poe quality

Author: akhanf

.github/dependabot.yml

@@ -1,15 +1,15 @@
+---
 version: 2
 updates:
-  - package-ecosystem: "github-actions"
+  - package-ecosystem: github-actions
     # Workflow files stored in the default location of `.github/workflows`. 
     # (You don't need to specify `/.github/workflows` for `directory`. 
     # You can use `directory: "/"`.)
-    directory: "/"
+    directory: /
     # Run on first of each month
     schedule:
-      interval: "monthly"
+      interval: monthly
     # Group to submit a single PR if possible
     groups:
       github-actions:
-        patterns:
-          - "*"
+        patterns: ['*']

scattr/workflow/rules/freesurfer.smk

@@ -76,9 +76,7 @@ rule thalamic_segmentation:
         subj_dir=str(Path(bids(**inputs.subj_wildcards)).parent),
     output:
         thal_seg=str(
-            Path(
-                bids(root=freesurfer_dir, **inputs.subj_wildcards)
-            ).parent
+            Path(bids(root=freesurfer_dir, **inputs.subj_wildcards)).parent
             / "mri"
             / "ThalamicNuclei.v12.T1.mgz"
         ),
@@ -115,9 +113,7 @@ rule mgz2nii:
         if not config.get("skip_thal_seg")
         else [],
         aparcaseg=str(
-            Path(
-                bids(root=freesurfer_dir, **inputs.subj_wildcards)
-            ).parent
+            Path(bids(root=freesurfer_dir, **inputs.subj_wildcards)).parent
             / "mri"
             / "aparc+aseg.mgz"
         ),

scattr/workflow/rules/zona_bb_subcortex.smk

@@ -71,9 +71,7 @@ rule reg2native:
             / Path(config["zona_bb_subcortex"][config["Space"]]["dir"])
             / Path(config["zona_bb_subcortex"][config["Space"]]["T1w"])
         ),
-        target=lambda wildcards: inputs["T1w"]
-        .filter(**wildcards)
-        .expand()[0],
+        target=lambda wildcards: inputs["T1w"].filter(**wildcards).expand()[0],
     params:
         out_dir=directory(str(Path(bids_anat()).parent)),
         out_prefix=bids_anat(