From 88956d1e3ce249c86c1b19e75672b82a27742b61 Mon Sep 17 00:00:00 2001 From: andy Date: Mon, 26 Aug 2024 21:41:50 -0500 Subject: [PATCH] QC v0.2.1 --- Manifest.toml | 152 ++++++++++++++++++++++++++------------------------ Project.toml | 2 +- 2 files changed, 80 insertions(+), 74 deletions(-) diff --git a/Manifest.toml b/Manifest.toml index a4b25bf..8dcf0d7 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -1,8 +1,8 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.3" +julia_version = "1.10.4" manifest_format = "2.0" -project_hash = "a9a73cb81ab46497a689bb2e6709453186681022" +project_hash = "f1e6ec0bfff310a59240665a15dcfb828c722b7f" [[deps.ADTypes]] git-tree-sha1 = "99a6f5d0ce1c7c6afdb759daa30226f71c54f6b0" @@ -175,9 +175,9 @@ uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" version = "1.5.0" [[deps.Bijections]] -git-tree-sha1 = "95f5c7e2d177b7ba1a240b0518038b975d72a8c0" +git-tree-sha1 = "f5c6a2e1df5f1b2fd9262be1ce1e68a4eafff670" uuid = "e2ed5e7c-b2de-5872-ae92-c73ca462fb04" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -284,10 +284,10 @@ uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" version = "0.2.4" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.CommonWorldInvalidations]] git-tree-sha1 = "ae52d1c52048455e85a387fbee9be553ec2b68d0" @@ -389,9 +389,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "0e0a1264b0942f1f3abb2b30891f2a590cc652ac" +git-tree-sha1 = "e6c693a0e4394f8fda0e51a5bdf5aef26f8235e9" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.110" +version = "0.25.111" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -425,10 +425,10 @@ uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" [[deps.DynamicPolynomials]] -deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Pkg", "Reexport", "Test"] -git-tree-sha1 = "30a1848c4f4fc35d1d4bbbd125650f6a11b5bc6c" +deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "Test"] +git-tree-sha1 = "bbf1ace0781d9744cb697fb856bd2c3f6568dadb" uuid = "7c1d4256-1411-5781-91ec-d7bc3513ac07" -version = "0.5.7" +version = "0.6.0" [[deps.EarCut_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -477,15 +477,15 @@ uuid = "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636" version = "0.8.5" [[deps.Extents]] -git-tree-sha1 = "94997910aca72897524d2237c41eb852153b0f65" +git-tree-sha1 = "81023caa0021a41712685887db1fc03db26f41f5" uuid = "411431e0-e8b7-467b-b5e0-f676ba4f2910" -version = "0.1.3" +version = "0.1.4" [[deps.FFMPEG_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "ab3f7e1819dba9434a3a5126510c8fda3a4e7000" +git-tree-sha1 = "8cc47f299902e13f90405ddb5bf87e5d474c0d38" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "6.1.1+0" +version = "6.1.2+0" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -512,10 +512,15 @@ uuid = "8fc22ac5-c921-52a6-82fd-178b2807b824" version = "0.8.3" [[deps.FilePathsBase]] -deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] -git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa" +deps = ["Compat", "Dates"] +git-tree-sha1 = "7878ff7172a8e6beedd1dea14bd27c3c6340d361" uuid = "48062228-2e41-5def-b9a4-89aafe57970f" -version = "0.9.21" +version = "0.9.22" +weakdeps = ["Mmap", "Test"] + + [deps.FilePathsBase.extensions] + FilePathsBaseMmapExt = "Mmap" + FilePathsBaseTestExt = "Test" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" @@ -652,10 +657,10 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] +git-tree-sha1 = "401e4f3f30f43af2c8478fc008da50096ea5240f" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" +version = "8.3.1+0" [[deps.Hwloc_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -726,6 +731,11 @@ git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d" uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" version = "0.1.5" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "14eb2b542e748570b56446f4c50fbfb2306ebc45" @@ -815,10 +825,10 @@ uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JLD2]] -deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Reexport", "Requires", "TranscodingStreams", "UUIDs", "Unicode"] -git-tree-sha1 = "67d4690d32c22e28818a434b293a374cc78473d3" +deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Requires", "TranscodingStreams"] +git-tree-sha1 = "049950edff105ff73918d29dbf109220ff364157" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.4.51" +version = "0.4.52" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -873,12 +883,6 @@ git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" version = "1.3.1" -[[deps.LabelledArrays]] -deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "LinearAlgebra", "MacroTools", "PreallocationTools", "RecursiveArrayTools", "StaticArrays"] -git-tree-sha1 = "e459fda6b68ea8684b3fcd513d2fd1e5130c4402" -uuid = "2ee39098-c373-598a-b85f-a56591580800" -version = "1.16.0" - [[deps.LambertW]] git-tree-sha1 = "c5ffc834de5d61d00d2b0e18c96267cffc21f648" uuid = "984bce1d-4616-540c-a9ee-88d1112d94c9" @@ -1182,10 +1186,10 @@ uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.5+0" [[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6703a85cb3781bd5909d48730a67205f3f31a575" uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" +version = "1.3.3+0" [[deps.OrderedCollections]] git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" @@ -1223,9 +1227,9 @@ version = "0.5.12" [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cb5a2ab6763464ae0f19c86c56c63d4a2b0f5bda" +git-tree-sha1 = "e127b609fb9ecba6f201ba7ab753d5a605d53801" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.52.2+0" +version = "1.54.1+0" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] @@ -1261,18 +1265,6 @@ git-tree-sha1 = "77b3d3605fc1cd0b42d95eba87dfcd2bf67d5ff6" uuid = "647866c9-e3ac-4575-94e7-e3d426903924" version = "0.1.2" -[[deps.PreallocationTools]] -deps = ["Adapt", "ArrayInterface", "ForwardDiff"] -git-tree-sha1 = "6c62ce45f268f3f958821a1e5192cf91c75ae89c" -uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.24" - - [deps.PreallocationTools.extensions] - PreallocationToolsReverseDiffExt = "ReverseDiff" - - [deps.PreallocationTools.weakdeps] - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - [[deps.PrecompileTools]] deps = ["Preferences"] git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" @@ -1285,6 +1277,12 @@ git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.3" +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "cb420f77dc474d23ee47ca8d14c90810cafe69e7" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.6" + [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" @@ -1317,10 +1315,10 @@ uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.10.1" [[deps.QuantumCollocation]] -deps = ["BenchmarkTools", "CairoMakie", "Distributions", "Einsum", "ExponentialAction", "ForwardDiff", "IJulia", "Ipopt", "JLD2", "Libdl", "LinearAlgebra", "MathOptInterface", "NamedTrajectories", "ProgressMeter", "Random", "Reexport", "SparseArrays", "Symbolics", "TestItemRunner", "TestItems", "TrajectoryIndexingUtils"] -git-tree-sha1 = "f1e087c45f987f4de8668b3552ff1b6275bc6a33" +deps = ["BenchmarkTools", "CairoMakie", "Distributions", "Einsum", "ExponentialAction", "ForwardDiff", "IJulia", "Interpolations", "Ipopt", "JLD2", "Libdl", "LinearAlgebra", "MathOptInterface", "NamedTrajectories", "ProgressMeter", "Random", "Reexport", "SparseArrays", "Symbolics", "TestItemRunner", "TestItems", "TrajectoryIndexingUtils"] +git-tree-sha1 = "d39ff0c39e71a515cc7507d1b0575b943f3ed616" uuid = "0dc23a59-5ffb-49af-b6bd-932a8ae77adf" -version = "0.2.0" +version = "0.2.1" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -1435,9 +1433,9 @@ version = "2024.5.8+0" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "5123ca064567e81c31fb3acdf15d2c9459bb7cc3" +git-tree-sha1 = "f46847735df966a3e8b9a01bd307100ec96c42a0" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.50.0" +version = "2.50.3" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1635,21 +1633,28 @@ uuid = "19f23fe9-fdab-4a78-91af-e7b7767979c3" version = "0.2.2" [[deps.SymbolicUtils]] -deps = ["AbstractTrees", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "IfElse", "LabelledArrays", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TermInterface", "TimerOutputs", "Unityper"] -git-tree-sha1 = "d00729521f49d96afd3fcddb437141eb71222886" +deps = ["AbstractTrees", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "IfElse", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TermInterface", "TimerOutputs", "Unityper"] +git-tree-sha1 = "9983eabcbd6c7431e3bd0f34191ec6863b8f8084" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "3.2.0" +version = "3.4.1" + + [deps.SymbolicUtils.extensions] + SymbolicUtilsLabelledArraysExt = "LabelledArrays" + + [deps.SymbolicUtils.weakdeps] + LabelledArrays = "2ee39098-c373-598a-b85f-a56591580800" [[deps.Symbolics]] -deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "IfElse", "LaTeXStrings", "LambertW", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "4224422f6a5452b1accaec15a65a5ce3c2ca4600" +deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "IfElse", "LaTeXStrings", "LambertW", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] +git-tree-sha1 = "95967ac045e22f9e4ec7f198c6ef8583b0268745" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "6.2.0" +version = "6.3.0" [deps.Symbolics.extensions] SymbolicsForwardDiffExt = "ForwardDiff" SymbolicsGroebnerExt = "Groebner" SymbolicsLuxCoreExt = "LuxCore" + SymbolicsNemoExt = "Nemo" SymbolicsPreallocationToolsExt = ["PreallocationTools", "ForwardDiff"] SymbolicsSymPyExt = "SymPy" @@ -1657,6 +1662,7 @@ version = "6.2.0" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Groebner = "0b43b601-686d-58a3-8a1c-6623616c7cd4" LuxCore = "bb33d45b-7691-41d6-9220-0943567d0623" + Nemo = "2edaba10-b0f1-5616-af89-8c11ac63239a" PreallocationTools = "d236fae5-4411-538c-8e31-a6e3d9e00b46" SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" @@ -1773,9 +1779,9 @@ version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "d9717ce3518dc68a99e6b96300813760d887a01d" +git-tree-sha1 = "1165b0443d0eca63ac1e32b8c0eb69ed2f4f8127" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.13.1+0" +version = "2.13.3+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "XML2_jll", "Zlib_jll"] @@ -1861,10 +1867,10 @@ uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" version = "3.9.0+0" [[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e17c115d55c5fbb7e52ebedb427a0dca79d4484e" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.15.2+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] @@ -1872,10 +1878,10 @@ uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" version = "5.8.0+1" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8a22cf860a7d27e4f3498a0fe0811a7957badb38" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.3+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -1918,13 +1924,13 @@ uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" version = "17.4.0+2" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "35976a1216d6c066ea32cba2150c4fa682b276fc" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.0+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "dcc541bb19ed5b0ede95581fb2e41ecf179527d2" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "3.6.0+0" diff --git a/Project.toml b/Project.toml index 0dd4815..5103f12 100644 --- a/Project.toml +++ b/Project.toml @@ -1,7 +1,7 @@ name = "Piccolo" uuid = "c4671d76-df94-11ed-2057-43d4fd632fad" authors = ["Aaron Trowbridge and contributors"] -version = "0.2.0" +version = "0.2.1" [deps] CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0"