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setup.py
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setup.py
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import os
from setuptools import setup
__NAME__ = 'GATK-to-hail-pipeline-example'
__VERSION__ = '0.1.0'
__DESCRIPTION__ = 'Example pipeline from unmapped reads (BAM) to a hail matrix table'
__AUTHOR__ = 'Jonathan La'
def get_requirements():
with open(os.path.abspath('./requirements.txt'), 'r') as f:
requirements = [i.strip() for i in f.readlines()]
return requirements
setup(
name=__NAME__,
version_info=__VERSION__,
description=__DESCRIPTION__,
author=__AUTHOR__,
license='MIT',
platforms=['any'],
zip_safe=False,
python_requires='>=3.7',
include_package_data=True,
install_requires=get_requirements(),
package_data={},
long_description=open('README.md', encoding='utf-8').read(),
long_description_content_type='text/markdown'
)