The data used in the examples are Listeria monocytogenes bacterial genomes in FASTA format:
- GCA_000585755.1_Lm1823_genomic.fna
- GCA_000585775.1_Lm1824_genomic.fna
- GCA_000585795.1_Lm1840_genomic.fna
The genomes were downloaded from National Center for Biotechnology Information.
The folder contains two scripts performing two basic scenarios of MBGC usage:
- ex1.sh - (de)compression of 3 FASTA files representing a collection of genomes
- ex2.sh - (de)compression of a small collection of genomes stored in a single file
The list of FASTA files used in ex2.sh is in:
The simple concatenation of the Listeria monocytogenes bacterial genomes used in ex2.sh is in:
- GCA_lm_concat.fna
For the examples to work, the mbgc binary needs to be located in a programs' folder
included in the system path, e.g. /usr/local/bin.
cp mbgc /usr/local/bin
Then you can start the tests by running:
bash ex1.sh
bash ex2.sh