From 221ee20b2bfe10d24ead1729857b52b55710ad9e Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed, 1 Jan 2025 18:51:48 +0000 Subject: [PATCH] Bump the pip group across 1 directory with 22 updates Bumps the pip group with 22 updates in the /src directory: | Package | From | To | | --- | --- | --- | | [coverage](https://github.com/nedbat/coveragepy) | `7.6.2` | `7.6.10` | | [pytest](https://github.com/pytest-dev/pytest) | `8.3.3` | `8.3.4` | | [pytest-cov](https://github.com/pytest-dev/pytest-cov) | `5.0.0` | `6.0.0` | | [ruff](https://github.com/astral-sh/ruff) | `0.6.9` | `0.8.4` | | [vcrpy](https://github.com/kevin1024/vcrpy) | `6.0.2` | `7.0.0` | | [bokeh](https://github.com/bokeh/bokeh) | `3.6.0` | `3.6.2` | | [certifi](https://github.com/certifi/python-certifi) | `2024.8.30` | `2024.12.14` | | [cryptography](https://github.com/pyca/cryptography) | `43.0.1` | `44.0.0` | | [markupsafe](https://github.com/pallets/markupsafe) | `3.0.1` | `3.0.2` | | [networkx](https://github.com/networkx/networkx) | `3.4` | `3.4.2` | | [numpy](https://github.com/numpy/numpy) | `2.1.2` | `2.2.1` | | [pillow](https://github.com/python-pillow/Pillow) | `10.4.0` | `11.0.0` | | [pycurl](https://github.com/pycurl/pycurl) | `7.45.3` | `7.45.4` | | [pyopenssl](https://github.com/pyca/pyopenssl) | `24.2.1` | `24.3.0` | | python-daemon | `3.0.1` | `3.1.2` | | [setuptools](https://github.com/pypa/setuptools) | `75.1.0` | `75.6.0` | | [six](https://github.com/benjaminp/six) | `1.16.0` | `1.17.0` | | [wordcloud](https://github.com/amueller/word_cloud) | `1.9.3` | `1.9.4` | | [ipython](https://github.com/ipython/ipython) | `8.28.2` | `8.31.0` | | [jinja2](https://github.com/pallets/jinja) | `3.1.4` | `3.1.5` | | [scikit-learn](https://github.com/scikit-learn/scikit-learn) | `1.5.2` | `1.6.0` | | [tornado](https://github.com/tornadoweb/tornado) | `6.4.1` | `6.4.2` | Updates `coverage` from 7.6.2 to 7.6.10 - [Release notes](https://github.com/nedbat/coveragepy/releases) - [Changelog](https://github.com/nedbat/coveragepy/blob/master/CHANGES.rst) - [Commits](https://github.com/nedbat/coveragepy/compare/7.6.2...7.6.10) Updates `pytest` from 8.3.3 to 8.3.4 - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest/compare/8.3.3...8.3.4) Updates `pytest-cov` from 5.0.0 to 6.0.0 - [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest-cov/compare/v5.0.0...v6.0.0) Updates `ruff` from 0.6.9 to 0.8.4 - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](https://github.com/astral-sh/ruff/compare/0.6.9...0.8.4) Updates `vcrpy` from 6.0.2 to 7.0.0 - [Release notes](https://github.com/kevin1024/vcrpy/releases) - [Changelog](https://github.com/kevin1024/vcrpy/blob/master/docs/changelog.rst) - [Commits](https://github.com/kevin1024/vcrpy/compare/v6.0.2...v7.0.0) Updates `bokeh` from 3.6.0 to 3.6.2 - [Changelog](https://github.com/bokeh/bokeh/blob/3.6.2/docs/CHANGELOG) - [Commits](https://github.com/bokeh/bokeh/compare/3.6.0...3.6.2) Updates `certifi` from 2024.8.30 to 2024.12.14 - [Commits](https://github.com/certifi/python-certifi/compare/2024.08.30...2024.12.14) Updates `cryptography` from 43.0.1 to 44.0.0 - [Changelog](https://github.com/pyca/cryptography/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pyca/cryptography/compare/43.0.1...44.0.0) Updates `markupsafe` from 3.0.1 to 3.0.2 - [Release notes](https://github.com/pallets/markupsafe/releases) - [Changelog](https://github.com/pallets/markupsafe/blob/main/CHANGES.rst) - [Commits](https://github.com/pallets/markupsafe/compare/3.0.1...3.0.2) Updates `networkx` from 3.4 to 3.4.2 - [Release notes](https://github.com/networkx/networkx/releases) - [Commits](https://github.com/networkx/networkx/compare/networkx-3.4...networkx-3.4.2) Updates `numpy` from 2.1.2 to 2.2.1 - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Commits](https://github.com/numpy/numpy/compare/v2.1.2...v2.2.1) Updates `pillow` from 10.4.0 to 11.0.0 - [Release notes](https://github.com/python-pillow/Pillow/releases) - [Changelog](https://github.com/python-pillow/Pillow/blob/main/CHANGES.rst) - [Commits](https://github.com/python-pillow/Pillow/compare/10.4.0...11.0.0) Updates `pycurl` from 7.45.3 to 7.45.4 - [Changelog](https://github.com/pycurl/pycurl/blob/master/ChangeLog) - [Commits](https://github.com/pycurl/pycurl/commits) Updates `pyopenssl` from 24.2.1 to 24.3.0 - [Changelog](https://github.com/pyca/pyopenssl/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pyca/pyopenssl/compare/24.2.1...24.3.0) Updates `python-daemon` from 3.0.1 to 3.1.2 Updates `setuptools` from 75.1.0 to 75.6.0 - [Release notes](https://github.com/pypa/setuptools/releases) - [Changelog](https://github.com/pypa/setuptools/blob/main/NEWS.rst) - [Commits](https://github.com/pypa/setuptools/compare/v75.1.0...v75.6.0) Updates `six` from 1.16.0 to 1.17.0 - [Changelog](https://github.com/benjaminp/six/blob/main/CHANGES) - [Commits](https://github.com/benjaminp/six/compare/1.16.0...1.17.0) Updates `wordcloud` from 1.9.3 to 1.9.4 - [Release notes](https://github.com/amueller/word_cloud/releases) - [Changelog](https://github.com/amueller/word_cloud/blob/main/doc/changelog.rst) - [Commits](https://github.com/amueller/word_cloud/compare/1.9.3...1.9.4) Updates `ipython` from 8.28.2 to 8.31.0 - [Release notes](https://github.com/ipython/ipython/releases) - [Commits](https://github.com/ipython/ipython/commits/8.31.0) Updates `jinja2` from 3.1.4 to 3.1.5 - [Release notes](https://github.com/pallets/jinja/releases) - [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst) - [Commits](https://github.com/pallets/jinja/compare/3.1.4...3.1.5) Updates `scikit-learn` from 1.5.2 to 1.6.0 - [Release notes](https://github.com/scikit-learn/scikit-learn/releases) - [Commits](https://github.com/scikit-learn/scikit-learn/compare/1.5.2...1.6.0) Updates `tornado` from 6.4.1 to 6.4.2 - [Changelog](https://github.com/tornadoweb/tornado/blob/v6.4.2/docs/releases.rst) - [Commits](https://github.com/tornadoweb/tornado/compare/v6.4.1...v6.4.2) --- updated-dependencies: - dependency-name: coverage dependency-type: direct:development update-type: version-update:semver-patch dependency-group: pip - dependency-name: pytest dependency-type: direct:development update-type: version-update:semver-patch dependency-group: pip - dependency-name: pytest-cov dependency-type: direct:development update-type: version-update:semver-major dependency-group: pip - dependency-name: ruff dependency-type: direct:development update-type: version-update:semver-minor dependency-group: pip - dependency-name: vcrpy dependency-type: direct:development update-type: version-update:semver-major dependency-group: pip - dependency-name: bokeh dependency-type: direct:production update-type: version-update:semver-patch dependency-group: pip - dependency-name: certifi dependency-type: direct:production update-type: version-update:semver-minor dependency-group: pip - dependency-name: cryptography dependency-type: direct:production update-type: version-update:semver-major dependency-group: pip - dependency-name: markupsafe dependency-type: direct:production update-type: version-update:semver-patch