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I'm trying the ExtraEffects tools to segment femoral veins in CTAs (arteries great, veins have lower contrast, trying to avoid much manual clean up), couldn't get the control-click to work on Local Threshold, no response on Fast Marching, etc. I found the comment from April '21 by danpak94 at: https://discourse.slicer.org/t/new-segment-editor-effect-local-threshold/9233/42
and can confirm that while the tools work fine on non-transformed segments, I also have the problem that the tools don't like to work with segmentations that have been transformed (both rotated and translated in my case).
A workable workaround for me is to make a separate, non-transformed segmentation, but that may not be appropriate for everyone.
The text was updated successfully, but these errors were encountered:
Thanks for reporting. Which effects do you find are not compatible with transformed segmentation? Do you use a rigid transform (linear transform with translation or rotation) or a warping transform (grid, bspline, thin-plate-spline)? What is the reason for having the segmentation under a transform (varying slice spacing, curved planar reformatting, ...)?
I'm trying the ExtraEffects tools to segment femoral veins in CTAs (arteries great, veins have lower contrast, trying to avoid much manual clean up), couldn't get the control-click to work on Local Threshold, no response on Fast Marching, etc. I found the comment from April '21 by danpak94 at:
https://discourse.slicer.org/t/new-segment-editor-effect-local-threshold/9233/42
and can confirm that while the tools work fine on non-transformed segments, I also have the problem that the tools don't like to work with segmentations that have been transformed (both rotated and translated in my case).
A workable workaround for me is to make a separate, non-transformed segmentation, but that may not be appropriate for everyone.
The text was updated successfully, but these errors were encountered: