Invalid configuration of circular regions (holes are not supported)

[BrokenSpaghetti02]

The same type of problem was raised back in 2017 and it was not really solved. Here is the issue again:

Here is the information about the sets I'm using:

rnaseq_60k = {set of 60k genes}
rnaseq_40k = {set of 40k genes}
protein_coding = {set of genes involved in protein coding}

Note: rnaseq_40k is a subset of rnaseq_60k

[Irfan-Ahmad-byte]

Did you find the solution? If yes, then kindly share your solution here. Or please share your piece of code.

Thanks,

[konstantint]

There is no simple solution apart from inventing a new layout algorithm, which hasn't happened so far :)
There is a workaround, though - you may artificially inflate the intersection area either by temporarily adding the same element to all three sets, or using the venn3_unweighted with a tuned value of the subset_sizes vector.

[konstantint]

Version 1.1.0 (commit b9a34b0) introduces a new layout algorithm that should be capable of handling some of these corner cases better than the default one.