dependency-group: pip - dependency-name: networkx dependency-type: direct:production update-type: version-update:semver-patch dependency-group: pip - dependency-name: numpy dependency-type: direct:production update-type: version-update:semver-minor dependency-group: pip - dependency-name: pillow dependency-type: direct:production update-type: version-update:semver-major dependency-group: pip - dependency-name: pycurl dependency-type: direct:production update-type: version-update:semver-patch dependency-group: pip - dependency-name: pyopenssl dependency-type: direct:production update-type: version-update:semver-minor dependency-group: pip - dependency-name: python-daemon dependency-type: direct:production update-type: version-update:semver-minor dependency-group: pip - dependency-name: setuptools dependency-type: direct:production update-type: version-update:semver-minor dependency-group: pip - dependency-name: six dependency-type: direct:production update-type: version-update:semver-minor dependency-group: pip - dependency-name: wordcloud dependency-type: direct:production update-type: version-update:semver-patch dependency-group: pip - dependency-name: ipython dependency-type: direct:production update-type: version-update:semver-minor dependency-group: pip - dependency-name: jinja2 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: pip - dependency-name: scikit-learn dependency-type: direct:production update-type: version-update:semver-minor dependency-group: pip - dependency-name: tornado dependency-type: direct:production update-type: version-update:semver-patch dependency-group: pip ... Signed-off-by: dependabot[bot] --- src/requirements-dev.txt | 10 +++++----- src/requirements.txt | 34 +++++++++++++++++----------------- 2 files changed, 22 insertions(+), 22 deletions(-) diff --git a/src/requirements-dev.txt b/src/requirements-dev.txt index 6c046f1f9d..db40eda58b 100644 --- a/src/requirements-dev.txt +++ b/src/requirements-dev.txt @@ -1,7 +1,7 @@ -coverage==7.6.2 -pytest==8.3.3 -pytest-cov==5.0.0 +coverage==7.6.10 +pytest==8.3.4 +pytest-cov==6.0.0 pytest-recording==0.13.2 requests-mock==1.12.1 -ruff==0.6.9 -vcrpy==6.0.2 +ruff==0.8.4 +vcrpy==7.0.0 diff --git a/src/requirements.txt b/src/requirements.txt index 348c2e39ef..1b44f73341 100644 --- a/src/requirements.txt +++ b/src/requirements.txt @@ -1,52 +1,52 @@ appdirs==1.4.4 beautifulsoup4==4.12.3 biopython==1.84 -bokeh==3.6.0 -certifi==2024.8.30 +bokeh==3.6.2 +certifi==2024.12.14 chardet==5.2.0 chart_studio==1.1.0 -cryptography==43.0.1 +cryptography==44.0.0 decorator==5.1.1 ete3==3.1.3 html5lib==1.1 idna==3.10 jsonschema==4.23.0 markdown==3.7 -markupsafe==3.0.1 +markupsafe==3.0.2 ndg-httpsclient==0.5.1 -networkx==3.4 -numpy==2.1.2 +networkx==3.4.2 +numpy==2.2.1 pexpect==4.9.0 pickleshare==0.7.5 -pillow==10.4.0 +pillow==11.0.0 plotly==5.24.1 pyasn1==0.6.1 -pycurl==7.45.3 +pycurl==7.45.4 pygments==2.18.0 -pyopenssl==24.2.1 -python-daemon==3.0.1 +pyopenssl==24.3.0 +python-daemon==3.1.2 python-dateutil==2.9.0.post0 qgrid==1.3.1 rsa==4.9 scipy==1.14.1 seaborn==0.13.2 -setuptools==75.1.0 -six==1.16.0 +setuptools==75.6.0 +six==1.17.0 sympy==1.13.3 terminado==0.18.1 -wordcloud==1.9.3 +wordcloud==1.9.4 # Narrative/Jupyter requirements clustergrammer2==0.18.0 -ipython==8.28.2 +ipython==8.31.0 ipywidgets==8.1.5 -jinja2==3.1.4 +jinja2==3.1.5 # N.b. notebook version must stay under 7 notebook==6.5.7 pandas==2.2.3 pymongo==4.10.1 pyyaml==6.0.2 requests==2.32.3 -scikit-learn==1.5.2 +scikit-learn==1.6.0 statsmodels==0.14.4 -tornado==6.4.1 +tornado==6.4.2