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walkthrough update 🔥
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kishwarshafin committed Aug 9, 2019
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This document provides a guideline on how to use the polishing pipeline.

## Installation
Please make sure you have installed `MarginPolish` and `HELEN` using the [installation guide](installation.md).

For this walkthrough we use docker containers. Please make sure you have docker installed.

## Download data
Create a data directory and download the reads there.
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