build.yaml

name: build_and_publish
on:
  push:
    branches:
      - stable
      - main

jobs:
  get_version:
    runs-on: ubuntu-latest
    defaults:
      run:
        shell: bash -l {0}
    steps:
      - name: Checkout code
        id: git_checkout
        uses: actions/checkout@v3
      - name: Get version
        id: get_version
        run: |
          CURRENT_VERSION=$(sed -n '/^current_version/{ s/^.\+ = //; p; }' .bumpversion.cfg)
          if [[ "${GITHUB_REF}" == 'refs/heads/stable' ]]; then
            echo "::set-output name=version::${CURRENT_VERSION}"
          elif [[ "${GITHUB_REF}" == 'refs/heads/main' ]]; then
            DEV_VERSION="${CURRENT_VERSION}"+dev$(echo "${GITHUB_SHA}" | cut -c-7)
            echo "::set-output name=version::${DEV_VERSION}"
            echo "::set-output name=bump_version::yes"
          else
            echo "got bad gh ref: ${GITHUB_REF}" 1>&2
            exit 1
          fi
    outputs:
      bump_version: ${{ steps.get_version.outputs.bump_version }}
      version: ${{ steps.get_version.outputs.version }}

  build_and_publish_on_conda:
    runs-on: ubuntu-latest
    needs: get_version
    defaults:
      run:
        shell: bash -l {0}
    env:
      VERSION: ${{ needs.get_version.outputs.version }}
    steps:
      - name: Checkout code
        id: git_checkout
        uses: actions/checkout@v3
      - name: Setup conda
        id: setup_conda
        uses: conda-incubator/setup-miniconda@v2
        with:
          python-version: 3.9
          miniforge-variant: Mambaforge-pypy3
          channels: umccr,bioconda,conda-forge,defaults
          channel-priority: true
      - name: Prepare env
        id: prepare_env
        run: |
          mamba install boa anaconda-client bump2version
      # When on development branch (inferred from bump_version value), append '-dev' to package name and set
      # commit-specific version
      - name: Set package name and version
        if: ${{ needs.get_version.outputs.bump_version == 'yes' }}
        run: |
          sed -i 's/name: bactabolize/name: bactabolize-dev/' conda/bactabolize/meta.yaml;
          bump2version patch \
            --new-version "${VERSION}" \
            --allow-dirty \
            --no-commit
      - name: Build and upload conda package
        run: |
          conda mambabuild \
            --token "${{ secrets.ANACONDA_TOKEN }}" \
            conda/bactabolize/

  # build_and_publish_on_dockerhub:
  #   runs-on: ubuntu-latest
  #   needs:
  #     - get_version
  #     - build_and_publish_on_conda
  #   # Only push on push to stable, which implicitly should be only version bumps
  #   if: github.ref == 'refs/heads/stable'
  #   defaults:
  #     run:
  #       shell: bash -l {0}
  #   env:
  #     DOCKERHUB_REPO: "docker.io/scwatts/bactabolize"
  #     VERSION: ${{ needs.get_version.outputs.version }}
  #   steps:
  #     - name: Checkout code
  #       id: git_checkout
  #       uses: actions/checkout@v3
  #     - name: Build Docker image
  #       run: |
  #         docker build \
  #           --tag "${DOCKERHUB_REPO}:${VERSION}" \
  #           --file docker/Dockerfile \
  #           ./
  #     - name: DockerHub auth
  #       run: |
  #         echo "${{ secrets.DOCKERHUB_TOKEN }}" | \
  #           docker login \
  #             --username "${{ secrets.DOCKERHUB_USERNAME }}" \
  #             --password-stdin
  #     - name: DockerHub push
  #       run: |
  #         docker push "${DOCKERHUB_REPO}:${VERSION}"