        echo "frontend tests: ${{ steps.test_frontend.outcome }}"
        echo "upload coverage: ${{ steps.send_to_codecov.outcome }}"
        exit 1