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RawTools GUI does not create parse matrix when using quan option #34

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CKFF opened this issue Mar 7, 2019 · 1 comment
Open

RawTools GUI does not create parse matrix when using quan option #34

CKFF opened this issue Mar 7, 2019 · 1 comment

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@CKFF
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CKFF commented Mar 7, 2019

Describe the bug
I tried to create the parse matrix file including reporter ion quantification (TMT10x). It works well using the command line, but doesn't work with the GUI-beta. No file is created.

Description of raw file
m02846.raw from PXD002875

Command line arguments
RawToolsGUI-beta. In the logfile

Command line output

Screenshots
system summary.txt
rawtools_log_parseMatrix_TMT10.txt
screenshot

Desktop & RawTools information:

  • OS: Win10, see system summary.txt file for details
  • RawTools version: RawToolsGUI-beta

Additional context
using the same raw file as input:
create mgf: OK
create parse matrix: OK
create mgf + parse matrix: OK
create mgf + parse matrix + TMT10 Quantification: fails
create parse matrix + TMT 10 Quantification: fails

@kevinkovalchik
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Thanks for bringing up the issue. I'm pretty sure this is a problem that came up and was fixed in the CLI version recently. I'm planning to merge the two in the next release, so it should be fixed soon.

Let me know if you prefer to use the GUI and I will see about uploading a fixed version to the GUI-beta before the next release.

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