From bcb09c08f1e8d5c7229200b301e384f08eadc234 Mon Sep 17 00:00:00 2001 From: Helena Cooper Date: Tue, 9 Jul 2024 14:06:27 +1000 Subject: [PATCH] Update README.md --- README.md | 7 +++++++ 1 file changed, 7 insertions(+) diff --git a/README.md b/README.md index dd0b8a8..407e55a 100644 --- a/README.md +++ b/README.md @@ -17,6 +17,13 @@ It also allows high-throughput growth phenotype simulation via Flux Balance Anal usage profiles and Single Gene Knockout analysis (SGK) to predict the impacts of single gene knockout mutations. These can be performed under a variety of growth conditions and mediums. +## Compatible pan-reference metabolic models + +|Species |Database |Reference | +|----------- |----------- |----------- | +|_Klebsiella pneumoniae_ Species Complex|[Model & Associated Sequences](https://github.com/kelwyres/KpSC-pan-metabolic-model)|[Cooper 2024, _MGen_](https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.001206)| +|_Bacillus subtilis_ |[Model](https://github.com/SBGlab/Bacillus_Subtilis_multistrain_GEM/tree/main/iBB1018) & [Gene Annotations](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000009045.1/) |[Blázquez 2023, _Int. J. Mol. Sci._](https://www.mdpi.com/1422-0067/24/8/7091)| + ## Licence and citation Bactabolize is freely available under a [GNU General Public License v3.0](https://www.gnu.org/licenses/gpl-3.0.en.html).